Literature DB >> 21588060

3,3-Bis[(4-chloro-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Julio Zukerman-Schpector, Carlos A De Simone, Paulo R Olivato, Carlos R Cerqueira, Jean M M Santos, Edward R T Tiekink.   

Abstract

The piperidone ring in the title compound, C(18)H(17)Cl(2)NOS(2), has a distorted half-chair conformation. The S-bound benzene rings are approximately perpendicular to and splayed out of the mean plane through the piperidone ring [dihedral angles = 71.86 (13) and 46.94 (11)°]. In the crystal, C-H⋯O inter-actions link the mol-ecules into [010] supra-molecular chains with a helical topology. C-H⋯Cl and C-H⋯π inter-actions are also present.

Entities:  

Year:  2010        PMID: 21588060      PMCID: PMC3007065          DOI: 10.1107/S1600536810024347

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to β-thiocarbonyl compounds, see: Vinhato (2007 ▶); Olivato et al. (2009 ▶). For related structures, see: Zukerman-Schpector et al. (2006 ▶, 2008 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶). For further synthetic details, see: Hashmat & McDermott (2002 ▶); Zoretic & Soja (1976 ▶).

Experimental

Crystal data

C18H17Cl2NOS2 M = 398.37 Monoclinic, a = 8.0313 (2) Å b = 9.7460 (2) Å c = 24.2623 (7) Å β = 94.0767 (12)° V = 1894.28 (8) Å3 Z = 4 Mo Kα radiation μ = 0.57 mm−1 T = 290 K 0.33 × 0.30 × 0.29 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.82, T max = 0.85 12888 measured reflections 3288 independent reflections 2778 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.121 S = 1.05 3288 reflections 218 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.38 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024347/hb5512sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024347/hb5512Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17Cl2NOS2F(000) = 824
Mr = 398.37Dx = 1.397 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 10679 reflections
a = 8.0313 (2) Åθ = 2.9–27.5°
b = 9.7460 (2) ŵ = 0.57 mm1
c = 24.2623 (7) ÅT = 290 K
β = 94.0767 (12)°Irregular, colourless
V = 1894.28 (8) Å30.33 × 0.30 × 0.29 mm
Z = 4
Nonius KappaCCD diffractometer3288 independent reflections
Radiation source: sealed tube2778 reflections with I > 2σ(I)
graphiteRint = 0.049
CCD rotation images scansθmax = 25.0°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.82, Tmax = 0.85k = −11→11
12888 measured reflectionsl = −28→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0558P)2 + 0.758P] where P = (Fo2 + 2Fc2)/3
3288 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.3322 (3)0.3195 (2)0.66893 (9)0.0514 (5)
C30.4451 (2)0.2265 (2)0.70636 (9)0.0490 (5)
C40.3506 (3)0.1218 (2)0.73838 (9)0.0527 (5)
H4A0.31890.04480.71450.063*
H4B0.42230.08760.76920.063*
C50.1959 (3)0.1856 (3)0.75971 (10)0.0629 (6)
H5A0.14070.11990.78230.075*
H5B0.22640.26500.78230.075*
C60.0808 (3)0.2277 (3)0.71127 (11)0.0697 (7)
H6A0.03090.14640.69400.084*
H6B−0.00850.28350.72430.084*
C70.6208 (2)0.2649 (2)0.81264 (9)0.0520 (5)
C80.7382 (3)0.1601 (2)0.81591 (10)0.0557 (5)
H80.78410.12960.78400.067*
C90.7876 (3)0.1008 (2)0.86615 (11)0.0632 (6)
H90.86590.03030.86810.076*
C100.7204 (3)0.1464 (3)0.91293 (11)0.0678 (7)
C110.6026 (3)0.2500 (3)0.91080 (11)0.0756 (7)
H110.55720.28000.94290.091*
C120.5534 (3)0.3082 (3)0.86065 (10)0.0673 (7)
H120.47370.37760.85890.081*
C130.4783 (3)0.0506 (2)0.61552 (9)0.0572 (5)
C140.4608 (3)−0.0901 (3)0.61981 (11)0.0687 (6)
H140.5093−0.13600.65050.082*
C150.3712 (4)−0.1629 (3)0.57846 (13)0.0814 (8)
H150.3600−0.25760.58110.098*
C160.2998 (3)−0.0938 (4)0.53379 (12)0.0798 (8)
C170.3157 (4)0.0450 (4)0.52858 (12)0.0869 (9)
H170.26600.09000.49790.104*
C180.4061 (4)0.1180 (3)0.56924 (11)0.0744 (7)
H180.41880.21230.56570.089*
C190.0614 (4)0.3812 (3)0.62912 (13)0.0835 (8)
H19A0.07250.47780.63620.125*
H19B−0.05300.35450.63140.125*
H19C0.09540.36120.59280.125*
O10.3934 (2)0.40242 (17)0.63843 (7)0.0719 (5)
Cl10.78388 (14)0.07472 (10)0.97627 (4)0.1129 (3)
Cl20.19021 (13)−0.18374 (14)0.48074 (4)0.1289 (4)
S10.56494 (8)0.35278 (6)0.75025 (3)0.0615 (2)
S20.60276 (7)0.14457 (7)0.66590 (3)0.0638 (2)
N10.1666 (2)0.3052 (2)0.67012 (8)0.0589 (5)
U11U22U33U12U13U23
C20.0504 (12)0.0463 (11)0.0566 (12)−0.0034 (9)−0.0033 (9)−0.0035 (9)
C30.0412 (11)0.0466 (11)0.0588 (12)−0.0035 (8)−0.0002 (9)−0.0038 (9)
C40.0553 (12)0.0434 (11)0.0585 (13)−0.0066 (9)−0.0020 (10)−0.0008 (9)
C50.0609 (14)0.0606 (13)0.0688 (15)−0.0116 (11)0.0150 (11)−0.0024 (11)
C60.0474 (13)0.0693 (15)0.0928 (19)−0.0050 (11)0.0079 (12)−0.0031 (13)
C70.0425 (11)0.0500 (11)0.0621 (12)−0.0023 (9)−0.0056 (9)−0.0108 (10)
C80.0446 (11)0.0576 (12)0.0646 (14)0.0018 (9)0.0013 (10)−0.0100 (10)
C90.0493 (12)0.0538 (13)0.0846 (17)0.0044 (10)−0.0083 (11)−0.0089 (12)
C100.0654 (15)0.0707 (15)0.0645 (15)−0.0047 (12)−0.0161 (12)−0.0043 (12)
C110.0682 (16)0.0962 (19)0.0615 (15)0.0109 (14)−0.0027 (12)−0.0207 (14)
C120.0574 (14)0.0725 (15)0.0699 (16)0.0178 (12)−0.0097 (11)−0.0204 (12)
C130.0451 (11)0.0698 (14)0.0566 (13)0.0102 (10)0.0043 (9)−0.0087 (10)
C140.0633 (15)0.0689 (16)0.0735 (16)0.0100 (12)0.0019 (12)−0.0054 (12)
C150.0790 (19)0.0766 (17)0.090 (2)−0.0058 (14)0.0131 (15)−0.0209 (15)
C160.0612 (16)0.109 (2)0.0690 (17)−0.0075 (15)0.0079 (13)−0.0283 (16)
C170.086 (2)0.112 (2)0.0606 (16)0.0151 (17)−0.0100 (14)−0.0096 (16)
C180.0828 (18)0.0781 (17)0.0609 (15)0.0126 (14)−0.0043 (13)−0.0028 (12)
C190.0666 (17)0.0893 (19)0.0905 (19)0.0192 (14)−0.0237 (14)−0.0028 (15)
O10.0693 (11)0.0663 (10)0.0790 (11)−0.0096 (8)−0.0020 (9)0.0199 (9)
Cl10.1408 (8)0.1145 (7)0.0781 (5)0.0100 (6)−0.0305 (5)0.0123 (5)
Cl20.1044 (7)0.1885 (11)0.0944 (6)−0.0460 (7)0.0104 (5)−0.0639 (7)
S10.0640 (4)0.0479 (3)0.0702 (4)−0.0118 (2)−0.0113 (3)−0.0013 (2)
S20.0407 (3)0.0814 (4)0.0688 (4)0.0036 (3)−0.0002 (3)−0.0123 (3)
N10.0470 (10)0.0599 (11)0.0686 (12)0.0035 (8)−0.0055 (8)−0.0025 (9)
C2—O11.222 (3)C10—C111.382 (4)
C2—N11.340 (3)C10—Cl11.731 (3)
C2—C31.533 (3)C11—C121.375 (4)
C3—C41.518 (3)C11—H110.9300
C3—S21.839 (2)C12—H120.9300
C3—S11.851 (2)C13—C141.383 (4)
C4—C51.513 (3)C13—C181.391 (3)
C4—H4A0.9700C13—S21.777 (2)
C4—H4B0.9700C14—C151.388 (4)
C5—C61.500 (3)C14—H140.9300
C5—H5A0.9700C15—C161.367 (4)
C5—H5B0.9700C15—H150.9300
C6—N11.463 (3)C16—C171.366 (4)
C6—H6A0.9700C16—Cl21.743 (3)
C6—H6B0.9700C17—C181.380 (4)
C7—C121.385 (3)C17—H170.9300
C7—C81.388 (3)C18—H180.9300
C7—S11.769 (2)C19—N11.460 (3)
C8—C91.381 (3)C19—H19A0.9600
C8—H80.9300C19—H19B0.9600
C9—C101.365 (4)C19—H19C0.9600
C9—H90.9300
O1—C2—N1121.6 (2)C9—C10—Cl1119.9 (2)
O1—C2—C3120.21 (19)C11—C10—Cl1119.0 (2)
N1—C2—C3118.18 (19)C12—C11—C10119.2 (2)
C4—C3—C2113.84 (17)C12—C11—H11120.4
C4—C3—S2111.66 (14)C10—C11—H11120.4
C2—C3—S2109.95 (14)C11—C12—C7120.9 (2)
C4—C3—S1114.26 (15)C11—C12—H12119.5
C2—C3—S1102.08 (13)C7—C12—H12119.5
S2—C3—S1104.26 (10)C14—C13—C18119.3 (2)
C5—C4—C3110.55 (17)C14—C13—S2120.93 (19)
C5—C4—H4A109.5C18—C13—S2119.6 (2)
C3—C4—H4A109.5C13—C14—C15120.2 (3)
C5—C4—H4B109.5C13—C14—H14119.9
C3—C4—H4B109.5C15—C14—H14119.9
H4A—C4—H4B108.1C16—C15—C14119.2 (3)
C6—C5—C4108.67 (19)C16—C15—H15120.4
C6—C5—H5A110.0C14—C15—H15120.4
C4—C5—H5A110.0C17—C16—C15121.6 (3)
C6—C5—H5B110.0C17—C16—Cl2118.4 (3)
C4—C5—H5B110.0C15—C16—Cl2119.9 (3)
H5A—C5—H5B108.3C16—C17—C18119.5 (3)
N1—C6—C5112.44 (19)C16—C17—H17120.2
N1—C6—H6A109.1C18—C17—H17120.2
C5—C6—H6A109.1C17—C18—C13120.1 (3)
N1—C6—H6B109.1C17—C18—H18119.9
C5—C6—H6B109.1C13—C18—H18119.9
H6A—C6—H6B107.8N1—C19—H19A109.5
C12—C7—C8118.7 (2)N1—C19—H19B109.5
C12—C7—S1118.79 (17)H19A—C19—H19B109.5
C8—C7—S1122.34 (17)N1—C19—H19C109.5
C9—C8—C7120.6 (2)H19A—C19—H19C109.5
C9—C8—H8119.7H19B—C19—H19C109.5
C7—C8—H8119.7C7—S1—C3105.06 (10)
C10—C9—C8119.5 (2)C13—S2—C3102.48 (9)
C10—C9—H9120.3C2—N1—C19117.4 (2)
C8—C9—H9120.3C2—N1—C6125.80 (19)
C9—C10—C11121.1 (2)C19—N1—C6116.7 (2)
O1—C2—C3—C4−175.5 (2)C14—C15—C16—C170.6 (4)
N1—C2—C3—C43.4 (3)C14—C15—C16—Cl2178.7 (2)
O1—C2—C3—S2−49.4 (2)C15—C16—C17—C180.0 (5)
N1—C2—C3—S2129.55 (18)Cl2—C16—C17—C18−178.1 (2)
O1—C2—C3—S160.9 (2)C16—C17—C18—C13−0.9 (4)
N1—C2—C3—S1−120.22 (18)C14—C13—C18—C171.1 (4)
C2—C3—C4—C5−40.9 (2)S2—C13—C18—C17177.0 (2)
S2—C3—C4—C5−166.11 (15)C12—C7—S1—C3−113.91 (19)
S1—C3—C4—C575.9 (2)C8—C7—S1—C370.55 (19)
C3—C4—C5—C663.6 (2)C4—C3—S1—C729.71 (18)
C4—C5—C6—N1−48.4 (3)C2—C3—S1—C7153.07 (14)
C12—C7—C8—C9−0.4 (3)S2—C3—S1—C7−92.45 (12)
S1—C7—C8—C9175.18 (17)C14—C13—S2—C3−104.0 (2)
C7—C8—C9—C10−0.3 (3)C18—C13—S2—C380.2 (2)
C8—C9—C10—C110.6 (4)C4—C3—S2—C1367.21 (17)
C8—C9—C10—Cl1−178.95 (18)C2—C3—S2—C13−60.15 (16)
C9—C10—C11—C12−0.3 (4)S1—C3—S2—C13−168.93 (11)
Cl1—C10—C11—C12179.3 (2)O1—C2—N1—C196.9 (3)
C10—C11—C12—C7−0.3 (4)C3—C2—N1—C19−172.0 (2)
C8—C7—C12—C110.7 (4)O1—C2—N1—C6−168.6 (2)
S1—C7—C12—C11−175.0 (2)C3—C2—N1—C612.5 (3)
C18—C13—C14—C15−0.4 (4)C5—C6—N1—C211.0 (3)
S2—C13—C14—C15−176.2 (2)C5—C6—N1—C19−164.5 (2)
C13—C14—C15—C16−0.5 (4)
Cg1 is the centroid of the C7–C12.
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.932.323.218 (3)164
C11—H11···Cl2ii0.932.833.708 (3)157
C19—H19a···Cg1iii0.962.953.676 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C7–C12.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O1i0.932.323.218 (3)164
C11—H11⋯Cl2ii0.932.833.708 (3)157
C19—H19a⋯Cg1iii0.962.953.676 (3)133

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Methyl-3-phenyl-sulfonyl-2-piperidone.

Authors:  Julio Zukerman-Schpector; Paulo R Olivato; Carlos R Cerqueira; Elisângela Vinhato; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-16
  2 in total
  4 in total

1.  1-(4-Bromo-phen-yl)-2-ethyl-sulfinyl-2-(phenyl-selan-yl)ethanone monohydrate.

Authors:  Julio Zukerman-Schpector; Carlos A De Simone; Paulo R Olivato; Carlos R Cerqueira; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  1-Methyl-3,3-bis-[(4-methyl-phen-yl)sulfan-yl]piperidin-2-one.

Authors:  Julio Zukerman-Schpector; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

3.  1-Methyl-3,3-bis-(phenyl-sulfan-yl)piperidin-2-one.

Authors:  Ignez Caracelli; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

4.  3,3-Bis[(4-meth-oxy-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Authors:  Ignez Caracelli; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  4 in total

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