Literature DB >> 21588457

4-[3-(Phen-oxy-meth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-3-(p-tol-yl)sydnone.

Jia Hao Goh, Hoong-Kun Fun, B Kalluraya.   

Abstract

In the title triazolothia-diazine derivative, C(20)H(16)N(6)O(3)S {systematic name: 3-(4-methyl-phen-yl)-4-[3-(phen-oxy-meth-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl]-1,2,3-oxadiazol-3-ium-5-olate}, an S(6) ring motif is generated by an intra-molecular C-H⋯O hydrogen bond. The 3,6-dihydro-1,3,4-thia-diazine ring adopts a twist-boat conformation. The dihedral angle between the 1,2,3-oxadiazole and 1,2,4-triazole rings is 46.45 (14)°. The 1,2,3-oxadiazole ring is inclined at dihedral angle of 59.49 (13)° with respect to the benzene ring attached to it. In the crystal structure, inter-molecular C-H⋯O and C-H⋯N hydrogen bonds link neighbouring mol-ecules into two-mol-ecule-thick arrays parallel to the bc plane. A short S⋯O inter-action [2.9565 (19) Å] also occurs.

Entities:  

Year:  2010        PMID: 21588457      PMCID: PMC3007409          DOI: 10.1107/S1600536810029910

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of materials related to the title compound, see: Kalluraya & Rahiman (1997 ▶); Newton & Ramsden (1982 ▶); Wagner & Hill (1974 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For closely related structures, see: Goh et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H16N6O3S M = 420.45 Monoclinic, a = 20.6555 (7) Å b = 8.1918 (3) Å c = 11.1979 (4) Å β = 96.127 (2)° V = 1883.93 (12) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.26 × 0.13 × 0.07 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.947, T max = 0.985 17653 measured reflections 4318 independent reflections 2829 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.133 S = 1.03 4318 reflections 272 parameters H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.53 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029910/hb5566sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029910/hb5566Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N6O3SF(000) = 872
Mr = 420.45Dx = 1.482 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4257 reflections
a = 20.6555 (7) Åθ = 2.7–30.6°
b = 8.1918 (3) ŵ = 0.21 mm1
c = 11.1979 (4) ÅT = 100 K
β = 96.127 (2)°Block, colourless
V = 1883.93 (12) Å30.26 × 0.13 × 0.07 mm
Z = 4
Bruker SMART APEXII CCD diffractometer4318 independent reflections
Radiation source: fine-focus sealed tube2829 reflections with I > 2σ(I)
graphiteRint = 0.065
φ and ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −26→26
Tmin = 0.947, Tmax = 0.985k = −10→10
17653 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.060P)2 + 0.4167P] where P = (Fo2 + 2Fc2)/3
4318 reflections(Δ/σ)max = 0.003
272 parametersΔρmax = 0.67 e Å3
0 restraintsΔρmin = −0.53 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.06014 (3)0.33229 (8)0.37690 (6)0.01451 (18)
O10.28045 (8)0.2544 (2)0.08679 (15)0.0183 (5)
O20.10735 (9)−0.3314 (2)0.48621 (15)0.0174 (4)
O30.01271 (9)−0.1961 (2)0.43267 (15)0.0168 (4)
N10.16326 (10)0.4933 (3)0.13016 (18)0.0159 (5)
N20.12096 (10)0.5222 (3)0.21876 (19)0.0159 (5)
N30.14032 (10)0.2588 (3)0.20962 (18)0.0119 (5)
N40.15133 (10)0.0982 (3)0.24765 (18)0.0134 (5)
N50.17122 (11)−0.3211 (3)0.46629 (19)0.0167 (5)
N60.17491 (10)−0.1933 (3)0.39705 (18)0.0130 (5)
C10.38786 (14)0.2084 (4)0.0490 (2)0.0226 (7)
H1A0.40120.26240.12040.027*
C20.43384 (14)0.1464 (4)−0.0207 (3)0.0282 (8)
H2A0.47790.16020.00400.034*
C30.41449 (14)0.0641 (4)−0.1269 (3)0.0263 (7)
H3A0.44530.0212−0.17300.032*
C40.34920 (14)0.0469 (4)−0.1629 (3)0.0235 (7)
H4A0.3361−0.0070−0.23450.028*
C50.30230 (14)0.1081 (4)−0.0949 (2)0.0194 (7)
H5A0.25830.0949−0.12020.023*
C60.32231 (13)0.1897 (3)0.0121 (2)0.0168 (6)
C70.21295 (12)0.2477 (3)0.0432 (2)0.0149 (6)
H7A0.19880.13480.03630.018*
H7B0.20600.2974−0.03570.018*
C80.17459 (12)0.3361 (3)0.1279 (2)0.0142 (6)
C90.10811 (12)0.3793 (3)0.2631 (2)0.0123 (6)
C100.04330 (12)0.1268 (3)0.3200 (2)0.0148 (6)
H10A0.01850.06740.37460.018*
H10B0.01750.13230.24240.018*
C110.10610 (12)0.0393 (3)0.3078 (2)0.0125 (6)
C120.11699 (12)−0.1155 (3)0.3677 (2)0.0123 (6)
C130.07074 (14)−0.2057 (3)0.4260 (2)0.0143 (6)
C140.24014 (12)−0.1537 (3)0.3708 (2)0.0137 (6)
C150.28634 (13)−0.1262 (3)0.4668 (2)0.0182 (6)
H15A0.2749−0.12660.54490.022*
C160.35008 (14)−0.0980 (4)0.4450 (3)0.0228 (7)
H16A0.3817−0.07980.50920.027*
C170.36760 (14)−0.0964 (4)0.3281 (3)0.0213 (7)
C180.31939 (13)−0.1232 (3)0.2334 (2)0.0206 (7)
H18A0.3305−0.12090.15510.025*
C190.25567 (13)−0.1529 (3)0.2528 (2)0.0178 (6)
H19A0.2240−0.17180.18890.021*
C200.43702 (14)−0.0674 (4)0.3043 (3)0.0351 (8)
H20D0.4422−0.09660.22290.053*
H20A0.4655−0.13300.35810.053*
H20B0.44760.04580.31690.053*
U11U22U33U12U13U23
S10.0213 (4)0.0098 (4)0.0135 (3)0.0003 (3)0.0064 (2)0.0003 (3)
O10.0180 (10)0.0225 (12)0.0146 (9)0.0027 (9)0.0028 (7)−0.0026 (9)
O20.0265 (11)0.0118 (11)0.0144 (9)0.0002 (9)0.0041 (8)0.0034 (9)
O30.0196 (10)0.0162 (11)0.0150 (9)−0.0027 (9)0.0040 (7)0.0016 (9)
N10.0233 (13)0.0158 (14)0.0094 (10)−0.0014 (11)0.0052 (9)0.0023 (11)
N20.0229 (13)0.0122 (13)0.0130 (11)0.0001 (11)0.0039 (9)0.0019 (11)
N30.0174 (12)0.0089 (12)0.0105 (10)−0.0002 (10)0.0059 (9)0.0032 (10)
N40.0242 (13)0.0075 (12)0.0084 (10)0.0003 (10)0.0017 (9)0.0002 (10)
N50.0247 (13)0.0109 (13)0.0148 (11)−0.0014 (11)0.0039 (9)−0.0016 (11)
N60.0238 (12)0.0072 (12)0.0079 (10)−0.0003 (10)0.0015 (9)−0.0003 (10)
C10.0280 (16)0.0200 (17)0.0193 (14)0.0012 (14)0.0003 (12)−0.0037 (14)
C20.0205 (16)0.030 (2)0.0342 (17)0.0029 (14)0.0025 (13)0.0007 (17)
C30.0305 (18)0.0229 (18)0.0278 (16)0.0045 (15)0.0143 (13)0.0008 (15)
C40.0322 (17)0.0199 (17)0.0193 (14)0.0023 (15)0.0079 (12)−0.0012 (14)
C50.0237 (15)0.0181 (17)0.0169 (14)−0.0030 (13)0.0040 (11)0.0005 (14)
C60.0217 (15)0.0133 (16)0.0161 (13)0.0035 (13)0.0058 (11)0.0055 (13)
C70.0207 (14)0.0135 (16)0.0109 (12)0.0000 (12)0.0039 (10)0.0030 (12)
C80.0195 (14)0.0126 (15)0.0107 (12)−0.0032 (13)0.0015 (10)0.0031 (13)
C90.0167 (14)0.0087 (15)0.0117 (12)−0.0004 (12)0.0020 (10)−0.0001 (12)
C100.0205 (14)0.0086 (15)0.0156 (13)−0.0019 (12)0.0025 (11)0.0021 (12)
C110.0177 (14)0.0122 (15)0.0074 (12)−0.0003 (12)0.0009 (10)−0.0039 (12)
C120.0164 (14)0.0105 (15)0.0103 (12)0.0006 (12)0.0028 (10)−0.0036 (12)
C130.0304 (16)0.0058 (15)0.0070 (12)0.0004 (13)0.0035 (11)−0.0005 (12)
C140.0172 (14)0.0087 (15)0.0154 (13)0.0023 (12)0.0023 (10)−0.0015 (13)
C150.0287 (16)0.0152 (16)0.0111 (12)0.0022 (13)0.0040 (11)0.0014 (13)
C160.0243 (16)0.0198 (17)0.0236 (15)0.0013 (14)−0.0002 (12)−0.0005 (15)
C170.0239 (16)0.0148 (16)0.0265 (16)0.0010 (13)0.0083 (12)0.0040 (14)
C180.0293 (16)0.0177 (17)0.0164 (13)0.0048 (14)0.0097 (12)0.0033 (13)
C190.0291 (16)0.0108 (16)0.0134 (13)0.0039 (13)0.0023 (11)0.0005 (13)
C200.0268 (17)0.043 (2)0.0368 (19)−0.0018 (17)0.0080 (14)0.0098 (18)
S1—C91.739 (3)C4—H4A0.9300
S1—C101.820 (3)C5—C61.395 (4)
O1—C61.372 (3)C5—H5A0.9300
O1—C71.428 (3)C7—C81.487 (4)
O2—N51.364 (3)C7—H7A0.9700
O2—C131.406 (3)C7—H7B0.9700
O3—C131.212 (3)C10—C111.501 (4)
N1—C81.310 (3)C10—H10A0.9700
N1—N21.410 (3)C10—H10B0.9700
N2—C91.310 (3)C11—C121.441 (4)
N3—C91.364 (3)C12—C131.420 (4)
N3—C81.371 (3)C14—C151.378 (4)
N3—N41.395 (3)C14—C191.393 (3)
N4—C111.301 (3)C15—C161.384 (4)
N5—N61.310 (3)C15—H15A0.9300
N6—C121.364 (3)C16—C171.395 (4)
N6—C141.446 (3)C16—H16A0.9300
C1—C61.381 (4)C17—C181.392 (4)
C1—C21.388 (4)C17—C201.505 (4)
C1—H1A0.9300C18—C191.378 (4)
C2—C31.389 (4)C18—H18A0.9300
C2—H2A0.9300C19—H19A0.9300
C3—C41.373 (4)C20—H20D0.9600
C3—H3A0.9300C20—H20A0.9600
C4—C51.389 (4)C20—H20B0.9600
C9—S1—C1092.89 (12)N2—C9—S1129.0 (2)
C6—O1—C7115.64 (19)N3—C9—S1120.3 (2)
N5—O2—C13110.89 (19)C11—C10—S1109.82 (18)
C8—N1—N2107.7 (2)C11—C10—H10A109.7
C9—N2—N1106.4 (2)S1—C10—H10A109.7
C9—N3—C8105.7 (2)C11—C10—H10B109.7
C9—N3—N4128.3 (2)S1—C10—H10B109.7
C8—N3—N4124.1 (2)H10A—C10—H10B108.2
C11—N4—N3113.9 (2)N4—C11—C12118.8 (2)
N6—N5—O2105.33 (19)N4—C11—C10123.0 (2)
N5—N6—C12114.3 (2)C12—C11—C10118.1 (2)
N5—N6—C14114.4 (2)N6—C12—C13105.2 (2)
C12—N6—C14131.2 (2)N6—C12—C11127.8 (2)
C6—C1—C2120.0 (3)C13—C12—C11126.3 (2)
C6—C1—H1A120.0O3—C13—O2120.2 (2)
C2—C1—H1A120.0O3—C13—C12135.5 (3)
C1—C2—C3120.5 (3)O2—C13—C12104.3 (2)
C1—C2—H2A119.8C15—C14—C19121.9 (2)
C3—C2—H2A119.8C15—C14—N6117.5 (2)
C4—C3—C2119.0 (3)C19—C14—N6120.5 (2)
C4—C3—H3A120.5C14—C15—C16118.8 (2)
C2—C3—H3A120.5C14—C15—H15A120.6
C3—C4—C5121.5 (3)C16—C15—H15A120.6
C3—C4—H4A119.2C15—C16—C17120.9 (3)
C5—C4—H4A119.2C15—C16—H16A119.5
C4—C5—C6119.0 (3)C17—C16—H16A119.5
C4—C5—H5A120.5C18—C17—C16118.5 (3)
C6—C5—H5A120.5C18—C17—C20120.6 (3)
O1—C6—C1115.9 (2)C16—C17—C20121.0 (3)
O1—C6—C5124.1 (2)C19—C18—C17121.7 (2)
C1—C6—C5120.0 (3)C19—C18—H18A119.1
O1—C7—C8109.3 (2)C17—C18—H18A119.1
O1—C7—H7A109.8C18—C19—C14118.1 (2)
C8—C7—H7A109.8C18—C19—H19A121.0
O1—C7—H7B109.8C14—C19—H19A121.0
C8—C7—H7B109.8C17—C20—H20D109.5
H7A—C7—H7B108.3C17—C20—H20A109.5
N1—C8—N3109.6 (2)H20D—C20—H20A109.5
N1—C8—C7126.9 (2)C17—C20—H20B109.5
N3—C8—C7123.3 (2)H20D—C20—H20B109.5
N2—C9—N3110.6 (2)H20A—C20—H20B109.5
C8—N1—N2—C9−1.4 (3)C9—S1—C10—C1154.65 (19)
C9—N3—N4—C1130.0 (3)N3—N4—C11—C12−170.4 (2)
C8—N3—N4—C11−167.9 (2)N3—N4—C11—C108.3 (3)
C13—O2—N5—N60.5 (2)S1—C10—C11—N4−53.7 (3)
O2—N5—N6—C12−0.3 (3)S1—C10—C11—C12125.0 (2)
O2—N5—N6—C14176.24 (18)N5—N6—C12—C130.1 (3)
C6—C1—C2—C3−0.6 (5)C14—N6—C12—C13−175.8 (2)
C1—C2—C3—C40.9 (5)N5—N6—C12—C11170.7 (2)
C2—C3—C4—C5−0.8 (4)C14—N6—C12—C11−5.2 (4)
C3—C4—C5—C60.4 (4)N4—C11—C12—N618.5 (4)
C7—O1—C6—C1174.7 (2)C10—C11—C12—N6−160.3 (2)
C7—O1—C6—C5−5.8 (4)N4—C11—C12—C13−172.8 (2)
C2—C1—C6—O1179.8 (3)C10—C11—C12—C138.4 (4)
C2—C1—C6—C50.2 (4)N5—O2—C13—O3179.4 (2)
C4—C5—C6—O1−179.7 (3)N5—O2—C13—C12−0.4 (2)
C4—C5—C6—C1−0.1 (4)N6—C12—C13—O3−179.6 (3)
C6—O1—C7—C8−174.6 (2)C11—C12—C13—O39.6 (5)
N2—N1—C8—N31.3 (3)N6—C12—C13—O20.2 (3)
N2—N1—C8—C7175.7 (2)C11—C12—C13—O2−170.6 (2)
C9—N3—C8—N1−0.8 (3)N5—N6—C14—C15−56.8 (3)
N4—N3—C8—N1−166.3 (2)C12—N6—C14—C15119.1 (3)
C9—N3—C8—C7−175.4 (2)N5—N6—C14—C19119.8 (3)
N4—N3—C8—C719.1 (4)C12—N6—C14—C19−64.4 (4)
O1—C7—C8—N184.4 (3)C19—C14—C15—C16−0.4 (4)
O1—C7—C8—N3−101.9 (3)N6—C14—C15—C16176.1 (2)
N1—N2—C9—N30.8 (3)C14—C15—C16—C170.3 (4)
N1—N2—C9—S1178.78 (18)C15—C16—C17—C180.3 (4)
C8—N3—C9—N2−0.1 (3)C15—C16—C17—C20−179.4 (3)
N4—N3—C9—N2164.6 (2)C16—C17—C18—C19−0.9 (4)
C8—N3—C9—S1−178.20 (18)C20—C17—C18—C19178.8 (3)
N4—N3—C9—S1−13.6 (3)C17—C18—C19—C140.8 (4)
C10—S1—C9—N2154.7 (2)C15—C14—C19—C18−0.1 (4)
C10—S1—C9—N3−27.6 (2)N6—C14—C19—C18−176.5 (2)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O30.972.263.026 (3)135
C10—H10A···O3i0.972.553.165 (3)122
C10—H10B···O3ii0.972.443.279 (3)145
C19—H19A···N5iii0.932.613.491 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O30.972.263.026 (3)135
C10—H10A⋯O3i0.972.553.165 (3)122
C10—H10B⋯O3ii0.972.443.279 (3)145
C19—H19A⋯N5iii0.932.613.491 (3)158

Symmetry codes: (i) ; (ii) ; (iii) .

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  6 in total
  2 in total

1.  7-(4-Chloro-benzyl-idene)-3-[(4-chloro-phen-oxy)meth-yl]-6-(4-nitro-thio-phen-2-yl)-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazine.

Authors:  Hoong-Kun Fun; Safra Izuani Jama Asik; Ibrahim Abdul Razak; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

2.  4-{3-[(2-Isopropyl-5-methyl-phen-oxy)meth-yl]-7H-1,2,4-triazolo[3,4-b][1,3,4]thia-diazin-6-yl}-3-(p-tol-yl)sydnone.

Authors:  Jia Hao Goh; Hoong-Kun Fun; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-04
  2 in total

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