Literature DB >> 21588446

3-Phenyl-4-{3-[(p-tol-yloxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}sydnone.

Jia Hao Goh, Hoong-Kun Fun, B Kalluraya.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: 3-phenyl-4-{3-[(p-tol-yloxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-1,2,3-oxadiazol-3-ium-5-olate), C(20)H(16)N(6)O(3)S, an intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. The 3,6-dihydro-1,3,4-thia-diazine ring adopts a twist-boat conformation. The 1,2,3-oxadiazole and 1,2,4-triazole rings are inclined to each other at an inter-planar angle of 44.13 (13)°. The phenyl ring makes an inter-planar angle of 67.40 (13)° with the attached 1,2,3-oxadiazole ring. In the crystal structure, adjacent mol-ecules are inter-connected into two-mol-ecule-thick arrays parallel to (100) via C-H⋯O and C-H⋯N hydrogen bonds. A short S⋯O contact [2.9512 (18) Å] is observed.

Entities:  

Year:  2010        PMID: 21588446      PMCID: PMC3007576          DOI: 10.1107/S160053681002982X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to, and applications of materials related to the title compound, see: Hedge et al. (2008 ▶), Kalluraya & Rahiman (1997 ▶); Kalluraya et al. (2003 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Goh et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H16N6O3S M = 420.45 Monoclinic, a = 42.0781 (12) Å b = 8.2304 (2) Å c = 11.1488 (3) Å β = 101.630 (2)° V = 3781.78 (17) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.29 × 0.13 × 0.05 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.942, T max = 0.989 11383 measured reflections 3486 independent reflections 2496 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.101 S = 1.03 3486 reflections 272 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002982X/hb5565sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002982X/hb5565Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N6O3SF(000) = 1744
Mr = 420.45Dx = 1.477 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2771 reflections
a = 42.0781 (12) Åθ = 2.5–30.0°
b = 8.2304 (2) ŵ = 0.21 mm1
c = 11.1488 (3) ÅT = 100 K
β = 101.630 (2)°Block, colourless
V = 3781.78 (17) Å30.29 × 0.13 × 0.05 mm
Z = 8
Bruker SMART APEXII CCD diffractometer3486 independent reflections
Radiation source: fine-focus sealed tube2496 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 25.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −50→48
Tmin = 0.942, Tmax = 0.989k = −9→9
11383 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0388P)2 + 2.5537P] where P = (Fo2 + 2Fc2)/3
3486 reflections(Δ/σ)max < 0.001
272 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.40 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.220066 (15)0.57970 (8)0.11452 (6)0.01457 (18)
O10.10960 (4)0.4996 (2)0.35734 (14)0.0177 (4)
O20.19581 (4)−0.0842 (2)−0.00307 (14)0.0172 (4)
O30.24309 (4)0.0525 (2)0.06238 (15)0.0184 (4)
N10.16869 (5)0.7388 (3)0.34427 (18)0.0153 (5)
N20.19003 (5)0.7681 (3)0.26397 (18)0.0152 (5)
N30.17980 (5)0.5056 (3)0.26683 (17)0.0129 (5)
N40.17428 (5)0.3462 (3)0.22624 (17)0.0129 (5)
N50.16398 (5)−0.0737 (3)0.00868 (18)0.0167 (5)
N60.16286 (5)0.0537 (3)0.07725 (18)0.0132 (5)
C10.05562 (6)0.4348 (4)0.3630 (2)0.0206 (7)
H1A0.04950.48270.28620.025*
C20.03244 (6)0.3680 (4)0.4195 (2)0.0245 (7)
H2A0.01080.37110.37960.029*
C30.04051 (6)0.2958 (4)0.5348 (2)0.0204 (7)
C40.07298 (6)0.2943 (3)0.5906 (2)0.0211 (7)
H4A0.07900.24790.66790.025*
C50.09682 (6)0.3592 (3)0.5357 (2)0.0187 (6)
H5A0.11850.35520.57530.022*
C60.08808 (6)0.4304 (3)0.4209 (2)0.0159 (6)
C70.14297 (6)0.4960 (4)0.4192 (2)0.0163 (6)
H7A0.15030.38440.43180.020*
H7B0.14540.54810.49860.020*
C80.16269 (6)0.5830 (3)0.3431 (2)0.0135 (6)
C90.19615 (6)0.6265 (3)0.2203 (2)0.0129 (6)
C100.22834 (6)0.3743 (3)0.1735 (2)0.0139 (6)
H10A0.24050.31530.12230.017*
H10B0.24140.37880.25580.017*
C110.19694 (6)0.2875 (3)0.1751 (2)0.0111 (6)
C120.19158 (6)0.1326 (3)0.1140 (2)0.0117 (6)
C130.21431 (6)0.0430 (3)0.0616 (2)0.0138 (6)
C140.13078 (6)0.0942 (3)0.0973 (2)0.0145 (6)
C150.10783 (6)0.1424 (3)−0.0032 (2)0.0178 (6)
H15A0.11310.1511−0.08020.021*
C160.07679 (6)0.1774 (4)0.0136 (2)0.0230 (7)
H16A0.06080.2094−0.05260.028*
C170.06952 (6)0.1648 (3)0.1288 (2)0.0225 (7)
H17A0.04870.18960.13990.027*
C180.09303 (6)0.1153 (3)0.2280 (2)0.0210 (7)
H18A0.08790.10660.30500.025*
C190.12400 (6)0.0791 (3)0.2130 (2)0.0173 (6)
H19A0.13990.04530.27890.021*
C200.01502 (7)0.2227 (4)0.5972 (3)0.0314 (8)
H20D0.02520.18200.67640.047*
H20A0.00430.13520.54830.047*
H20B−0.00060.30440.60660.047*
U11U22U33U12U13U23
S10.0188 (3)0.0096 (4)0.0166 (3)0.0008 (3)0.0066 (2)−0.0007 (3)
O10.0168 (9)0.0222 (12)0.0141 (9)−0.0022 (9)0.0028 (7)0.0017 (9)
O20.0226 (10)0.0125 (11)0.0172 (9)0.0016 (9)0.0059 (7)−0.0051 (9)
O30.0185 (10)0.0192 (12)0.0184 (9)0.0015 (9)0.0057 (7)−0.0013 (9)
N10.0197 (12)0.0147 (14)0.0119 (11)0.0013 (11)0.0039 (9)−0.0007 (11)
N20.0194 (12)0.0124 (14)0.0144 (11)0.0007 (10)0.0050 (9)−0.0002 (11)
N30.0160 (11)0.0083 (13)0.0140 (11)0.0006 (10)0.0026 (9)−0.0036 (11)
N40.0200 (11)0.0073 (13)0.0116 (10)0.0006 (10)0.0033 (9)0.0009 (11)
N50.0208 (12)0.0139 (14)0.0156 (11)0.0019 (11)0.0044 (9)−0.0011 (12)
N60.0202 (12)0.0088 (13)0.0101 (10)0.0031 (10)0.0021 (8)0.0001 (11)
C10.0234 (14)0.0203 (18)0.0171 (14)−0.0002 (14)0.0020 (11)−0.0008 (14)
C20.0171 (14)0.0258 (19)0.0298 (16)−0.0009 (14)0.0030 (11)−0.0038 (15)
C30.0232 (15)0.0153 (17)0.0245 (15)−0.0003 (13)0.0093 (12)−0.0029 (14)
C40.0292 (16)0.0193 (18)0.0164 (14)0.0005 (14)0.0086 (12)0.0016 (14)
C50.0179 (14)0.0181 (17)0.0202 (14)0.0017 (13)0.0036 (11)0.0007 (14)
C60.0206 (14)0.0108 (16)0.0179 (13)0.0008 (13)0.0074 (10)−0.0028 (13)
C70.0163 (13)0.0182 (17)0.0141 (13)0.0026 (13)0.0024 (10)0.0003 (13)
C80.0142 (13)0.0140 (16)0.0119 (12)0.0023 (13)0.0015 (10)−0.0012 (14)
C90.0162 (13)0.0105 (16)0.0112 (13)−0.0009 (12)0.0004 (10)0.0014 (13)
C100.0171 (13)0.0079 (16)0.0168 (13)0.0030 (12)0.0035 (10)0.0011 (13)
C110.0171 (13)0.0072 (15)0.0078 (12)0.0042 (12)−0.0003 (10)0.0019 (12)
C120.0139 (13)0.0099 (15)0.0110 (12)0.0008 (12)0.0018 (10)0.0013 (12)
C130.0263 (15)0.0057 (16)0.0086 (12)−0.0009 (13)0.0016 (10)0.0015 (12)
C140.0152 (13)0.0099 (16)0.0181 (13)−0.0043 (12)0.0025 (10)−0.0021 (13)
C150.0222 (14)0.0157 (17)0.0149 (13)−0.0029 (13)0.0026 (11)0.0012 (13)
C160.0210 (15)0.0209 (19)0.0256 (15)−0.0005 (14)0.0009 (11)0.0035 (15)
C170.0207 (14)0.0170 (18)0.0316 (16)0.0002 (13)0.0094 (12)−0.0016 (15)
C180.0284 (15)0.0171 (18)0.0198 (14)−0.0048 (14)0.0105 (12)−0.0033 (13)
C190.0253 (14)0.0123 (16)0.0131 (13)−0.0032 (13)0.0010 (10)0.0009 (13)
C200.0276 (16)0.031 (2)0.0377 (18)−0.0037 (15)0.0126 (13)−0.0001 (17)
S1—C91.741 (2)C4—H4A0.9300
S1—C101.822 (3)C5—C61.387 (3)
O1—C61.381 (3)C5—H5A0.9300
O1—C71.435 (3)C7—C81.485 (3)
O2—N51.375 (2)C7—H7A0.9700
O2—C131.413 (3)C7—H7B0.9700
O3—C131.212 (3)C10—C111.505 (3)
N1—C81.306 (3)C10—H10A0.9700
N1—N21.411 (3)C10—H10B0.9700
N2—C91.309 (3)C11—C121.442 (4)
N3—C91.369 (3)C12—C131.423 (3)
N3—C81.376 (3)C14—C191.382 (3)
N3—N41.392 (3)C14—C151.382 (3)
N4—C111.299 (3)C15—C161.387 (3)
N5—N61.304 (3)C15—H15A0.9300
N6—C121.360 (3)C16—C171.382 (4)
N6—C141.451 (3)C16—H16A0.9300
C1—C21.378 (4)C17—C181.388 (4)
C1—C61.389 (3)C17—H17A0.9300
C1—H1A0.9300C18—C191.380 (3)
C2—C31.395 (4)C18—H18A0.9300
C2—H2A0.9300C19—H19A0.9300
C3—C41.382 (3)C20—H20D0.9600
C3—C201.516 (4)C20—H20A0.9600
C4—C51.384 (3)C20—H20B0.9600
C9—S1—C1093.16 (12)N2—C9—S1129.3 (2)
C6—O1—C7115.08 (18)N3—C9—S1119.9 (2)
N5—O2—C13110.62 (18)C11—C10—S1109.88 (17)
C8—N1—N2107.9 (2)C11—C10—H10A109.7
C9—N2—N1106.4 (2)S1—C10—H10A109.7
C9—N3—C8105.3 (2)C11—C10—H10B109.7
C9—N3—N4128.70 (19)S1—C10—H10B109.7
C8—N3—N4124.3 (2)H10A—C10—H10B108.2
C11—N4—N3113.8 (2)N4—C11—C12118.5 (2)
N6—N5—O2104.90 (18)N4—C11—C10123.5 (2)
N5—N6—C12115.2 (2)C12—C11—C10117.9 (2)
N5—N6—C14114.8 (2)N6—C12—C13105.0 (2)
C12—N6—C14129.9 (2)N6—C12—C11127.6 (2)
C2—C1—C6119.8 (2)C13—C12—C11126.7 (2)
C2—C1—H1A120.1O3—C13—O2119.9 (2)
C6—C1—H1A120.1O3—C13—C12135.8 (2)
C1—C2—C3121.9 (2)O2—C13—C12104.3 (2)
C1—C2—H2A119.1C19—C14—C15122.7 (2)
C3—C2—H2A119.1C19—C14—N6119.8 (2)
C4—C3—C2117.0 (2)C15—C14—N6117.5 (2)
C4—C3—C20121.1 (2)C14—C15—C16118.2 (2)
C2—C3—C20121.9 (2)C14—C15—H15A120.9
C3—C4—C5122.4 (3)C16—C15—H15A120.9
C3—C4—H4A118.8C17—C16—C15120.1 (2)
C5—C4—H4A118.8C17—C16—H16A120.0
C4—C5—C6119.3 (2)C15—C16—H16A120.0
C4—C5—H5A120.3C16—C17—C18120.4 (2)
C6—C5—H5A120.3C16—C17—H17A119.8
O1—C6—C5124.7 (2)C18—C17—H17A119.8
O1—C6—C1115.8 (2)C19—C18—C17120.4 (2)
C5—C6—C1119.5 (2)C19—C18—H18A119.8
O1—C7—C8108.69 (19)C17—C18—H18A119.8
O1—C7—H7A110.0C18—C19—C14118.1 (2)
C8—C7—H7A110.0C18—C19—H19A120.9
O1—C7—H7B110.0C14—C19—H19A120.9
C8—C7—H7B110.0C3—C20—H20D109.5
H7A—C7—H7B108.3C3—C20—H20A109.5
N1—C8—N3109.7 (2)H20D—C20—H20A109.5
N1—C8—C7126.6 (2)C3—C20—H20B109.5
N3—C8—C7123.5 (2)H20D—C20—H20B109.5
N2—C9—N3110.8 (2)H20A—C20—H20B109.5
C8—N1—N2—C9−1.1 (3)C10—S1—C9—N2154.0 (2)
C9—N3—N4—C1130.0 (3)C10—S1—C9—N3−28.0 (2)
C8—N3—N4—C11−167.4 (2)C9—S1—C10—C1154.13 (18)
C13—O2—N5—N60.0 (2)N3—N4—C11—C12−171.17 (19)
O2—N5—N6—C120.0 (3)N3—N4—C11—C107.4 (3)
O2—N5—N6—C14176.97 (18)S1—C10—C11—N4−52.4 (3)
C6—C1—C2—C30.4 (4)S1—C10—C11—C12126.2 (2)
C1—C2—C3—C40.1 (4)N5—N6—C12—C130.0 (3)
C1—C2—C3—C20179.9 (3)C14—N6—C12—C13−176.4 (2)
C2—C3—C4—C5−0.6 (4)N5—N6—C12—C11170.7 (2)
C20—C3—C4—C5179.6 (3)C14—N6—C12—C11−5.7 (4)
C3—C4—C5—C60.7 (4)N4—C11—C12—N616.6 (4)
C7—O1—C6—C5−0.8 (4)C10—C11—C12—N6−162.0 (2)
C7—O1—C6—C1179.2 (2)N4—C11—C12—C13−174.6 (2)
C4—C5—C6—O1179.7 (3)C10—C11—C12—C136.8 (4)
C4—C5—C6—C1−0.2 (4)N5—O2—C13—O3179.4 (2)
C2—C1—C6—O1179.8 (2)N5—O2—C13—C120.0 (2)
C2—C1—C6—C5−0.3 (4)N6—C12—C13—O3−179.3 (3)
C6—O1—C7—C8−176.7 (2)C11—C12—C13—O39.9 (5)
N2—N1—C8—N31.3 (3)N6—C12—C13—O20.0 (2)
N2—N1—C8—C7176.2 (2)C11—C12—C13—O2−170.8 (2)
C9—N3—C8—N1−1.1 (3)N5—N6—C14—C19112.8 (3)
N4—N3—C8—N1−167.0 (2)C12—N6—C14—C19−70.9 (4)
C9—N3—C8—C7−176.1 (2)N5—N6—C14—C15−65.3 (3)
N4—N3—C8—C718.0 (3)C12—N6—C14—C15111.1 (3)
O1—C7—C8—N187.1 (3)C19—C14—C15—C160.3 (4)
O1—C7—C8—N3−98.7 (3)N6—C14—C15—C16178.3 (2)
N1—N2—C9—N30.5 (3)C14—C15—C16—C170.4 (4)
N1—N2—C9—S1178.59 (18)C15—C16—C17—C18−0.7 (4)
C8—N3—C9—N20.3 (3)C16—C17—C18—C190.4 (4)
N4—N3—C9—N2165.4 (2)C17—C18—C19—C140.3 (4)
C8—N3—C9—S1−178.00 (17)C15—C14—C19—C18−0.7 (4)
N4—N3—C9—S1−12.9 (3)N6—C14—C19—C18−178.6 (2)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O30.972.273.041 (3)135
C10—H10A···O3i0.972.543.162 (3)122
C10—H10B···O3ii0.972.463.292 (3)144
C19—H19A···N5iii0.932.573.386 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O30.972.273.041 (3)135
C10—H10A⋯O3i0.972.543.162 (3)122
C10—H10B⋯O3ii0.972.463.292 (3)144
C19—H19A⋯N5iii0.932.573.386 (3)147

Symmetry codes: (i) ; (ii) ; (iii) .

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  6 in total
  3 in total

1.  4-[3-(Phen-oxy-meth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-3-(p-tol-yl)sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

2.  7-(4-Chloro-benzyl-idene)-3-[(4-chloro-phen-oxy)meth-yl]-6-(4-nitro-thio-phen-2-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazine.

Authors:  Hoong-Kun Fun; Safra Izuani Jama Asik; Ibrahim Abdul Razak; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

3.  4-{3-[(2-Isopropyl-5-methyl-phen-oxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-3-(p-tol-yl)sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-04
  3 in total

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