Literature DB >> 22798758

3,3-Bis[(4-meth-oxy-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Ignez Caracelli, Paulo R Olivato, Carlos R Cerqueira, Jean M M Santos, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The piperidone ring in the title compound, C(20)H(23)NO(3)S(2), has a distorted half-chair conformation with the central methyl-ene atom of the propyl fragment lying 0.696 (1) Å out of the plane defined by the other five atoms (r.m.s. deviation = 0.071 Å). One of the S-bound phenyl rings is almost perpendicular to the mean plane through the piperidone ring, whereas the other is splayed [dihedral angles = 71.95 (6) and 38.42 (6)°]. In the crystal, C-H⋯O and C-H⋯π inter-actions lead to the formation of supra-molecular layers in the ab plane.

Entities:  

Year:  2012        PMID: 22798758      PMCID: PMC3393893          DOI: 10.1107/S1600536812025202

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to β-thio­carbonyl compounds, see: Vinhato et al. (2011 ▶); Olivato et al. (2009 ▶). For related structures, see: Caracelli et al. (2012 ▶); Zukerman-Schpector et al. (2010 ▶, 2011 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶). For the synthesis, see: Hashmat & McDermott, (2002 ▶); Zoretic & Soja (1976 ▶).

Experimental

Crystal data

C20H23NO3S2 M = 389.53 Monoclinic, a = 8.5802 (1) Å b = 9.4744 (1) Å c = 23.3732 (2) Å β = 91.018 (1)° V = 1899.76 (3) Å3 Z = 4 Cu Kα radiation μ = 2.70 mm−1 T = 100 K 0.30 × 0.25 × 0.20 mm

Data collection

Agilent SuperNova Dual (Cu at zero) Atlas detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.498, T max = 0.614 7011 measured reflections 3763 independent reflections 3484 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.06 3763 reflections 238 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and MarvinSketch (Chemaxon, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025202/su2445sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025202/su2445Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025202/su2445Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H23NO3S2F(000) = 824
Mr = 389.53Dx = 1.362 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 4644 reflections
a = 8.5802 (1) Åθ = 3.8–74.3°
b = 9.4744 (1) ŵ = 2.70 mm1
c = 23.3732 (2) ÅT = 100 K
β = 91.018 (1)°Prism, colourless
V = 1899.76 (3) Å30.30 × 0.25 × 0.20 mm
Z = 4
Agilent SuperNova Dual (Cu at zero) Atlas detector diffractometer3763 independent reflections
Radiation source: fine-focus sealed tube3484 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
Detector resolution: 10.4041 pixels mm-1θmax = 74.5°, θmin = 3.8°
ω scansh = −9→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −7→11
Tmin = 0.498, Tmax = 0.614l = −28→28
7011 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0385P)2 + 0.7353P] where P = (Fo2 + 2Fc2)/3
3763 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. Spectroscopic data for compound (I):IR (cm-1): ν(C=O) 1662. NMR (CDCl3, p.p.m.): δ 1.86–1.90 (2H, multiplet), 1.93–1.95 (2H, multiplet), 2.89 (3H, singlet), 3.12–3.14 (2H, triplet, J = 6.0 Hz), 3.82 (6H, singlet) 6.84–6.87 (4H, multiplet, Aryl-H), 7.53–7.55 (4H, multiplet, Aryl-H).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.65880 (15)0.88587 (14)0.83750 (5)0.0156 (3)
C20.55775 (15)0.79082 (13)0.79859 (5)0.0149 (3)
C30.64992 (16)0.68485 (14)0.76382 (6)0.0171 (3)
H3A0.67830.60300.78820.021*
H3B0.58460.65030.73140.021*
C40.79668 (16)0.75248 (15)0.74115 (6)0.0201 (3)
H4A0.85190.68500.71630.024*
H4B0.76930.83680.71810.024*
C50.90077 (17)0.79433 (16)0.79111 (6)0.0234 (3)
H5A0.94560.70840.80900.028*
H5B0.98800.85260.77710.028*
C60.90807 (18)0.95375 (17)0.87618 (7)0.0280 (3)
H6A0.88350.92150.91480.042*
H6B0.88411.05450.87260.042*
H6C1.01910.93850.86920.042*
C70.39879 (16)0.82787 (14)0.69129 (5)0.0164 (3)
C80.48089 (16)0.85797 (15)0.64178 (6)0.0197 (3)
H80.56230.92590.64290.024*
C90.44427 (17)0.78940 (15)0.59104 (6)0.0205 (3)
H90.50070.81030.55750.025*
C100.32476 (16)0.68970 (14)0.58905 (5)0.0166 (3)
C110.24152 (15)0.65820 (14)0.63809 (6)0.0161 (3)
H110.16020.59020.63690.019*
C120.27956 (15)0.72801 (14)0.68886 (6)0.0169 (3)
H120.22320.70720.72250.020*
C130.52232 (15)0.59131 (14)0.88711 (6)0.0167 (3)
C140.52403 (16)0.44562 (15)0.87749 (6)0.0192 (3)
H140.47020.40780.84510.023*
C150.60328 (16)0.35581 (15)0.91466 (6)0.0208 (3)
H150.60350.25700.90780.025*
C160.68264 (15)0.41136 (15)0.96214 (6)0.0181 (3)
C170.68445 (16)0.55632 (15)0.97184 (6)0.0185 (3)
H170.74090.59421.00360.022*
C180.60273 (16)0.64528 (15)0.93459 (6)0.0184 (3)
H180.60180.74400.94160.022*
C190.18049 (18)0.52401 (17)0.53274 (6)0.0269 (3)
H19A0.17660.48580.49380.040*
H19B0.08030.56810.54140.040*
H19C0.20150.44750.56000.040*
C200.84281 (17)0.36600 (17)1.04494 (6)0.0247 (3)
H20A0.88420.28631.06720.037*
H20B0.77590.42371.06920.037*
H20C0.92940.42361.03120.037*
N0.81502 (13)0.87439 (12)0.83427 (5)0.0190 (2)
O10.59763 (11)0.96898 (10)0.87087 (4)0.0203 (2)
O20.30155 (12)0.62711 (11)0.53720 (4)0.0226 (2)
O30.75382 (12)0.31405 (11)0.99716 (4)0.0225 (2)
S10.44547 (4)0.92077 (3)0.755059 (13)0.01775 (9)
S20.40881 (4)0.70322 (4)0.841568 (14)0.01771 (9)
U11U22U33U12U13U23
C10.0190 (6)0.0141 (6)0.0138 (6)−0.0017 (5)0.0000 (5)0.0019 (5)
C20.0174 (6)0.0146 (6)0.0127 (6)−0.0002 (5)0.0004 (5)0.0012 (5)
C30.0229 (7)0.0139 (6)0.0146 (6)0.0017 (5)0.0006 (5)−0.0001 (5)
C40.0243 (7)0.0181 (7)0.0181 (7)0.0040 (6)0.0066 (5)0.0011 (5)
C50.0194 (7)0.0217 (7)0.0292 (8)0.0019 (6)0.0043 (6)−0.0015 (6)
C60.0228 (7)0.0278 (8)0.0330 (8)−0.0062 (6)−0.0067 (6)−0.0042 (7)
C70.0195 (6)0.0153 (6)0.0142 (6)0.0019 (5)−0.0028 (5)0.0010 (5)
C80.0218 (7)0.0185 (7)0.0188 (7)−0.0047 (5)−0.0028 (5)0.0046 (5)
C90.0229 (7)0.0249 (7)0.0136 (6)−0.0032 (6)0.0013 (5)0.0053 (5)
C100.0189 (6)0.0169 (6)0.0139 (6)0.0023 (5)−0.0025 (5)0.0014 (5)
C110.0148 (6)0.0164 (6)0.0170 (6)0.0006 (5)−0.0014 (5)0.0018 (5)
C120.0164 (6)0.0192 (7)0.0151 (6)0.0022 (5)0.0013 (5)0.0023 (5)
C130.0170 (6)0.0192 (6)0.0141 (6)−0.0030 (5)0.0028 (5)0.0022 (5)
C140.0214 (7)0.0215 (7)0.0149 (6)−0.0061 (6)0.0018 (5)−0.0002 (5)
C150.0236 (7)0.0176 (7)0.0213 (7)−0.0041 (5)0.0051 (5)0.0002 (5)
C160.0162 (6)0.0218 (7)0.0165 (6)−0.0004 (5)0.0044 (5)0.0048 (5)
C170.0198 (6)0.0221 (7)0.0136 (6)−0.0032 (5)0.0013 (5)−0.0002 (5)
C180.0216 (7)0.0180 (7)0.0157 (6)−0.0024 (5)0.0029 (5)−0.0007 (5)
C190.0302 (8)0.0282 (8)0.0223 (7)−0.0073 (7)−0.0015 (6)−0.0068 (6)
C200.0228 (7)0.0324 (8)0.0187 (7)−0.0002 (6)0.0004 (5)0.0074 (6)
N0.0175 (6)0.0182 (6)0.0212 (6)−0.0028 (5)−0.0003 (4)−0.0020 (5)
O10.0235 (5)0.0196 (5)0.0178 (5)0.0006 (4)−0.0007 (4)−0.0053 (4)
O20.0264 (5)0.0271 (5)0.0143 (5)−0.0055 (4)−0.0002 (4)−0.0029 (4)
O30.0241 (5)0.0221 (5)0.0213 (5)0.0003 (4)−0.0003 (4)0.0063 (4)
S10.02349 (18)0.01403 (16)0.01560 (16)0.00191 (12)−0.00321 (12)−0.00080 (11)
S20.01626 (16)0.02082 (17)0.01604 (16)−0.00271 (12)0.00022 (12)0.00262 (12)
C1—O11.2323 (16)C10—O21.3607 (16)
C1—N1.3483 (17)C10—C111.3936 (18)
C1—C21.5368 (18)C11—C121.3922 (18)
C2—C31.5220 (18)C11—H110.9500
C2—S21.8376 (13)C12—H120.9500
C2—S11.8558 (13)C13—C181.3935 (18)
C3—C41.5168 (19)C13—C141.3986 (19)
C3—H3A0.9900C13—S21.7801 (14)
C3—H3B0.9900C14—C151.386 (2)
C4—C51.510 (2)C14—H140.9500
C4—H4A0.9900C15—C161.395 (2)
C4—H4B0.9900C15—H150.9500
C5—N1.4700 (18)C16—O31.3694 (16)
C5—H5A0.9900C16—C171.392 (2)
C5—H5B0.9900C17—C181.3923 (19)
C6—N1.4610 (18)C17—H170.9500
C6—H6A0.9800C18—H180.9500
C6—H6B0.9800C19—O21.4283 (18)
C6—H6C0.9800C19—H19A0.9800
C7—C121.3939 (19)C19—H19B0.9800
C7—C81.3947 (19)C19—H19C0.9800
C7—S11.7708 (13)C20—O31.4290 (17)
C8—C91.3835 (19)C20—H20A0.9800
C8—H80.9500C20—H20B0.9800
C9—C101.394 (2)C20—H20C0.9800
C9—H90.9500
O1—C1—N121.47 (12)C11—C10—C9120.33 (12)
O1—C1—C2120.46 (12)C12—C11—C10118.92 (12)
N—C1—C2118.07 (11)C12—C11—H11120.5
C3—C2—C1114.17 (11)C10—C11—H11120.5
C3—C2—S2111.53 (9)C11—C12—C7121.19 (12)
C1—C2—S2109.37 (9)C11—C12—H12119.4
C3—C2—S1114.48 (9)C7—C12—H12119.4
C1—C2—S1102.57 (8)C18—C13—C14118.93 (13)
S2—C2—S1103.89 (7)C18—C13—S2121.03 (11)
C4—C3—C2110.50 (11)C14—C13—S2119.92 (11)
C4—C3—H3A109.5C15—C14—C13120.77 (13)
C2—C3—H3A109.5C15—C14—H14119.6
C4—C3—H3B109.5C13—C14—H14119.6
C2—C3—H3B109.5C14—C15—C16119.63 (13)
H3A—C3—H3B108.1C14—C15—H15120.2
C5—C4—C3108.91 (11)C16—C15—H15120.2
C5—C4—H4A109.9O3—C16—C17124.28 (13)
C3—C4—H4A109.9O3—C16—C15115.33 (12)
C5—C4—H4B109.9C17—C16—C15120.38 (13)
C3—C4—H4B109.9C16—C17—C18119.43 (13)
H4A—C4—H4B108.3C16—C17—H17120.3
N—C5—C4111.70 (11)C18—C17—H17120.3
N—C5—H5A109.3C17—C18—C13120.84 (13)
C4—C5—H5A109.3C17—C18—H18119.6
N—C5—H5B109.3C13—C18—H18119.6
C4—C5—H5B109.3O2—C19—H19A109.5
H5A—C5—H5B107.9O2—C19—H19B109.5
N—C6—H6A109.5H19A—C19—H19B109.5
N—C6—H6B109.5O2—C19—H19C109.5
H6A—C6—H6B109.5H19A—C19—H19C109.5
N—C6—H6C109.5H19B—C19—H19C109.5
H6A—C6—H6C109.5O3—C20—H20A109.5
H6B—C6—H6C109.5O3—C20—H20B109.5
C12—C7—C8119.09 (12)H20A—C20—H20B109.5
C12—C7—S1121.77 (10)O3—C20—H20C109.5
C8—C7—S1119.12 (10)H20A—C20—H20C109.5
C9—C8—C7120.31 (13)H20B—C20—H20C109.5
C9—C8—H8119.8C1—N—C6116.94 (12)
C7—C8—H8119.8C1—N—C5126.17 (12)
C8—C9—C10120.16 (13)C6—N—C5116.84 (12)
C8—C9—H9119.9C10—O2—C19117.24 (11)
C10—C9—H9119.9C16—O3—C20117.50 (11)
O2—C10—C11124.76 (12)C7—S1—C2103.84 (6)
O2—C10—C9114.89 (12)C13—S2—C2102.56 (6)
O1—C1—C2—C3−174.73 (12)O3—C16—C17—C18−177.42 (12)
N—C1—C2—C34.69 (17)C15—C16—C17—C181.8 (2)
O1—C1—C2—S2−48.98 (15)C16—C17—C18—C13−1.5 (2)
N—C1—C2—S2130.43 (11)C14—C13—C18—C170.4 (2)
O1—C1—C2—S160.84 (14)S2—C13—C18—C17176.48 (10)
N—C1—C2—S1−119.75 (11)O1—C1—N—C66.26 (19)
C1—C2—C3—C4−40.74 (15)C2—C1—N—C6−173.14 (12)
S2—C2—C3—C4−165.34 (9)O1—C1—N—C5−171.00 (13)
S1—C2—C3—C477.07 (12)C2—C1—N—C59.59 (19)
C2—C3—C4—C563.62 (14)C4—C5—N—C113.72 (19)
C3—C4—C5—N−49.55 (15)C4—C5—N—C6−163.55 (12)
C12—C7—C8—C90.0 (2)C11—C10—O2—C191.48 (19)
S1—C7—C8—C9−178.44 (11)C9—C10—O2—C19179.98 (13)
C7—C8—C9—C100.1 (2)C17—C16—O3—C20−3.66 (19)
C8—C9—C10—O2−178.68 (12)C15—C16—O3—C20177.13 (12)
C8—C9—C10—C11−0.1 (2)C12—C7—S1—C277.37 (12)
O2—C10—C11—C12178.54 (12)C8—C7—S1—C2−104.27 (11)
C9—C10—C11—C120.1 (2)C3—C2—S1—C730.09 (11)
C10—C11—C12—C7−0.1 (2)C1—C2—S1—C7154.33 (8)
C8—C7—C12—C110.1 (2)S2—C2—S1—C7−91.77 (7)
S1—C7—C12—C11178.42 (10)C18—C13—S2—C277.44 (12)
C18—C13—C14—C150.5 (2)C14—C13—S2—C2−106.48 (11)
S2—C13—C14—C15−175.69 (10)C3—C2—S2—C1361.21 (10)
C13—C14—C15—C16−0.2 (2)C1—C2—S2—C13−66.04 (10)
C14—C15—C16—O3178.31 (12)S1—C2—S2—C13−174.98 (6)
C14—C15—C16—C17−0.9 (2)
D—H···AD—HH···AD···AD—H···A
C11—H11···O1i0.952.503.4211 (16)165
C9—H9···O3ii0.952.483.3473 (17)151
C6—H6b···Cg1ii0.982.933.5232 (17)120
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C7–C12 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C11—H11⋯O1i 0.952.503.4211 (16)165
C9—H9⋯O3ii 0.952.483.3473 (17)151
C6—H6b⋯Cg1ii 0.982.933.5232 (17)120

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,3-Bis[(4-chloro-phen-yl)sulfan-yl]-1-methyl-piperidin-2-one.

Authors:  Julio Zukerman-Schpector; Carlos A De Simone; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-30

3.  1-Methyl-3,3-bis-[(4-methyl-phen-yl)sulfan-yl]piperidin-2-one.

Authors:  Julio Zukerman-Schpector; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

4.  1-Methyl-3,3-bis-(phenyl-sulfan-yl)piperidin-2-one.

Authors:  Ignez Caracelli; Paulo R Olivato; Carlos R Cerqueira; Jean M M Santos; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  4 in total

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