Literature DB >> 21754553

7-(4-Chloro-benzyl-idene)-3-[(4-chloro-phen-oxy)meth-yl]-6-(4-nitro-thio-phen-2-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazine.

Hoong-Kun Fun, Safra Izuani Jama Asik, Ibrahim Abdul Razak, Balakrishna Kalluraya.   

Abstract

In the title compound, C(22)H(13)Cl(2)N(5)O(3)S(2), the thia-diazine ring adopts a half-chair conformation. The benzene rings of the chloro-phen-oxy and chloro-benzyl groups and the thio-phene ring form dihedral angles of 35.6 (1), 80.7 (1) and 14.2 (1)°, respectively, with the triazole ring. In the crystal, mol-ecules are connected into sheets parallel to ([Formula: see text]11) by inter-molecular C-H⋯N and C-H⋯Cl hydrogen bonds. In addition, π-π stacking inter-actions are observed between thio-phene and triazole rings, and between inversion-related triazole rings [centroid-centroid distances = 3.5975 (11) and 3.4324 (11) Å].

Entities:  

Year:  2011        PMID: 21754553      PMCID: PMC3089255          DOI: 10.1107/S1600536811015637

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of 1,2,4-triazole derivatives, see: Shujuan et al. (2004 ▶); Clemons et al. (2004 ▶); Johnston (2002 ▶); Wei et al. (2007 ▶). For ring conformations and ring puckering analysis, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶); Jin et al. (2004 ▶). For related structures, see: Goh et al. (2010 ▶).

Experimental

Crystal data

C22H13Cl2N5O3S2 M = 530.39 Triclinic, a = 8.5021 (2) Å b = 10.0379 (2) Å c = 14.3623 (3) Å α = 94.434 (1)° β = 97.981 (1)° γ = 109.242 (1)° V = 1136.07 (4) Å3 Z = 2 Mo Kα radiation μ = 0.51 mm−1 T = 296 K 0.39 × 0.32 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.827, T max = 0.946 19590 measured reflections 6548 independent reflections 5142 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.133 S = 1.04 6548 reflections 307 parameters H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015637/ci5185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015637/ci5185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H13Cl2N5O3S2Z = 2
Mr = 530.39F(000) = 540
Triclinic, P1Dx = 1.551 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5021 (2) ÅCell parameters from 5767 reflections
b = 10.0379 (2) Åθ = 2.7–32.0°
c = 14.3623 (3) ŵ = 0.51 mm1
α = 94.434 (1)°T = 296 K
β = 97.981 (1)°Plate, yellow
γ = 109.242 (1)°0.39 × 0.32 × 0.11 mm
V = 1136.07 (4) Å3
Bruker SMART APEXII CCD area-detector diffractometer6548 independent reflections
Radiation source: fine-focus sealed tube5142 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 30.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.827, Tmax = 0.946k = −14→14
19590 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0647P)2 + 0.3979P] where P = (Fo2 + 2Fc2)/3
6548 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.31310 (6)0.39243 (5)0.13806 (3)0.03764 (12)
S20.65367 (7)0.90408 (5)0.02701 (4)0.04462 (14)
Cl10.32206 (12)1.05741 (9)−0.46034 (7)0.0906 (3)
Cl20.17004 (8)0.36669 (8)0.58962 (4)0.06035 (17)
N10.0052 (2)0.34827 (18)−0.09684 (11)0.0418 (4)
N20.0543 (2)0.29741 (17)−0.01333 (11)0.0391 (3)
N30.23458 (18)0.51207 (16)−0.01635 (10)0.0316 (3)
N40.37735 (19)0.63329 (16)0.00403 (10)0.0349 (3)
N51.0471 (2)0.9832 (2)0.22741 (17)0.0602 (5)
O10.25195 (18)0.62527 (17)−0.20276 (10)0.0451 (3)
O21.1570 (3)1.0856 (3)0.2079 (2)0.0994 (8)
O31.0661 (3)0.9215 (3)0.29489 (15)0.0825 (6)
C10.1175 (3)0.7481 (2)−0.31056 (13)0.0416 (4)
H1A0.00970.6926−0.30270.050*
C20.1376 (3)0.8504 (2)−0.37127 (14)0.0455 (5)
H2A0.04360.8644−0.40450.055*
C30.2982 (3)0.9316 (2)−0.38211 (16)0.0486 (5)
C40.4404 (3)0.9153 (3)−0.33232 (18)0.0540 (5)
H4A0.54790.9717−0.33990.065*
C50.4199 (3)0.8139 (2)−0.27120 (15)0.0464 (5)
H5A0.51450.8028−0.23640.056*
C60.2593 (2)0.7284 (2)−0.26134 (12)0.0367 (4)
C70.0975 (3)0.5693 (2)−0.16998 (14)0.0433 (4)
H7A0.00890.5158−0.22270.052*
H7B0.06640.6464−0.14260.052*
C80.1140 (2)0.4746 (2)−0.09737 (12)0.0355 (4)
C90.1912 (2)0.39706 (18)0.03185 (12)0.0321 (3)
C100.4010 (2)0.57962 (18)0.16945 (12)0.0314 (3)
C110.4557 (2)0.66196 (18)0.09118 (12)0.0317 (3)
C120.6138 (2)0.78458 (19)0.10904 (12)0.0336 (3)
C130.7497 (2)0.8140 (2)0.17988 (13)0.0379 (4)
H13A0.75350.76230.23070.045*
C140.8840 (2)0.9339 (2)0.16526 (15)0.0416 (4)
C150.8518 (3)0.9942 (2)0.08699 (16)0.0456 (5)
H15A0.92781.07390.06870.055*
C160.4132 (2)0.64263 (19)0.25710 (12)0.0351 (4)
H16A0.46270.74130.26730.042*
C170.3573 (2)0.57331 (19)0.33897 (12)0.0336 (3)
C180.2834 (3)0.6385 (2)0.40089 (13)0.0405 (4)
H18A0.27320.72580.39060.049*
C190.2251 (3)0.5746 (2)0.47743 (13)0.0435 (4)
H19A0.17460.61800.51790.052*
C200.2426 (2)0.4462 (2)0.49313 (12)0.0392 (4)
C210.3189 (3)0.3808 (2)0.43452 (13)0.0411 (4)
H21A0.33140.29470.44630.049*
C220.3765 (2)0.4453 (2)0.35809 (12)0.0377 (4)
H22A0.42900.40210.31880.045*
U11U22U33U12U13U23
S10.0452 (3)0.0336 (2)0.0311 (2)0.01036 (19)0.00304 (18)0.00748 (16)
S20.0439 (3)0.0399 (3)0.0487 (3)0.0095 (2)0.0095 (2)0.0183 (2)
Cl10.1026 (6)0.0671 (4)0.1053 (6)0.0239 (4)0.0179 (5)0.0532 (4)
Cl20.0592 (4)0.0895 (4)0.0412 (3)0.0276 (3)0.0205 (2)0.0311 (3)
N10.0374 (9)0.0467 (9)0.0348 (8)0.0072 (7)0.0040 (6)0.0042 (7)
N20.0395 (9)0.0373 (8)0.0343 (8)0.0054 (7)0.0059 (6)0.0041 (6)
N30.0280 (7)0.0361 (7)0.0276 (6)0.0057 (6)0.0063 (5)0.0072 (5)
N40.0309 (7)0.0381 (8)0.0310 (7)0.0043 (6)0.0068 (6)0.0083 (6)
N50.0348 (10)0.0588 (12)0.0699 (14)0.0003 (9)0.0002 (9)−0.0045 (10)
O10.0376 (7)0.0657 (9)0.0394 (7)0.0221 (7)0.0121 (6)0.0219 (6)
O20.0397 (10)0.0808 (15)0.144 (2)−0.0193 (10)−0.0013 (12)0.0271 (14)
O30.0505 (11)0.1096 (17)0.0642 (12)0.0057 (11)−0.0134 (9)0.0150 (11)
C10.0357 (10)0.0531 (11)0.0356 (9)0.0142 (9)0.0050 (7)0.0100 (8)
C20.0512 (12)0.0492 (11)0.0379 (10)0.0227 (10)0.0005 (8)0.0052 (8)
C30.0614 (14)0.0369 (10)0.0472 (11)0.0146 (9)0.0109 (10)0.0109 (8)
C40.0462 (12)0.0482 (12)0.0640 (14)0.0089 (10)0.0117 (10)0.0162 (10)
C50.0370 (10)0.0531 (12)0.0483 (11)0.0151 (9)0.0045 (8)0.0099 (9)
C60.0361 (9)0.0473 (10)0.0274 (8)0.0153 (8)0.0051 (7)0.0060 (7)
C70.0338 (10)0.0613 (12)0.0345 (9)0.0139 (9)0.0063 (7)0.0156 (8)
C80.0308 (9)0.0439 (10)0.0287 (8)0.0090 (7)0.0048 (6)0.0046 (7)
C90.0328 (8)0.0338 (8)0.0285 (7)0.0086 (7)0.0076 (6)0.0050 (6)
C100.0283 (8)0.0348 (8)0.0291 (8)0.0071 (7)0.0062 (6)0.0073 (6)
C110.0302 (8)0.0349 (8)0.0295 (8)0.0083 (7)0.0086 (6)0.0075 (6)
C120.0316 (9)0.0332 (8)0.0328 (8)0.0049 (7)0.0087 (7)0.0074 (6)
C130.0331 (9)0.0427 (10)0.0329 (8)0.0063 (8)0.0058 (7)0.0053 (7)
C140.0309 (9)0.0404 (10)0.0457 (10)0.0031 (8)0.0069 (8)0.0002 (8)
C150.0408 (11)0.0304 (9)0.0591 (12)0.0004 (8)0.0172 (9)0.0059 (8)
C160.0346 (9)0.0352 (9)0.0315 (8)0.0056 (7)0.0082 (7)0.0046 (7)
C170.0302 (8)0.0395 (9)0.0274 (8)0.0073 (7)0.0052 (6)0.0037 (6)
C180.0448 (11)0.0387 (9)0.0372 (9)0.0115 (8)0.0118 (8)0.0053 (7)
C190.0466 (11)0.0532 (12)0.0327 (9)0.0178 (9)0.0138 (8)0.0031 (8)
C200.0331 (9)0.0540 (11)0.0263 (8)0.0086 (8)0.0047 (7)0.0089 (7)
C210.0434 (11)0.0495 (11)0.0341 (9)0.0201 (9)0.0051 (8)0.0118 (8)
C220.0389 (10)0.0496 (10)0.0278 (8)0.0192 (8)0.0060 (7)0.0055 (7)
S1—C91.7342 (18)C5—C61.386 (3)
S1—C101.7727 (18)C5—H5A0.93
S2—C151.694 (2)C7—C81.486 (3)
S2—C121.7330 (17)C7—H7A0.97
Cl1—C31.736 (2)C7—H7B0.97
Cl2—C201.7386 (18)C10—C161.339 (2)
N1—C81.302 (2)C10—C111.483 (2)
N1—N21.403 (2)C11—C121.467 (2)
N2—C91.303 (2)C12—C131.364 (3)
N3—C91.364 (2)C13—C141.413 (3)
N3—C81.376 (2)C13—H13A0.93
N3—N41.383 (2)C14—C151.354 (3)
N4—C111.296 (2)C15—H15A0.93
N5—O31.210 (3)C16—C171.468 (2)
N5—O21.221 (3)C16—H16A0.93
N5—C141.449 (3)C17—C221.391 (3)
O1—C61.375 (2)C17—C181.397 (3)
O1—C71.410 (2)C18—C191.384 (3)
C1—C21.382 (3)C18—H18A0.93
C1—C61.391 (3)C19—C201.377 (3)
C1—H1A0.93C19—H19A0.93
C2—C31.378 (3)C20—C211.381 (3)
C2—H2A0.93C21—C221.383 (3)
C3—C41.381 (3)C21—H21A0.93
C4—C51.378 (3)C22—H22A0.93
C4—H4A0.93
C9—S1—C1095.62 (8)N3—C9—S1121.40 (13)
C15—S2—C1292.18 (10)C16—C10—C11122.26 (16)
C8—N1—N2107.87 (15)C16—C10—S1122.39 (13)
C9—N2—N1106.29 (15)C11—C10—S1115.32 (12)
C9—N3—C8104.63 (14)N4—C11—C12114.57 (15)
C9—N3—N4128.75 (14)N4—C11—C10125.55 (16)
C8—N3—N4126.23 (14)C12—C11—C10119.85 (15)
C11—N4—N3115.80 (14)C13—C12—C11128.47 (16)
O3—N5—O2124.2 (2)C13—C12—S2111.57 (14)
O3—N5—C14118.5 (2)C11—C12—S2119.62 (13)
O2—N5—C14117.2 (2)C12—C13—C14110.48 (17)
C6—O1—C7115.44 (15)C12—C13—H13A124.8
C2—C1—C6119.61 (19)C14—C13—H13A124.8
C2—C1—H1A120.2C15—C14—C13115.29 (18)
C6—C1—H1A120.2C15—C14—N5122.83 (19)
C3—C2—C1119.4 (2)C13—C14—N5121.8 (2)
C3—C2—H2A120.3C14—C15—S2110.47 (15)
C1—C2—H2A120.3C14—C15—H15A124.8
C2—C3—C4121.7 (2)S2—C15—H15A124.8
C2—C3—Cl1119.05 (18)C10—C16—C17127.24 (17)
C4—C3—Cl1119.29 (18)C10—C16—H16A116.4
C5—C4—C3118.8 (2)C17—C16—H16A116.4
C5—C4—H4A120.6C22—C17—C18118.34 (16)
C3—C4—H4A120.6C22—C17—C16122.56 (16)
C4—C5—C6120.4 (2)C18—C17—C16119.10 (17)
C4—C5—H5A119.8C19—C18—C17120.80 (18)
C6—C5—H5A119.8C19—C18—H18A119.6
O1—C6—C5116.08 (17)C17—C18—H18A119.6
O1—C6—C1123.84 (17)C20—C19—C18119.36 (18)
C5—C6—C1120.07 (18)C20—C19—H19A120.3
O1—C7—C8109.98 (16)C18—C19—H19A120.3
O1—C7—H7A109.7C19—C20—C21121.20 (17)
C8—C7—H7A109.7C19—C20—Cl2119.24 (15)
O1—C7—H7B109.7C21—C20—Cl2119.55 (16)
C8—C7—H7B109.7C20—C21—C22119.05 (18)
H7A—C7—H7B108.2C20—C21—H21A120.5
N1—C8—N3109.93 (16)C22—C21—H21A120.5
N1—C8—C7124.21 (17)C21—C22—C17121.21 (17)
N3—C8—C7125.52 (17)C21—C22—H22A119.4
N2—C9—N3111.26 (15)C17—C22—H22A119.4
N2—C9—S1127.32 (14)
C8—N1—N2—C9−0.1 (2)C16—C10—C11—N4−140.1 (2)
C9—N3—N4—C11−21.5 (3)S1—C10—C11—N438.2 (2)
C8—N3—N4—C11166.81 (17)C16—C10—C11—C1242.0 (3)
C6—C1—C2—C30.0 (3)S1—C10—C11—C12−139.59 (14)
C1—C2—C3—C4−1.3 (3)N4—C11—C12—C13−156.04 (19)
C1—C2—C3—Cl1178.71 (16)C10—C11—C12—C1322.0 (3)
C2—C3—C4—C50.8 (4)N4—C11—C12—S216.7 (2)
Cl1—C3—C4—C5−179.26 (18)C10—C11—C12—S2−165.26 (13)
C3—C4—C5—C61.1 (4)C15—S2—C12—C13−0.15 (16)
C7—O1—C6—C5161.28 (18)C15—S2—C12—C11−174.03 (15)
C7—O1—C6—C1−19.9 (3)C11—C12—C13—C14173.10 (18)
C4—C5—C6—O1176.5 (2)S2—C12—C13—C14−0.1 (2)
C4—C5—C6—C1−2.4 (3)C12—C13—C14—C150.4 (3)
C2—C1—C6—O1−176.98 (18)C12—C13—C14—N5−176.46 (18)
C2—C1—C6—C51.8 (3)O3—N5—C14—C15−178.6 (2)
C6—O1—C7—C8−172.11 (16)O2—N5—C14—C151.6 (4)
N2—N1—C8—N3−0.7 (2)O3—N5—C14—C13−2.0 (3)
N2—N1—C8—C7−174.39 (17)O2—N5—C14—C13178.2 (2)
C9—N3—C8—N11.1 (2)C13—C14—C15—S2−0.5 (2)
N4—N3—C8—N1174.43 (16)N5—C14—C15—S2176.31 (17)
C9—N3—C8—C7174.73 (17)C12—S2—C15—C140.37 (16)
N4—N3—C8—C7−12.0 (3)C11—C10—C16—C17177.31 (17)
O1—C7—C8—N1−132.7 (2)S1—C10—C16—C17−0.9 (3)
O1—C7—C8—N354.6 (3)C10—C16—C17—C2239.3 (3)
N1—N2—C9—N30.8 (2)C10—C16—C17—C18−141.3 (2)
N1—N2—C9—S1−177.89 (13)C22—C17—C18—C19−2.3 (3)
C8—N3—C9—N2−1.18 (19)C16—C17—C18—C19178.31 (18)
N4—N3—C9—N2−174.25 (16)C17—C18—C19—C200.9 (3)
C8—N3—C9—S1177.59 (13)C18—C19—C20—C210.7 (3)
N4—N3—C9—S14.5 (2)C18—C19—C20—Cl2179.75 (16)
C10—S1—C9—N2−155.83 (17)C19—C20—C21—C22−0.8 (3)
C10—S1—C9—N325.61 (15)Cl2—C20—C21—C22−179.87 (15)
C9—S1—C10—C16135.40 (16)C20—C21—C22—C17−0.6 (3)
C9—S1—C10—C11−42.97 (14)C18—C17—C22—C212.2 (3)
N3—N4—C11—C12175.41 (15)C16—C17—C22—C21−178.45 (18)
N3—N4—C11—C10−2.5 (3)
D—H···AD—HH···AD···AD—H···A
C15—H15A···N2i0.932.603.495 (3)162
C21—H21A···Cl1ii0.932.813.691 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15A⋯N2i0.932.603.495 (3)162
C21—H21A⋯Cl1ii0.932.813.691 (2)159

Symmetry codes: (i) ; (ii) .

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Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

5.  3-Phenyl-4-{3-[(p-tol-yloxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

6.  Diethyl 3,8-dimethyl-4,7-diazadeca-2,8-dienedioate.

Authors:  Zhi-Min Jin; Li Li; Mei-Chao Li; Mao-Lin Hu; Liang Shen
Journal:  Acta Crystallogr C       Date:  2004-08-11       Impact factor: 1.172

7.  Liquid chromatography-tandem mass spectrometric method for the analysis of fluconazole and evaluation of the impact of phenolic compounds on the concentration of fluconazole in Candida albicans.

Authors:  Shujuan Sun; Hongxiang Lou; Yanhui Gao; Peihong Fan; Bin Ma; Weiying Ge; Xiaoning Wang
Journal:  J Pharm Biomed Anal       Date:  2004-03-10       Impact factor: 3.935

8.  4-[3-(Phen-oxy-meth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-3-(p-tol-yl)sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

9.  4-[3-(1-Naphthyl-oxymeth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-3-p-tolyl-sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-22

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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