Literature DB >> 22719569

1-Methyl-3,3-bis-(phenyl-sulfan-yl)piperidin-2-one.

Ignez Caracelli, Paulo R Olivato, Carlos R Cerqueira, Jean M M Santos, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The piperidone ring in the title compound, C(18)H(19)NOS(2), is in a distorted half-chair conformation, distorted towards a twisted boat, with the central methyl-ene C atom of the propyl backbone lying 0.606 (2) Å out of the plane defined by the other five atoms (r.m.s. deviation = 0.1197 Å). One of the S-bound phenyl rings is almost perpendicular to the least-squares plane through the piperidone ring, whereas the other is splayed [dihedral angles = 75.97 (6) and 44.21 (7)°, respectively]. The most prominent feature of the crystal packing is the formation of helical supra-molecular chains along the b axis sustained by C-H⋯O inter-actions. The chains are consolidated into a three-dimensional architecture via C-H⋯π inter-actions whereby one S-bound phenyl ring accepts two C-H⋯π contacts.

Entities:  

Year:  2012        PMID: 22719569      PMCID: PMC3379371          DOI: 10.1107/S1600536812021277

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to β-thio-carbonyl compounds, see: Vinhato et al. (2011 ▶); Olivato et al. (2009 ▶). For related structures, see: Zukerman-Schpector et al. (2010 ▶, 2011 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶). For the synthesis, see: Zoretic & Soja (1976 ▶).

Experimental

Crystal data

C18H19NOS2 M = 329.48 Orthorhombic, a = 8.2103 (1) Å b = 9.8329 (1) Å c = 20.3686 (2) Å V = 1644.38 (3) Å3 Z = 4 Cu Kα radiation μ = 2.93 mm−1 T = 100 K 0.35 × 0.30 × 0.25 mm

Data collection

Agilent SuperNova Dual (Cu at zero) diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.427, T max = 0.585 4452 measured reflections 2769 independent reflections 2728 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.067 S = 1.09 2769 reflections 200 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 818 Friedel pairs Flack parameter: 0.024 (14) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and MarvinSketch (ChemAxon, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021277/hg5220sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021277/hg5220Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021277/hg5220Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H19NOS2F(000) = 696
Mr = 329.48Dx = 1.331 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 3533 reflections
a = 8.2103 (1) Åθ = 4.5–75.9°
b = 9.8329 (1) ŵ = 2.93 mm1
c = 20.3686 (2) ÅT = 100 K
V = 1644.38 (3) Å3Prism, colourless
Z = 40.35 × 0.30 × 0.25 mm
Agilent SuperNova Dual (Cu at zero) diffractometer with an Atlas detector2769 independent reflections
Radiation source: fine-focus sealed tube2728 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
Detector resolution: 10.4041 pixels mm-1θmax = 76.2°, θmin = 5.0°
ω scansh = −8→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→12
Tmin = 0.427, Tmax = 0.585l = −25→24
4452 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0401P)2 + 0.3751P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2769 reflectionsΔρmax = 0.19 e Å3
200 parametersΔρmin = −0.32 e Å3
0 restraintsAbsolute structure: Flack (1983), 818 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.024 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.30204 (5)1.02555 (4)0.75801 (2)0.01619 (10)
S20.35543 (5)0.81897 (4)0.65673 (2)0.01664 (10)
N1−0.07129 (19)0.98484 (16)0.66379 (7)0.0177 (3)
O10.15902 (17)1.07356 (13)0.62189 (6)0.0212 (3)
C10.0918 (2)0.99466 (17)0.66038 (8)0.0152 (3)
C20.1941 (2)0.90147 (17)0.70511 (8)0.0134 (3)
C30.0940 (2)0.79738 (17)0.74265 (8)0.0146 (3)
H3A0.06520.72100.71320.018*
H3B0.15930.76060.77940.018*
C4−0.0604 (2)0.86200 (18)0.76924 (9)0.0180 (4)
H4A−0.12050.79550.79650.022*
H4B−0.03250.94120.79700.022*
C5−0.1651 (2)0.9070 (2)0.71229 (9)0.0216 (4)
H5A−0.21300.82600.69080.026*
H5B−0.25570.96390.72890.026*
C6−0.1655 (3)1.0590 (2)0.61425 (9)0.0253 (4)
H6A−0.13071.03060.57030.038*
H6B−0.14701.15690.61940.038*
H6C−0.28161.03920.61990.038*
C70.3549 (2)0.93152 (17)0.82931 (8)0.0142 (3)
C80.2861 (2)0.96954 (18)0.88918 (8)0.0188 (3)
H80.20521.03850.89060.023*
C90.3364 (3)0.90622 (19)0.94685 (8)0.0216 (4)
H90.29060.93280.98770.026*
C100.4531 (2)0.80460 (19)0.94479 (9)0.0203 (4)
H100.48800.76260.98440.024*
C110.5195 (2)0.76355 (18)0.88520 (9)0.0197 (4)
H110.59750.69230.88390.024*
C120.4711 (2)0.82740 (18)0.82761 (8)0.0159 (3)
H120.51700.80030.78680.019*
C130.2397 (2)0.71592 (18)0.60188 (8)0.0152 (3)
C140.2444 (2)0.57523 (19)0.60717 (8)0.0184 (4)
H140.30470.53380.64160.022*
C150.1608 (2)0.49458 (19)0.56209 (9)0.0220 (4)
H150.16530.39830.56550.026*
C160.0713 (2)0.5546 (2)0.51225 (9)0.0221 (4)
H160.01310.49980.48180.027*
C170.0671 (3)0.6953 (2)0.50700 (9)0.0261 (4)
H170.00590.73660.47280.031*
C180.1512 (3)0.77555 (19)0.55114 (8)0.0224 (4)
H180.14860.87170.54690.027*
U11U22U33U12U13U23
S10.0193 (2)0.01418 (17)0.01510 (18)−0.00298 (17)−0.00493 (16)0.00065 (14)
S20.01155 (18)0.0246 (2)0.01375 (18)−0.00025 (17)−0.00070 (15)−0.00305 (16)
N10.0151 (7)0.0212 (7)0.0167 (6)0.0036 (6)−0.0037 (6)0.0015 (6)
O10.0241 (7)0.0212 (6)0.0182 (6)−0.0059 (6)−0.0033 (5)0.0061 (5)
C10.0182 (8)0.0152 (8)0.0122 (7)−0.0006 (7)−0.0022 (6)−0.0011 (7)
C20.0126 (7)0.0160 (7)0.0116 (7)−0.0014 (7)−0.0022 (6)0.0003 (6)
C30.0162 (8)0.0145 (7)0.0132 (7)−0.0018 (7)−0.0004 (6)0.0001 (7)
C40.0171 (9)0.0199 (8)0.0171 (8)−0.0015 (7)0.0029 (7)−0.0002 (7)
C50.0135 (8)0.0262 (9)0.0252 (9)−0.0001 (8)0.0015 (8)−0.0002 (7)
C60.0243 (10)0.0303 (9)0.0213 (8)0.0088 (9)−0.0098 (8)−0.0003 (8)
C70.0127 (7)0.0163 (7)0.0135 (7)−0.0029 (7)−0.0037 (7)−0.0017 (6)
C80.0199 (9)0.0186 (8)0.0180 (8)0.0014 (8)−0.0014 (7)−0.0038 (7)
C90.0284 (10)0.0242 (9)0.0123 (7)−0.0039 (8)−0.0003 (7)−0.0025 (7)
C100.0236 (9)0.0200 (8)0.0173 (8)−0.0066 (8)−0.0079 (7)0.0022 (7)
C110.0151 (8)0.0170 (8)0.0270 (9)−0.0019 (7)−0.0062 (8)0.0011 (7)
C120.0123 (8)0.0183 (8)0.0172 (8)−0.0015 (7)0.0000 (6)−0.0031 (7)
C130.0117 (8)0.0229 (8)0.0109 (7)0.0010 (7)0.0006 (6)−0.0026 (6)
C140.0164 (8)0.0235 (8)0.0154 (7)0.0058 (8)0.0007 (7)−0.0013 (7)
C150.0226 (9)0.0221 (9)0.0213 (8)0.0008 (8)0.0015 (8)−0.0053 (7)
C160.0176 (8)0.0317 (10)0.0170 (8)−0.0014 (8)0.0006 (7)−0.0088 (7)
C170.0266 (10)0.0351 (10)0.0167 (8)0.0049 (9)−0.0100 (8)−0.0018 (8)
C180.0293 (10)0.0223 (8)0.0157 (8)0.0014 (8)−0.0045 (8)0.0006 (7)
S1—C71.7755 (17)C7—C121.400 (3)
S1—C21.8535 (17)C8—C91.392 (2)
S2—C131.7826 (17)C8—H80.9500
S2—C21.8396 (18)C9—C101.385 (3)
N1—C11.344 (2)C9—H90.9500
N1—C61.466 (2)C10—C111.390 (3)
N1—C51.468 (2)C10—H100.9500
O1—C11.233 (2)C11—C121.389 (2)
C1—C21.541 (2)C11—H110.9500
C2—C31.519 (2)C12—H120.9500
C3—C41.518 (2)C13—C141.388 (3)
C3—H3A0.9900C13—C181.393 (2)
C3—H3B0.9900C14—C151.394 (3)
C4—C51.511 (3)C14—H140.9500
C4—H4A0.9900C15—C161.385 (3)
C4—H4B0.9900C15—H150.9500
C5—H5A0.9900C16—C171.388 (3)
C5—H5B0.9900C16—H160.9500
C6—H6A0.9800C17—C181.381 (3)
C6—H6B0.9800C17—H170.9500
C6—H6C0.9800C18—H180.9500
C7—C81.395 (2)
C7—S1—C2104.46 (7)H6B—C6—H6C109.5
C13—S2—C2101.69 (8)C8—C7—C12119.57 (16)
C1—N1—C6117.01 (16)C8—C7—S1118.46 (13)
C1—N1—C5126.51 (15)C12—C7—S1121.82 (13)
C6—N1—C5116.48 (15)C9—C8—C7119.86 (17)
O1—C1—N1121.59 (16)C9—C8—H8120.1
O1—C1—C2120.39 (16)C7—C8—H8120.1
N1—C1—C2118.00 (15)C10—C9—C8120.14 (17)
C3—C2—C1113.80 (14)C10—C9—H9119.9
C3—C2—S2111.23 (11)C8—C9—H9119.9
C1—C2—S2109.75 (11)C9—C10—C11120.47 (17)
C3—C2—S1114.18 (11)C9—C10—H10119.8
C1—C2—S1102.29 (11)C11—C10—H10119.8
S2—C2—S1104.91 (9)C12—C11—C10119.60 (17)
C4—C3—C2110.44 (14)C12—C11—H11120.2
C4—C3—H3A109.6C10—C11—H11120.2
C2—C3—H3A109.6C11—C12—C7120.32 (16)
C4—C3—H3B109.6C11—C12—H12119.8
C2—C3—H3B109.6C7—C12—H12119.8
H3A—C3—H3B108.1C14—C13—C18119.44 (16)
C5—C4—C3108.91 (14)C14—C13—S2120.21 (14)
C5—C4—H4A109.9C18—C13—S2120.25 (14)
C3—C4—H4A109.9C13—C14—C15120.15 (17)
C5—C4—H4B109.9C13—C14—H14119.9
C3—C4—H4B109.9C15—C14—H14119.9
H4A—C4—H4B108.3C16—C15—C14120.10 (18)
N1—C5—C4111.75 (15)C16—C15—H15120.0
N1—C5—H5A109.3C14—C15—H15120.0
C4—C5—H5A109.3C15—C16—C17119.63 (18)
N1—C5—H5B109.3C15—C16—H16120.2
C4—C5—H5B109.3C17—C16—H16120.2
H5A—C5—H5B107.9C18—C17—C16120.46 (19)
N1—C6—H6A109.5C18—C17—H17119.8
N1—C6—H6B109.5C16—C17—H17119.8
H6A—C6—H6B109.5C17—C18—C13120.21 (18)
N1—C6—H6C109.5C17—C18—H18119.9
H6A—C6—H6C109.5C13—C18—H18119.9
C6—N1—C1—O17.5 (3)C3—C4—C5—N1−48.7 (2)
C5—N1—C1—O1−172.54 (16)C2—S1—C7—C8−115.91 (15)
C6—N1—C1—C2−171.12 (14)C2—S1—C7—C1268.49 (16)
C5—N1—C1—C28.9 (3)C12—C7—C8—C91.6 (3)
O1—C1—C2—C3−172.11 (15)S1—C7—C8—C9−174.07 (15)
N1—C1—C2—C36.5 (2)C7—C8—C9—C10−0.7 (3)
O1—C1—C2—S2−46.74 (18)C8—C9—C10—C11−0.9 (3)
N1—C1—C2—S2131.88 (15)C9—C10—C11—C121.6 (3)
O1—C1—C2—S164.23 (17)C10—C11—C12—C7−0.6 (3)
N1—C1—C2—S1−117.15 (15)C8—C7—C12—C11−1.0 (3)
C13—S2—C2—C361.95 (12)S1—C7—C12—C11174.61 (13)
C13—S2—C2—C1−64.87 (12)C2—S2—C13—C14−111.92 (15)
C13—S2—C2—S1−174.12 (8)C2—S2—C13—C1871.68 (16)
C7—S1—C2—C333.97 (14)C18—C13—C14—C15−0.1 (3)
C7—S1—C2—C1157.38 (11)S2—C13—C14—C15−176.56 (14)
C7—S1—C2—S2−88.05 (9)C13—C14—C15—C16−0.7 (3)
C1—C2—C3—C4−42.33 (18)C14—C15—C16—C170.8 (3)
S2—C2—C3—C4−166.90 (11)C15—C16—C17—C18−0.1 (3)
S1—C2—C3—C474.61 (16)C16—C17—C18—C13−0.7 (3)
C2—C3—C4—C563.97 (18)C14—C13—C18—C170.8 (3)
C1—N1—C5—C413.1 (3)S2—C13—C18—C17177.28 (16)
C6—N1—C5—C4−166.90 (15)
D—H···AD—HH···AD···AD—H···A
C11—H11···O1i0.952.323.237 (3)163
C6—H6b···Cg1ii0.982.953.606 (2)125
C14—H14···Cg1iii0.952.963.544 (2)121
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C7–C12 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯O1i0.952.323.237 (3)163
C6—H6b⋯Cg1ii0.982.953.606 (2)125
C14—H14⋯Cg1iii0.952.963.544 (2)121

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,3-Bis[(4-chloro-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Authors:  Julio Zukerman-Schpector; Carlos A De Simone; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-30

3.  1-Methyl-3,3-bis-[(4-methyl-phen-yl)sulfan-yl]piperidin-2-one.

Authors:  Julio Zukerman-Schpector; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  3 in total
  1 in total

1.  3,3-Bis[(4-meth-oxy-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Authors:  Ignez Caracelli; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  1 in total

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