| Literature DB >> 21588446 |
Jia Hao Goh, Hoong-Kun Fun, B Kalluraya.
Abstract
IN THE TITLE COMPOUND (SYSTEMATIC NAME: 3-phenyl-4-{3-[(p-tol-yloxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-1,2,3-oxadiazol-3-ium-5-olate), C(20)H(16)N(6)O(3)S, an intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. The 3,6-dihydro-1,3,4-thia-diazine ring adopts a twist-boat conformation. The 1,2,3-oxadiazole and 1,2,4-triazole rings are inclined to each other at an inter-planar angle of 44.13 (13)°. The phenyl ring makes an inter-planar angle of 67.40 (13)° with the attached 1,2,3-oxadiazole ring. In the crystal structure, adjacent mol-ecules are inter-connected into two-mol-ecule-thick arrays parallel to (100) via C-H⋯O and C-H⋯N hydrogen bonds. A short S⋯O contact [2.9512 (18) Å] is observed.Entities:
Year: 2010 PMID: 21588446 PMCID: PMC3007576 DOI: 10.1107/S160053681002982X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H16N6O3S | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2771 reflections |
| θ = 2.5–30.0° | |
| µ = 0.21 mm−1 | |
| β = 101.630 (2)° | Block, colourless |
| 0.29 × 0.13 × 0.05 mm | |
| Bruker SMART APEXII CCD diffractometer | 3486 independent reflections |
| Radiation source: fine-focus sealed tube | 2496 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 11383 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3486 reflections | (Δ/σ)max < 0.001 |
| 272 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.220066 (15) | 0.57970 (8) | 0.11452 (6) | 0.01457 (18) | |
| O1 | 0.10960 (4) | 0.4996 (2) | 0.35734 (14) | 0.0177 (4) | |
| O2 | 0.19581 (4) | −0.0842 (2) | −0.00307 (14) | 0.0172 (4) | |
| O3 | 0.24309 (4) | 0.0525 (2) | 0.06238 (15) | 0.0184 (4) | |
| N1 | 0.16869 (5) | 0.7388 (3) | 0.34427 (18) | 0.0153 (5) | |
| N2 | 0.19003 (5) | 0.7681 (3) | 0.26397 (18) | 0.0152 (5) | |
| N3 | 0.17980 (5) | 0.5056 (3) | 0.26683 (17) | 0.0129 (5) | |
| N4 | 0.17428 (5) | 0.3462 (3) | 0.22624 (17) | 0.0129 (5) | |
| N5 | 0.16398 (5) | −0.0737 (3) | 0.00868 (18) | 0.0167 (5) | |
| N6 | 0.16286 (5) | 0.0537 (3) | 0.07725 (18) | 0.0132 (5) | |
| C1 | 0.05562 (6) | 0.4348 (4) | 0.3630 (2) | 0.0206 (7) | |
| H1A | 0.0495 | 0.4827 | 0.2862 | 0.025* | |
| C2 | 0.03244 (6) | 0.3680 (4) | 0.4195 (2) | 0.0245 (7) | |
| H2A | 0.0108 | 0.3711 | 0.3796 | 0.029* | |
| C3 | 0.04051 (6) | 0.2958 (4) | 0.5348 (2) | 0.0204 (7) | |
| C4 | 0.07298 (6) | 0.2943 (3) | 0.5906 (2) | 0.0211 (7) | |
| H4A | 0.0790 | 0.2479 | 0.6679 | 0.025* | |
| C5 | 0.09682 (6) | 0.3592 (3) | 0.5357 (2) | 0.0187 (6) | |
| H5A | 0.1185 | 0.3552 | 0.5753 | 0.022* | |
| C6 | 0.08808 (6) | 0.4304 (3) | 0.4209 (2) | 0.0159 (6) | |
| C7 | 0.14297 (6) | 0.4960 (4) | 0.4192 (2) | 0.0163 (6) | |
| H7A | 0.1503 | 0.3844 | 0.4318 | 0.020* | |
| H7B | 0.1454 | 0.5481 | 0.4986 | 0.020* | |
| C8 | 0.16269 (6) | 0.5830 (3) | 0.3431 (2) | 0.0135 (6) | |
| C9 | 0.19615 (6) | 0.6265 (3) | 0.2203 (2) | 0.0129 (6) | |
| C10 | 0.22834 (6) | 0.3743 (3) | 0.1735 (2) | 0.0139 (6) | |
| H10A | 0.2405 | 0.3153 | 0.1223 | 0.017* | |
| H10B | 0.2414 | 0.3788 | 0.2558 | 0.017* | |
| C11 | 0.19694 (6) | 0.2875 (3) | 0.1751 (2) | 0.0111 (6) | |
| C12 | 0.19158 (6) | 0.1326 (3) | 0.1140 (2) | 0.0117 (6) | |
| C13 | 0.21431 (6) | 0.0430 (3) | 0.0616 (2) | 0.0138 (6) | |
| C14 | 0.13078 (6) | 0.0942 (3) | 0.0973 (2) | 0.0145 (6) | |
| C15 | 0.10783 (6) | 0.1424 (3) | −0.0032 (2) | 0.0178 (6) | |
| H15A | 0.1131 | 0.1511 | −0.0802 | 0.021* | |
| C16 | 0.07679 (6) | 0.1774 (4) | 0.0136 (2) | 0.0230 (7) | |
| H16A | 0.0608 | 0.2094 | −0.0526 | 0.028* | |
| C17 | 0.06952 (6) | 0.1648 (3) | 0.1288 (2) | 0.0225 (7) | |
| H17A | 0.0487 | 0.1896 | 0.1399 | 0.027* | |
| C18 | 0.09303 (6) | 0.1153 (3) | 0.2280 (2) | 0.0210 (7) | |
| H18A | 0.0879 | 0.1066 | 0.3050 | 0.025* | |
| C19 | 0.12400 (6) | 0.0791 (3) | 0.2130 (2) | 0.0173 (6) | |
| H19A | 0.1399 | 0.0453 | 0.2789 | 0.021* | |
| C20 | 0.01502 (7) | 0.2227 (4) | 0.5972 (3) | 0.0314 (8) | |
| H20D | 0.0252 | 0.1820 | 0.6764 | 0.047* | |
| H20A | 0.0043 | 0.1352 | 0.5483 | 0.047* | |
| H20B | −0.0006 | 0.3044 | 0.6066 | 0.047* |
| S1 | 0.0188 (3) | 0.0096 (4) | 0.0166 (3) | 0.0008 (3) | 0.0066 (2) | −0.0007 (3) |
| O1 | 0.0168 (9) | 0.0222 (12) | 0.0141 (9) | −0.0022 (9) | 0.0028 (7) | 0.0017 (9) |
| O2 | 0.0226 (10) | 0.0125 (11) | 0.0172 (9) | 0.0016 (9) | 0.0059 (7) | −0.0051 (9) |
| O3 | 0.0185 (10) | 0.0192 (12) | 0.0184 (9) | 0.0015 (9) | 0.0057 (7) | −0.0013 (9) |
| N1 | 0.0197 (12) | 0.0147 (14) | 0.0119 (11) | 0.0013 (11) | 0.0039 (9) | −0.0007 (11) |
| N2 | 0.0194 (12) | 0.0124 (14) | 0.0144 (11) | 0.0007 (10) | 0.0050 (9) | −0.0002 (11) |
| N3 | 0.0160 (11) | 0.0083 (13) | 0.0140 (11) | 0.0006 (10) | 0.0026 (9) | −0.0036 (11) |
| N4 | 0.0200 (11) | 0.0073 (13) | 0.0116 (10) | 0.0006 (10) | 0.0033 (9) | 0.0009 (11) |
| N5 | 0.0208 (12) | 0.0139 (14) | 0.0156 (11) | 0.0019 (11) | 0.0044 (9) | −0.0011 (12) |
| N6 | 0.0202 (12) | 0.0088 (13) | 0.0101 (10) | 0.0031 (10) | 0.0021 (8) | 0.0001 (11) |
| C1 | 0.0234 (14) | 0.0203 (18) | 0.0171 (14) | −0.0002 (14) | 0.0020 (11) | −0.0008 (14) |
| C2 | 0.0171 (14) | 0.0258 (19) | 0.0298 (16) | −0.0009 (14) | 0.0030 (11) | −0.0038 (15) |
| C3 | 0.0232 (15) | 0.0153 (17) | 0.0245 (15) | −0.0003 (13) | 0.0093 (12) | −0.0029 (14) |
| C4 | 0.0292 (16) | 0.0193 (18) | 0.0164 (14) | 0.0005 (14) | 0.0086 (12) | 0.0016 (14) |
| C5 | 0.0179 (14) | 0.0181 (17) | 0.0202 (14) | 0.0017 (13) | 0.0036 (11) | 0.0007 (14) |
| C6 | 0.0206 (14) | 0.0108 (16) | 0.0179 (13) | 0.0008 (13) | 0.0074 (10) | −0.0028 (13) |
| C7 | 0.0163 (13) | 0.0182 (17) | 0.0141 (13) | 0.0026 (13) | 0.0024 (10) | 0.0003 (13) |
| C8 | 0.0142 (13) | 0.0140 (16) | 0.0119 (12) | 0.0023 (13) | 0.0015 (10) | −0.0012 (14) |
| C9 | 0.0162 (13) | 0.0105 (16) | 0.0112 (13) | −0.0009 (12) | 0.0004 (10) | 0.0014 (13) |
| C10 | 0.0171 (13) | 0.0079 (16) | 0.0168 (13) | 0.0030 (12) | 0.0035 (10) | 0.0011 (13) |
| C11 | 0.0171 (13) | 0.0072 (15) | 0.0078 (12) | 0.0042 (12) | −0.0003 (10) | 0.0019 (12) |
| C12 | 0.0139 (13) | 0.0099 (15) | 0.0110 (12) | 0.0008 (12) | 0.0018 (10) | 0.0013 (12) |
| C13 | 0.0263 (15) | 0.0057 (16) | 0.0086 (12) | −0.0009 (13) | 0.0016 (10) | 0.0015 (12) |
| C14 | 0.0152 (13) | 0.0099 (16) | 0.0181 (13) | −0.0043 (12) | 0.0025 (10) | −0.0021 (13) |
| C15 | 0.0222 (14) | 0.0157 (17) | 0.0149 (13) | −0.0029 (13) | 0.0026 (11) | 0.0012 (13) |
| C16 | 0.0210 (15) | 0.0209 (19) | 0.0256 (15) | −0.0005 (14) | 0.0009 (11) | 0.0035 (15) |
| C17 | 0.0207 (14) | 0.0170 (18) | 0.0316 (16) | 0.0002 (13) | 0.0094 (12) | −0.0016 (15) |
| C18 | 0.0284 (15) | 0.0171 (18) | 0.0198 (14) | −0.0048 (14) | 0.0105 (12) | −0.0033 (13) |
| C19 | 0.0253 (14) | 0.0123 (16) | 0.0131 (13) | −0.0032 (13) | 0.0010 (10) | 0.0009 (13) |
| C20 | 0.0276 (16) | 0.031 (2) | 0.0377 (18) | −0.0037 (15) | 0.0126 (13) | −0.0001 (17) |
| S1—C9 | 1.741 (2) | C4—H4A | 0.9300 |
| S1—C10 | 1.822 (3) | C5—C6 | 1.387 (3) |
| O1—C6 | 1.381 (3) | C5—H5A | 0.9300 |
| O1—C7 | 1.435 (3) | C7—C8 | 1.485 (3) |
| O2—N5 | 1.375 (2) | C7—H7A | 0.9700 |
| O2—C13 | 1.413 (3) | C7—H7B | 0.9700 |
| O3—C13 | 1.212 (3) | C10—C11 | 1.505 (3) |
| N1—C8 | 1.306 (3) | C10—H10A | 0.9700 |
| N1—N2 | 1.411 (3) | C10—H10B | 0.9700 |
| N2—C9 | 1.309 (3) | C11—C12 | 1.442 (4) |
| N3—C9 | 1.369 (3) | C12—C13 | 1.423 (3) |
| N3—C8 | 1.376 (3) | C14—C19 | 1.382 (3) |
| N3—N4 | 1.392 (3) | C14—C15 | 1.382 (3) |
| N4—C11 | 1.299 (3) | C15—C16 | 1.387 (3) |
| N5—N6 | 1.304 (3) | C15—H15A | 0.9300 |
| N6—C12 | 1.360 (3) | C16—C17 | 1.382 (4) |
| N6—C14 | 1.451 (3) | C16—H16A | 0.9300 |
| C1—C2 | 1.378 (4) | C17—C18 | 1.388 (4) |
| C1—C6 | 1.389 (3) | C17—H17A | 0.9300 |
| C1—H1A | 0.9300 | C18—C19 | 1.380 (3) |
| C2—C3 | 1.395 (4) | C18—H18A | 0.9300 |
| C2—H2A | 0.9300 | C19—H19A | 0.9300 |
| C3—C4 | 1.382 (3) | C20—H20D | 0.9600 |
| C3—C20 | 1.516 (4) | C20—H20A | 0.9600 |
| C4—C5 | 1.384 (3) | C20—H20B | 0.9600 |
| C9—S1—C10 | 93.16 (12) | N2—C9—S1 | 129.3 (2) |
| C6—O1—C7 | 115.08 (18) | N3—C9—S1 | 119.9 (2) |
| N5—O2—C13 | 110.62 (18) | C11—C10—S1 | 109.88 (17) |
| C8—N1—N2 | 107.9 (2) | C11—C10—H10A | 109.7 |
| C9—N2—N1 | 106.4 (2) | S1—C10—H10A | 109.7 |
| C9—N3—C8 | 105.3 (2) | C11—C10—H10B | 109.7 |
| C9—N3—N4 | 128.70 (19) | S1—C10—H10B | 109.7 |
| C8—N3—N4 | 124.3 (2) | H10A—C10—H10B | 108.2 |
| C11—N4—N3 | 113.8 (2) | N4—C11—C12 | 118.5 (2) |
| N6—N5—O2 | 104.90 (18) | N4—C11—C10 | 123.5 (2) |
| N5—N6—C12 | 115.2 (2) | C12—C11—C10 | 117.9 (2) |
| N5—N6—C14 | 114.8 (2) | N6—C12—C13 | 105.0 (2) |
| C12—N6—C14 | 129.9 (2) | N6—C12—C11 | 127.6 (2) |
| C2—C1—C6 | 119.8 (2) | C13—C12—C11 | 126.7 (2) |
| C2—C1—H1A | 120.1 | O3—C13—O2 | 119.9 (2) |
| C6—C1—H1A | 120.1 | O3—C13—C12 | 135.8 (2) |
| C1—C2—C3 | 121.9 (2) | O2—C13—C12 | 104.3 (2) |
| C1—C2—H2A | 119.1 | C19—C14—C15 | 122.7 (2) |
| C3—C2—H2A | 119.1 | C19—C14—N6 | 119.8 (2) |
| C4—C3—C2 | 117.0 (2) | C15—C14—N6 | 117.5 (2) |
| C4—C3—C20 | 121.1 (2) | C14—C15—C16 | 118.2 (2) |
| C2—C3—C20 | 121.9 (2) | C14—C15—H15A | 120.9 |
| C3—C4—C5 | 122.4 (3) | C16—C15—H15A | 120.9 |
| C3—C4—H4A | 118.8 | C17—C16—C15 | 120.1 (2) |
| C5—C4—H4A | 118.8 | C17—C16—H16A | 120.0 |
| C4—C5—C6 | 119.3 (2) | C15—C16—H16A | 120.0 |
| C4—C5—H5A | 120.3 | C16—C17—C18 | 120.4 (2) |
| C6—C5—H5A | 120.3 | C16—C17—H17A | 119.8 |
| O1—C6—C5 | 124.7 (2) | C18—C17—H17A | 119.8 |
| O1—C6—C1 | 115.8 (2) | C19—C18—C17 | 120.4 (2) |
| C5—C6—C1 | 119.5 (2) | C19—C18—H18A | 119.8 |
| O1—C7—C8 | 108.69 (19) | C17—C18—H18A | 119.8 |
| O1—C7—H7A | 110.0 | C18—C19—C14 | 118.1 (2) |
| C8—C7—H7A | 110.0 | C18—C19—H19A | 120.9 |
| O1—C7—H7B | 110.0 | C14—C19—H19A | 120.9 |
| C8—C7—H7B | 110.0 | C3—C20—H20D | 109.5 |
| H7A—C7—H7B | 108.3 | C3—C20—H20A | 109.5 |
| N1—C8—N3 | 109.7 (2) | H20D—C20—H20A | 109.5 |
| N1—C8—C7 | 126.6 (2) | C3—C20—H20B | 109.5 |
| N3—C8—C7 | 123.5 (2) | H20D—C20—H20B | 109.5 |
| N2—C9—N3 | 110.8 (2) | H20A—C20—H20B | 109.5 |
| C8—N1—N2—C9 | −1.1 (3) | C10—S1—C9—N2 | 154.0 (2) |
| C9—N3—N4—C11 | 30.0 (3) | C10—S1—C9—N3 | −28.0 (2) |
| C8—N3—N4—C11 | −167.4 (2) | C9—S1—C10—C11 | 54.13 (18) |
| C13—O2—N5—N6 | 0.0 (2) | N3—N4—C11—C12 | −171.17 (19) |
| O2—N5—N6—C12 | 0.0 (3) | N3—N4—C11—C10 | 7.4 (3) |
| O2—N5—N6—C14 | 176.97 (18) | S1—C10—C11—N4 | −52.4 (3) |
| C6—C1—C2—C3 | 0.4 (4) | S1—C10—C11—C12 | 126.2 (2) |
| C1—C2—C3—C4 | 0.1 (4) | N5—N6—C12—C13 | 0.0 (3) |
| C1—C2—C3—C20 | 179.9 (3) | C14—N6—C12—C13 | −176.4 (2) |
| C2—C3—C4—C5 | −0.6 (4) | N5—N6—C12—C11 | 170.7 (2) |
| C20—C3—C4—C5 | 179.6 (3) | C14—N6—C12—C11 | −5.7 (4) |
| C3—C4—C5—C6 | 0.7 (4) | N4—C11—C12—N6 | 16.6 (4) |
| C7—O1—C6—C5 | −0.8 (4) | C10—C11—C12—N6 | −162.0 (2) |
| C7—O1—C6—C1 | 179.2 (2) | N4—C11—C12—C13 | −174.6 (2) |
| C4—C5—C6—O1 | 179.7 (3) | C10—C11—C12—C13 | 6.8 (4) |
| C4—C5—C6—C1 | −0.2 (4) | N5—O2—C13—O3 | 179.4 (2) |
| C2—C1—C6—O1 | 179.8 (2) | N5—O2—C13—C12 | 0.0 (2) |
| C2—C1—C6—C5 | −0.3 (4) | N6—C12—C13—O3 | −179.3 (3) |
| C6—O1—C7—C8 | −176.7 (2) | C11—C12—C13—O3 | 9.9 (5) |
| N2—N1—C8—N3 | 1.3 (3) | N6—C12—C13—O2 | 0.0 (2) |
| N2—N1—C8—C7 | 176.2 (2) | C11—C12—C13—O2 | −170.8 (2) |
| C9—N3—C8—N1 | −1.1 (3) | N5—N6—C14—C19 | 112.8 (3) |
| N4—N3—C8—N1 | −167.0 (2) | C12—N6—C14—C19 | −70.9 (4) |
| C9—N3—C8—C7 | −176.1 (2) | N5—N6—C14—C15 | −65.3 (3) |
| N4—N3—C8—C7 | 18.0 (3) | C12—N6—C14—C15 | 111.1 (3) |
| O1—C7—C8—N1 | 87.1 (3) | C19—C14—C15—C16 | 0.3 (4) |
| O1—C7—C8—N3 | −98.7 (3) | N6—C14—C15—C16 | 178.3 (2) |
| N1—N2—C9—N3 | 0.5 (3) | C14—C15—C16—C17 | 0.4 (4) |
| N1—N2—C9—S1 | 178.59 (18) | C15—C16—C17—C18 | −0.7 (4) |
| C8—N3—C9—N2 | 0.3 (3) | C16—C17—C18—C19 | 0.4 (4) |
| N4—N3—C9—N2 | 165.4 (2) | C17—C18—C19—C14 | 0.3 (4) |
| C8—N3—C9—S1 | −178.00 (17) | C15—C14—C19—C18 | −0.7 (4) |
| N4—N3—C9—S1 | −12.9 (3) | N6—C14—C19—C18 | −178.6 (2) |
| H··· | ||||
| C10—H10A···O3 | 0.97 | 2.27 | 3.041 (3) | 135 |
| C10—H10A···O3i | 0.97 | 2.54 | 3.162 (3) | 122 |
| C10—H10B···O3ii | 0.97 | 2.46 | 3.292 (3) | 144 |
| C19—H19A···N5iii | 0.93 | 2.57 | 3.386 (3) | 147 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C10—H10 | 0.97 | 2.27 | 3.041 (3) | 135 |
| C10—H10 | 0.97 | 2.54 | 3.162 (3) | 122 |
| C10—H10 | 0.97 | 2.46 | 3.292 (3) | 144 |
| C19—H19 | 0.93 | 2.57 | 3.386 (3) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) .