| Literature DB >> 21583894 |
Shivanagere Nagojappa Narendra Babu, Aisyah Saad Abdul Rahim, Shafida Abd Hamid, Ching Kheng Quah, Hoong-Kun Fun.
Abstract
In the title compound, C(9)H(10)N(2)O(4), an intra-molecular N-H⋯O hydrogen-bond inter-action generates an S(6) ring motif. The nitro group is slightly twisted away from its attached benzene ring [dihedral angle = 15.29 (15)°]. In the crystal structure, mol-ecules are stacked down the a axis caused by short O⋯O(-1-x, -y, 2-z) contacts of 2.6481 (16) Å involving the O atoms of the nitro groups. The crystal packing is consolidated by inter-molecular O-H⋯O hydrogen bonds, linking the mol-ecules into centrosymmetric dimers.Entities:
Year: 2009 PMID: 21583894 PMCID: PMC2977758 DOI: 10.1107/S1600536809014196
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10N2O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3018 reflections | |
| θ = 1.5–29.0° | |
| µ = 0.12 mm−1 | |
| α = 89.256 (5)° | |
| β = 84.730 (4)° | Needle, yellow |
| γ = 82.304 (4)° | 0.45 × 0.05 × 0.03 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 2410 independent reflections |
| Radiation source: fine-focus sealed tube | 1903 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 7604 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2410 reflections | (Δ/σ)max < 0.001 |
| 142 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat [Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107] operating at 120.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.2816 (3) | 0.09151 (12) | 0.95790 (7) | 0.0267 (3) | |
| O2 | 0.0296 (3) | 0.28327 (12) | 0.93767 (7) | 0.0260 (3) | |
| O3 | 0.3986 (3) | 0.31078 (13) | 0.49289 (7) | 0.0302 (3) | |
| O4 | 0.3740 (3) | 0.47173 (12) | 0.62170 (8) | 0.0272 (3) | |
| H1O4 | 0.4493 | 0.5304 | 0.5797 | 0.041* | |
| N1 | −0.0961 (3) | 0.17166 (13) | 0.90601 (8) | 0.0175 (2) | |
| N2 | −0.2305 (3) | −0.12944 (13) | 0.82002 (8) | 0.0174 (2) | |
| C1 | 0.1130 (3) | 0.24569 (15) | 0.74460 (9) | 0.0164 (3) | |
| H1A | 0.1501 | 0.3413 | 0.7714 | 0.020* | |
| C2 | −0.0252 (3) | 0.13158 (15) | 0.80371 (9) | 0.0155 (3) | |
| C3 | −0.0921 (3) | −0.01649 (14) | 0.76646 (9) | 0.0152 (3) | |
| C4 | 0.0068 (3) | −0.04224 (15) | 0.66528 (9) | 0.0179 (3) | |
| H4A | −0.0235 | −0.1381 | 0.6374 | 0.021* | |
| C5 | 0.1453 (4) | 0.07084 (16) | 0.60827 (9) | 0.0186 (3) | |
| H5A | 0.2077 | 0.0496 | 0.5427 | 0.022* | |
| C6 | 0.1956 (3) | 0.21795 (15) | 0.64634 (9) | 0.0175 (3) | |
| C7 | 0.3311 (4) | 0.34040 (16) | 0.58304 (10) | 0.0194 (3) | |
| C8 | −0.2853 (4) | −0.28286 (15) | 0.78103 (10) | 0.0177 (3) | |
| H8A | −0.0688 | −0.3375 | 0.7516 | 0.021* | |
| H8B | −0.4447 | −0.2657 | 0.7312 | 0.021* | |
| C9 | −0.4293 (4) | −0.38448 (16) | 0.86180 (10) | 0.0206 (3) | |
| H9A | −0.4684 | −0.4841 | 0.8355 | 0.031* | |
| H9B | −0.6428 | −0.3299 | 0.8910 | 0.031* | |
| H9C | −0.2680 | −0.4038 | 0.9101 | 0.031* | |
| H1N2 | −0.299 (5) | −0.109 (2) | 0.8778 (14) | 0.030 (5)* |
| O1 | 0.0407 (6) | 0.0221 (5) | 0.0181 (5) | −0.0142 (4) | 0.0083 (4) | −0.0012 (4) |
| O2 | 0.0395 (6) | 0.0233 (5) | 0.0178 (5) | −0.0145 (4) | −0.0011 (4) | −0.0033 (4) |
| O3 | 0.0478 (7) | 0.0288 (6) | 0.0155 (5) | −0.0165 (5) | 0.0056 (4) | 0.0006 (4) |
| O4 | 0.0415 (7) | 0.0199 (5) | 0.0215 (5) | −0.0142 (4) | 0.0048 (4) | 0.0009 (4) |
| N1 | 0.0222 (6) | 0.0146 (5) | 0.0155 (5) | −0.0032 (4) | −0.0002 (4) | 0.0006 (4) |
| N2 | 0.0236 (6) | 0.0144 (5) | 0.0147 (5) | −0.0057 (4) | 0.0004 (4) | 0.0001 (4) |
| C1 | 0.0179 (6) | 0.0142 (6) | 0.0176 (6) | −0.0044 (5) | −0.0013 (5) | 0.0004 (5) |
| C2 | 0.0181 (6) | 0.0151 (6) | 0.0133 (6) | −0.0025 (5) | −0.0007 (5) | 0.0002 (4) |
| C3 | 0.0150 (6) | 0.0142 (6) | 0.0165 (6) | −0.0018 (5) | −0.0023 (5) | 0.0011 (5) |
| C4 | 0.0215 (7) | 0.0165 (6) | 0.0162 (6) | −0.0047 (5) | −0.0016 (5) | −0.0022 (5) |
| C5 | 0.0215 (7) | 0.0204 (6) | 0.0143 (6) | −0.0056 (5) | 0.0007 (5) | −0.0008 (5) |
| C6 | 0.0196 (7) | 0.0166 (6) | 0.0166 (6) | −0.0050 (5) | 0.0002 (5) | 0.0014 (5) |
| C7 | 0.0232 (7) | 0.0192 (6) | 0.0166 (6) | −0.0070 (5) | 0.0007 (5) | 0.0013 (5) |
| C8 | 0.0211 (7) | 0.0147 (6) | 0.0179 (6) | −0.0051 (5) | −0.0016 (5) | −0.0010 (5) |
| C9 | 0.0246 (7) | 0.0164 (6) | 0.0218 (7) | −0.0071 (5) | −0.0016 (5) | 0.0007 (5) |
| O1—N1 | 1.2375 (14) | C3—C4 | 1.4273 (18) |
| O2—N1 | 1.2273 (14) | C4—C5 | 1.3700 (18) |
| O3—C7 | 1.2700 (17) | C4—H4A | 0.9300 |
| O4—C7 | 1.2784 (16) | C5—C6 | 1.4043 (18) |
| O4—H1O4 | 0.8200 | C5—H5A | 0.9300 |
| N1—C2 | 1.4506 (16) | C6—C7 | 1.4711 (18) |
| N2—C3 | 1.3441 (16) | C8—C9 | 1.5155 (18) |
| N2—C8 | 1.4634 (16) | C8—H8A | 0.9700 |
| N2—H1N2 | 0.832 (19) | C8—H8B | 0.9700 |
| C1—C6 | 1.3818 (18) | C9—H9A | 0.9600 |
| C1—C2 | 1.3914 (17) | C9—H9B | 0.9600 |
| C1—H1A | 0.9300 | C9—H9C | 0.9600 |
| C2—C3 | 1.4278 (17) | ||
| C7—O4—H1O4 | 109.5 | C4—C5—H5A | 119.2 |
| O2—N1—O1 | 122.64 (11) | C6—C5—H5A | 119.2 |
| O2—N1—C2 | 118.90 (11) | C1—C6—C5 | 118.53 (12) |
| O1—N1—C2 | 118.46 (10) | C1—C6—C7 | 120.64 (12) |
| C3—N2—C8 | 123.74 (11) | C5—C6—C7 | 120.83 (12) |
| C3—N2—H1N2 | 117.9 (13) | O3—C7—O4 | 123.29 (12) |
| C8—N2—H1N2 | 118.3 (13) | O3—C7—C6 | 118.53 (12) |
| C6—C1—C2 | 120.49 (12) | O4—C7—C6 | 118.18 (12) |
| C6—C1—H1A | 119.8 | N2—C8—C9 | 109.98 (11) |
| C2—C1—H1A | 119.8 | N2—C8—H8A | 109.7 |
| C1—C2—C3 | 122.29 (11) | C9—C8—H8A | 109.7 |
| C1—C2—N1 | 115.93 (11) | N2—C8—H8B | 109.7 |
| C3—C2—N1 | 121.78 (11) | C9—C8—H8B | 109.7 |
| N2—C3—C4 | 120.00 (11) | H8A—C8—H8B | 108.2 |
| N2—C3—C2 | 124.66 (12) | C8—C9—H9A | 109.5 |
| C4—C3—C2 | 115.33 (11) | C8—C9—H9B | 109.5 |
| C5—C4—C3 | 121.59 (12) | H9A—C9—H9B | 109.5 |
| C5—C4—H4A | 119.2 | C8—C9—H9C | 109.5 |
| C3—C4—H4A | 119.2 | H9A—C9—H9C | 109.5 |
| C4—C5—C6 | 121.69 (12) | H9B—C9—H9C | 109.5 |
| C6—C1—C2—C3 | −0.9 (2) | N2—C3—C4—C5 | 179.34 (13) |
| C6—C1—C2—N1 | 178.84 (11) | C2—C3—C4—C5 | −2.10 (19) |
| O2—N1—C2—C1 | −14.67 (18) | C3—C4—C5—C6 | −0.3 (2) |
| O1—N1—C2—C1 | 165.34 (12) | C2—C1—C6—C5 | −1.6 (2) |
| O2—N1—C2—C3 | 165.04 (12) | C2—C1—C6—C7 | 177.98 (12) |
| O1—N1—C2—C3 | −14.95 (19) | C4—C5—C6—C1 | 2.2 (2) |
| C8—N2—C3—C4 | 0.74 (19) | C4—C5—C6—C7 | −177.39 (13) |
| C8—N2—C3—C2 | −177.68 (12) | C1—C6—C7—O3 | −178.93 (12) |
| C1—C2—C3—N2 | −178.83 (12) | C5—C6—C7—O3 | 0.7 (2) |
| N1—C2—C3—N2 | 1.5 (2) | C1—C6—C7—O4 | 0.9 (2) |
| C1—C2—C3—C4 | 2.69 (19) | C5—C6—C7—O4 | −179.51 (13) |
| N1—C2—C3—C4 | −177.01 (11) | C3—N2—C8—C9 | 177.29 (12) |
| H··· | ||||
| O4—H1O4···O3i | 0.82 | 1.80 | 2.6092 (15) | 168 |
| N2—H1N2···O1 | 0.831 (19) | 2.052 (18) | 2.6634 (15) | 130.0 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H1O4⋯O3i | 0.82 | 1.80 | 2.6092 (15) | 168 |
| N2—H1N2⋯O1 | 0.831 (19) | 2.052 (18) | 2.6634 (15) | 130.0 (16) |
Symmetry code: (i) .