| Literature DB >> 21588457 |
Jia Hao Goh, Hoong-Kun Fun, B Kalluraya.
Abstract
In the title triazolothia-diazine derivative, C(20)H(16)N(6)O(3)S {systematic name: 3-(4-methyl-phen-yl)-4-[3-(phen-oxy-meth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-1,2,3-oxadiazol-3-ium-5-olate}, an S(6) ring motif is generated by an intra-molecular C-H⋯O hydrogen bond. The 3,6-dihydro-1,3,4-thia-diazine ring adopts a twist-boat conformation. The dihedral angle between the 1,2,3-oxadiazole and 1,2,4-triazole rings is 46.45 (14)°. The 1,2,3-oxadiazole ring is inclined at dihedral angle of 59.49 (13)° with respect to the benzene ring attached to it. In the crystal structure, inter-molecular C-H⋯O and C-H⋯N hydrogen bonds link neighbouring mol-ecules into two-mol-ecule-thick arrays parallel to the bc plane. A short S⋯O inter-action [2.9565 (19) Å] also occurs.Entities:
Year: 2010 PMID: 21588457 PMCID: PMC3007409 DOI: 10.1107/S1600536810029910
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H16N6O3S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4257 reflections |
| θ = 2.7–30.6° | |
| µ = 0.21 mm−1 | |
| β = 96.127 (2)° | Block, colourless |
| 0.26 × 0.13 × 0.07 mm | |
| Bruker SMART APEXII CCD diffractometer | 4318 independent reflections |
| Radiation source: fine-focus sealed tube | 2829 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 17653 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4318 reflections | (Δ/σ)max = 0.003 |
| 272 parameters | Δρmax = 0.67 e Å−3 |
| 0 restraints | Δρmin = −0.53 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.06014 (3) | 0.33229 (8) | 0.37690 (6) | 0.01451 (18) | |
| O1 | 0.28045 (8) | 0.2544 (2) | 0.08679 (15) | 0.0183 (5) | |
| O2 | 0.10735 (9) | −0.3314 (2) | 0.48621 (15) | 0.0174 (4) | |
| O3 | 0.01271 (9) | −0.1961 (2) | 0.43267 (15) | 0.0168 (4) | |
| N1 | 0.16326 (10) | 0.4933 (3) | 0.13016 (18) | 0.0159 (5) | |
| N2 | 0.12096 (10) | 0.5222 (3) | 0.21876 (19) | 0.0159 (5) | |
| N3 | 0.14032 (10) | 0.2588 (3) | 0.20962 (18) | 0.0119 (5) | |
| N4 | 0.15133 (10) | 0.0982 (3) | 0.24765 (18) | 0.0134 (5) | |
| N5 | 0.17122 (11) | −0.3211 (3) | 0.46629 (19) | 0.0167 (5) | |
| N6 | 0.17491 (10) | −0.1933 (3) | 0.39705 (18) | 0.0130 (5) | |
| C1 | 0.38786 (14) | 0.2084 (4) | 0.0490 (2) | 0.0226 (7) | |
| H1A | 0.4012 | 0.2624 | 0.1204 | 0.027* | |
| C2 | 0.43384 (14) | 0.1464 (4) | −0.0207 (3) | 0.0282 (8) | |
| H2A | 0.4779 | 0.1602 | 0.0040 | 0.034* | |
| C3 | 0.41449 (14) | 0.0641 (4) | −0.1269 (3) | 0.0263 (7) | |
| H3A | 0.4453 | 0.0212 | −0.1730 | 0.032* | |
| C4 | 0.34920 (14) | 0.0469 (4) | −0.1629 (3) | 0.0235 (7) | |
| H4A | 0.3361 | −0.0070 | −0.2345 | 0.028* | |
| C5 | 0.30230 (14) | 0.1081 (4) | −0.0949 (2) | 0.0194 (7) | |
| H5A | 0.2583 | 0.0949 | −0.1202 | 0.023* | |
| C6 | 0.32231 (13) | 0.1897 (3) | 0.0121 (2) | 0.0168 (6) | |
| C7 | 0.21295 (12) | 0.2477 (3) | 0.0432 (2) | 0.0149 (6) | |
| H7A | 0.1988 | 0.1348 | 0.0363 | 0.018* | |
| H7B | 0.2060 | 0.2974 | −0.0357 | 0.018* | |
| C8 | 0.17459 (12) | 0.3361 (3) | 0.1279 (2) | 0.0142 (6) | |
| C9 | 0.10811 (12) | 0.3793 (3) | 0.2631 (2) | 0.0123 (6) | |
| C10 | 0.04330 (12) | 0.1268 (3) | 0.3200 (2) | 0.0148 (6) | |
| H10A | 0.0185 | 0.0674 | 0.3746 | 0.018* | |
| H10B | 0.0175 | 0.1323 | 0.2424 | 0.018* | |
| C11 | 0.10610 (12) | 0.0393 (3) | 0.3078 (2) | 0.0125 (6) | |
| C12 | 0.11699 (12) | −0.1155 (3) | 0.3677 (2) | 0.0123 (6) | |
| C13 | 0.07074 (14) | −0.2057 (3) | 0.4260 (2) | 0.0143 (6) | |
| C14 | 0.24014 (12) | −0.1537 (3) | 0.3708 (2) | 0.0137 (6) | |
| C15 | 0.28634 (13) | −0.1262 (3) | 0.4668 (2) | 0.0182 (6) | |
| H15A | 0.2749 | −0.1266 | 0.5449 | 0.022* | |
| C16 | 0.35008 (14) | −0.0980 (4) | 0.4450 (3) | 0.0228 (7) | |
| H16A | 0.3817 | −0.0798 | 0.5092 | 0.027* | |
| C17 | 0.36760 (14) | −0.0964 (4) | 0.3281 (3) | 0.0213 (7) | |
| C18 | 0.31939 (13) | −0.1232 (3) | 0.2334 (2) | 0.0206 (7) | |
| H18A | 0.3305 | −0.1209 | 0.1551 | 0.025* | |
| C19 | 0.25567 (13) | −0.1529 (3) | 0.2528 (2) | 0.0178 (6) | |
| H19A | 0.2240 | −0.1718 | 0.1889 | 0.021* | |
| C20 | 0.43702 (14) | −0.0674 (4) | 0.3043 (3) | 0.0351 (8) | |
| H20D | 0.4422 | −0.0966 | 0.2229 | 0.053* | |
| H20A | 0.4655 | −0.1330 | 0.3581 | 0.053* | |
| H20B | 0.4476 | 0.0458 | 0.3169 | 0.053* |
| S1 | 0.0213 (4) | 0.0098 (4) | 0.0135 (3) | 0.0003 (3) | 0.0064 (2) | 0.0003 (3) |
| O1 | 0.0180 (10) | 0.0225 (12) | 0.0146 (9) | 0.0027 (9) | 0.0028 (7) | −0.0026 (9) |
| O2 | 0.0265 (11) | 0.0118 (11) | 0.0144 (9) | 0.0002 (9) | 0.0041 (8) | 0.0034 (9) |
| O3 | 0.0196 (10) | 0.0162 (11) | 0.0150 (9) | −0.0027 (9) | 0.0040 (7) | 0.0016 (9) |
| N1 | 0.0233 (13) | 0.0158 (14) | 0.0094 (10) | −0.0014 (11) | 0.0052 (9) | 0.0023 (11) |
| N2 | 0.0229 (13) | 0.0122 (13) | 0.0130 (11) | 0.0001 (11) | 0.0039 (9) | 0.0019 (11) |
| N3 | 0.0174 (12) | 0.0089 (12) | 0.0105 (10) | −0.0002 (10) | 0.0059 (9) | 0.0032 (10) |
| N4 | 0.0242 (13) | 0.0075 (12) | 0.0084 (10) | 0.0003 (10) | 0.0017 (9) | 0.0002 (10) |
| N5 | 0.0247 (13) | 0.0109 (13) | 0.0148 (11) | −0.0014 (11) | 0.0039 (9) | −0.0016 (11) |
| N6 | 0.0238 (12) | 0.0072 (12) | 0.0079 (10) | −0.0003 (10) | 0.0015 (9) | −0.0003 (10) |
| C1 | 0.0280 (16) | 0.0200 (17) | 0.0193 (14) | 0.0012 (14) | 0.0003 (12) | −0.0037 (14) |
| C2 | 0.0205 (16) | 0.030 (2) | 0.0342 (17) | 0.0029 (14) | 0.0025 (13) | 0.0007 (17) |
| C3 | 0.0305 (18) | 0.0229 (18) | 0.0278 (16) | 0.0045 (15) | 0.0143 (13) | 0.0008 (15) |
| C4 | 0.0322 (17) | 0.0199 (17) | 0.0193 (14) | 0.0023 (15) | 0.0079 (12) | −0.0012 (14) |
| C5 | 0.0237 (15) | 0.0181 (17) | 0.0169 (14) | −0.0030 (13) | 0.0040 (11) | 0.0005 (14) |
| C6 | 0.0217 (15) | 0.0133 (16) | 0.0161 (13) | 0.0035 (13) | 0.0058 (11) | 0.0055 (13) |
| C7 | 0.0207 (14) | 0.0135 (16) | 0.0109 (12) | 0.0000 (12) | 0.0039 (10) | 0.0030 (12) |
| C8 | 0.0195 (14) | 0.0126 (15) | 0.0107 (12) | −0.0032 (13) | 0.0015 (10) | 0.0031 (13) |
| C9 | 0.0167 (14) | 0.0087 (15) | 0.0117 (12) | −0.0004 (12) | 0.0020 (10) | −0.0001 (12) |
| C10 | 0.0205 (14) | 0.0086 (15) | 0.0156 (13) | −0.0019 (12) | 0.0025 (11) | 0.0021 (12) |
| C11 | 0.0177 (14) | 0.0122 (15) | 0.0074 (12) | −0.0003 (12) | 0.0009 (10) | −0.0039 (12) |
| C12 | 0.0164 (14) | 0.0105 (15) | 0.0103 (12) | 0.0006 (12) | 0.0028 (10) | −0.0036 (12) |
| C13 | 0.0304 (16) | 0.0058 (15) | 0.0070 (12) | 0.0004 (13) | 0.0035 (11) | −0.0005 (12) |
| C14 | 0.0172 (14) | 0.0087 (15) | 0.0154 (13) | 0.0023 (12) | 0.0023 (10) | −0.0015 (13) |
| C15 | 0.0287 (16) | 0.0152 (16) | 0.0111 (12) | 0.0022 (13) | 0.0040 (11) | 0.0014 (13) |
| C16 | 0.0243 (16) | 0.0198 (17) | 0.0236 (15) | 0.0013 (14) | −0.0002 (12) | −0.0005 (15) |
| C17 | 0.0239 (16) | 0.0148 (16) | 0.0265 (16) | 0.0010 (13) | 0.0083 (12) | 0.0040 (14) |
| C18 | 0.0293 (16) | 0.0177 (17) | 0.0164 (13) | 0.0048 (14) | 0.0097 (12) | 0.0033 (13) |
| C19 | 0.0291 (16) | 0.0108 (16) | 0.0134 (13) | 0.0039 (13) | 0.0023 (11) | 0.0005 (13) |
| C20 | 0.0268 (17) | 0.043 (2) | 0.0368 (19) | −0.0018 (17) | 0.0080 (14) | 0.0098 (18) |
| S1—C9 | 1.739 (3) | C4—H4A | 0.9300 |
| S1—C10 | 1.820 (3) | C5—C6 | 1.395 (4) |
| O1—C6 | 1.372 (3) | C5—H5A | 0.9300 |
| O1—C7 | 1.428 (3) | C7—C8 | 1.487 (4) |
| O2—N5 | 1.364 (3) | C7—H7A | 0.9700 |
| O2—C13 | 1.406 (3) | C7—H7B | 0.9700 |
| O3—C13 | 1.212 (3) | C10—C11 | 1.501 (4) |
| N1—C8 | 1.310 (3) | C10—H10A | 0.9700 |
| N1—N2 | 1.410 (3) | C10—H10B | 0.9700 |
| N2—C9 | 1.310 (3) | C11—C12 | 1.441 (4) |
| N3—C9 | 1.364 (3) | C12—C13 | 1.420 (4) |
| N3—C8 | 1.371 (3) | C14—C15 | 1.378 (4) |
| N3—N4 | 1.395 (3) | C14—C19 | 1.393 (3) |
| N4—C11 | 1.301 (3) | C15—C16 | 1.384 (4) |
| N5—N6 | 1.310 (3) | C15—H15A | 0.9300 |
| N6—C12 | 1.364 (3) | C16—C17 | 1.395 (4) |
| N6—C14 | 1.446 (3) | C16—H16A | 0.9300 |
| C1—C6 | 1.381 (4) | C17—C18 | 1.392 (4) |
| C1—C2 | 1.388 (4) | C17—C20 | 1.505 (4) |
| C1—H1A | 0.9300 | C18—C19 | 1.378 (4) |
| C2—C3 | 1.389 (4) | C18—H18A | 0.9300 |
| C2—H2A | 0.9300 | C19—H19A | 0.9300 |
| C3—C4 | 1.373 (4) | C20—H20D | 0.9600 |
| C3—H3A | 0.9300 | C20—H20A | 0.9600 |
| C4—C5 | 1.389 (4) | C20—H20B | 0.9600 |
| C9—S1—C10 | 92.89 (12) | N2—C9—S1 | 129.0 (2) |
| C6—O1—C7 | 115.64 (19) | N3—C9—S1 | 120.3 (2) |
| N5—O2—C13 | 110.89 (19) | C11—C10—S1 | 109.82 (18) |
| C8—N1—N2 | 107.7 (2) | C11—C10—H10A | 109.7 |
| C9—N2—N1 | 106.4 (2) | S1—C10—H10A | 109.7 |
| C9—N3—C8 | 105.7 (2) | C11—C10—H10B | 109.7 |
| C9—N3—N4 | 128.3 (2) | S1—C10—H10B | 109.7 |
| C8—N3—N4 | 124.1 (2) | H10A—C10—H10B | 108.2 |
| C11—N4—N3 | 113.9 (2) | N4—C11—C12 | 118.8 (2) |
| N6—N5—O2 | 105.33 (19) | N4—C11—C10 | 123.0 (2) |
| N5—N6—C12 | 114.3 (2) | C12—C11—C10 | 118.1 (2) |
| N5—N6—C14 | 114.4 (2) | N6—C12—C13 | 105.2 (2) |
| C12—N6—C14 | 131.2 (2) | N6—C12—C11 | 127.8 (2) |
| C6—C1—C2 | 120.0 (3) | C13—C12—C11 | 126.3 (2) |
| C6—C1—H1A | 120.0 | O3—C13—O2 | 120.2 (2) |
| C2—C1—H1A | 120.0 | O3—C13—C12 | 135.5 (3) |
| C1—C2—C3 | 120.5 (3) | O2—C13—C12 | 104.3 (2) |
| C1—C2—H2A | 119.8 | C15—C14—C19 | 121.9 (2) |
| C3—C2—H2A | 119.8 | C15—C14—N6 | 117.5 (2) |
| C4—C3—C2 | 119.0 (3) | C19—C14—N6 | 120.5 (2) |
| C4—C3—H3A | 120.5 | C14—C15—C16 | 118.8 (2) |
| C2—C3—H3A | 120.5 | C14—C15—H15A | 120.6 |
| C3—C4—C5 | 121.5 (3) | C16—C15—H15A | 120.6 |
| C3—C4—H4A | 119.2 | C15—C16—C17 | 120.9 (3) |
| C5—C4—H4A | 119.2 | C15—C16—H16A | 119.5 |
| C4—C5—C6 | 119.0 (3) | C17—C16—H16A | 119.5 |
| C4—C5—H5A | 120.5 | C18—C17—C16 | 118.5 (3) |
| C6—C5—H5A | 120.5 | C18—C17—C20 | 120.6 (3) |
| O1—C6—C1 | 115.9 (2) | C16—C17—C20 | 121.0 (3) |
| O1—C6—C5 | 124.1 (2) | C19—C18—C17 | 121.7 (2) |
| C1—C6—C5 | 120.0 (3) | C19—C18—H18A | 119.1 |
| O1—C7—C8 | 109.3 (2) | C17—C18—H18A | 119.1 |
| O1—C7—H7A | 109.8 | C18—C19—C14 | 118.1 (2) |
| C8—C7—H7A | 109.8 | C18—C19—H19A | 121.0 |
| O1—C7—H7B | 109.8 | C14—C19—H19A | 121.0 |
| C8—C7—H7B | 109.8 | C17—C20—H20D | 109.5 |
| H7A—C7—H7B | 108.3 | C17—C20—H20A | 109.5 |
| N1—C8—N3 | 109.6 (2) | H20D—C20—H20A | 109.5 |
| N1—C8—C7 | 126.9 (2) | C17—C20—H20B | 109.5 |
| N3—C8—C7 | 123.3 (2) | H20D—C20—H20B | 109.5 |
| N2—C9—N3 | 110.6 (2) | H20A—C20—H20B | 109.5 |
| C8—N1—N2—C9 | −1.4 (3) | C9—S1—C10—C11 | 54.65 (19) |
| C9—N3—N4—C11 | 30.0 (3) | N3—N4—C11—C12 | −170.4 (2) |
| C8—N3—N4—C11 | −167.9 (2) | N3—N4—C11—C10 | 8.3 (3) |
| C13—O2—N5—N6 | 0.5 (2) | S1—C10—C11—N4 | −53.7 (3) |
| O2—N5—N6—C12 | −0.3 (3) | S1—C10—C11—C12 | 125.0 (2) |
| O2—N5—N6—C14 | 176.24 (18) | N5—N6—C12—C13 | 0.1 (3) |
| C6—C1—C2—C3 | −0.6 (5) | C14—N6—C12—C13 | −175.8 (2) |
| C1—C2—C3—C4 | 0.9 (5) | N5—N6—C12—C11 | 170.7 (2) |
| C2—C3—C4—C5 | −0.8 (4) | C14—N6—C12—C11 | −5.2 (4) |
| C3—C4—C5—C6 | 0.4 (4) | N4—C11—C12—N6 | 18.5 (4) |
| C7—O1—C6—C1 | 174.7 (2) | C10—C11—C12—N6 | −160.3 (2) |
| C7—O1—C6—C5 | −5.8 (4) | N4—C11—C12—C13 | −172.8 (2) |
| C2—C1—C6—O1 | 179.8 (3) | C10—C11—C12—C13 | 8.4 (4) |
| C2—C1—C6—C5 | 0.2 (4) | N5—O2—C13—O3 | 179.4 (2) |
| C4—C5—C6—O1 | −179.7 (3) | N5—O2—C13—C12 | −0.4 (2) |
| C4—C5—C6—C1 | −0.1 (4) | N6—C12—C13—O3 | −179.6 (3) |
| C6—O1—C7—C8 | −174.6 (2) | C11—C12—C13—O3 | 9.6 (5) |
| N2—N1—C8—N3 | 1.3 (3) | N6—C12—C13—O2 | 0.2 (3) |
| N2—N1—C8—C7 | 175.7 (2) | C11—C12—C13—O2 | −170.6 (2) |
| C9—N3—C8—N1 | −0.8 (3) | N5—N6—C14—C15 | −56.8 (3) |
| N4—N3—C8—N1 | −166.3 (2) | C12—N6—C14—C15 | 119.1 (3) |
| C9—N3—C8—C7 | −175.4 (2) | N5—N6—C14—C19 | 119.8 (3) |
| N4—N3—C8—C7 | 19.1 (4) | C12—N6—C14—C19 | −64.4 (4) |
| O1—C7—C8—N1 | 84.4 (3) | C19—C14—C15—C16 | −0.4 (4) |
| O1—C7—C8—N3 | −101.9 (3) | N6—C14—C15—C16 | 176.1 (2) |
| N1—N2—C9—N3 | 0.8 (3) | C14—C15—C16—C17 | 0.3 (4) |
| N1—N2—C9—S1 | 178.78 (18) | C15—C16—C17—C18 | 0.3 (4) |
| C8—N3—C9—N2 | −0.1 (3) | C15—C16—C17—C20 | −179.4 (3) |
| N4—N3—C9—N2 | 164.6 (2) | C16—C17—C18—C19 | −0.9 (4) |
| C8—N3—C9—S1 | −178.20 (18) | C20—C17—C18—C19 | 178.8 (3) |
| N4—N3—C9—S1 | −13.6 (3) | C17—C18—C19—C14 | 0.8 (4) |
| C10—S1—C9—N2 | 154.7 (2) | C15—C14—C19—C18 | −0.1 (4) |
| C10—S1—C9—N3 | −27.6 (2) | N6—C14—C19—C18 | −176.5 (2) |
| H··· | ||||
| C10—H10A···O3 | 0.97 | 2.26 | 3.026 (3) | 135 |
| C10—H10A···O3i | 0.97 | 2.55 | 3.165 (3) | 122 |
| C10—H10B···O3ii | 0.97 | 2.44 | 3.279 (3) | 145 |
| C19—H19A···N5iii | 0.93 | 2.61 | 3.491 (3) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C10—H10 | 0.97 | 2.26 | 3.026 (3) | 135 |
| C10—H10 | 0.97 | 2.55 | 3.165 (3) | 122 |
| C10—H10 | 0.97 | 2.44 | 3.279 (3) | 145 |
| C19—H19 | 0.93 | 2.61 | 3.491 (3) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) .