Literature DB >> 21203212

Ethyl 3-nitro-4-(propyl-amino)benzoate.

Siti Marina Mohd Maidin, Aisyah Saad Abdul Rahim, Shafida Abdul Hamid, Reza Kia, Hoong-Kun Fun.   

Abstract

In the title compound, C(12)H(16)N(2)O(4), intra-molecular N-H⋯O and C-H⋯O hydrogen bonds generate S(6) and S(5) ring motifs, respectively. The nitro group is almost coplanar with the benzene ring, forming a dihedral angle of 6.2 (2)°. In the crystal structure, neighbouring mol-ecules are linked together by inter-molecular N-H⋯O and O⋯O inter-actions. Of interest are the short inter-molecular O⋯O inter-actions which cause a stacking arrangement of the mol-ecules along the a axis.

Entities:  

Year:  2008        PMID: 21203212      PMCID: PMC2962130          DOI: 10.1107/S1600536808021314

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related literature, see: Ishida et al. (2006 ▶); Vinodkumar et al. (2008 ▶). Rida et al. (2005 ▶); Harikrishnan et al. (2008 ▶); Moore et al. (2005 ▶).

Experimental

Crystal data

C12H16N2O4 M = 252.27 Triclinic, a = 4.4914 (4) Å b = 12.0828 (9) Å c = 12.8763 (9) Å α = 62.494 (4)° β = 81.055 (4)° γ = 83.494 (4)° V = 611.57 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100.0 (1) K 0.51 × 0.26 × 0.26 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.949, T max = 0.974 12286 measured reflections 2372 independent reflections 1946 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.252 S = 1.17 2372 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021314/at2590sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021314/at2590Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N2O4Z = 2
Mr = 252.27F000 = 268
Triclinic, P1Dx = 1.370 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 4.4914 (4) ÅCell parameters from 6896 reflections
b = 12.0828 (9) Åθ = 3.2–33.0º
c = 12.8763 (9) ŵ = 0.10 mm1
α = 62.494 (4)ºT = 100.0 (1) K
β = 81.055 (4)ºNeedle, yellow
γ = 83.494 (4)º0.51 × 0.26 × 0.26 mm
V = 611.57 (8) Å3
Bruker SMART APEXII CCD area-detector diffractometer2372 independent reflections
Radiation source: fine-focus sealed tube1946 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.041
T = 100.0(1) Kθmax = 26.0º
φ and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −5→5
Tmin = 0.949, Tmax = 0.974k = −14→14
12286 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.076H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.252  w = 1/[σ2(Fo2) + (0.1098P)2 + 1.609P] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
2372 reflectionsΔρmax = 0.47 e Å3
169 parametersΔρmin = −0.33 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2464 (7)0.4136 (3)0.5558 (2)0.0326 (7)
O20.5971 (6)0.2725 (2)0.6301 (2)0.0316 (7)
O30.8766 (6)0.1455 (2)1.0099 (2)0.0239 (6)
O40.7178 (6)0.2578 (2)1.1092 (2)0.0272 (6)
N10.0274 (7)0.5600 (3)0.6530 (3)0.0217 (7)
N20.4117 (7)0.3535 (3)0.6346 (3)0.0228 (7)
C10.3823 (8)0.3799 (3)0.7345 (3)0.0195 (7)
C20.5528 (8)0.3013 (3)0.8258 (3)0.0200 (7)
H2A0.67750.23740.81920.024*
C30.5379 (8)0.3177 (3)0.9255 (3)0.0200 (7)
C40.3490 (8)0.4159 (3)0.9327 (3)0.0210 (7)
H4A0.33580.42740.99990.025*
C50.1849 (8)0.4945 (3)0.8436 (3)0.0215 (7)
H5A0.06500.55890.85120.026*
C60.1917 (8)0.4809 (3)0.7389 (3)0.0203 (7)
C7−0.1636 (8)0.6655 (3)0.6552 (3)0.0223 (7)
H7A−0.27550.63880.73300.027*
H7B−0.30860.68950.59910.027*
C80.0108 (8)0.7792 (3)0.6262 (3)0.0238 (8)
H8A0.15180.75720.68340.029*
H8B0.12510.80650.54880.029*
C9−0.2061 (9)0.8850 (3)0.6280 (3)0.0281 (8)
H9A−0.09320.95320.61690.042*
H9B−0.33040.85570.70250.042*
H9C−0.33130.91260.56570.042*
C100.7166 (8)0.2397 (3)1.0240 (3)0.0212 (7)
C111.0559 (8)0.0633 (3)1.1042 (3)0.0253 (8)
H11A1.13450.11151.13580.030*
H11B1.22570.02611.07280.030*
C120.8678 (9)−0.0386 (3)1.2015 (3)0.0292 (8)
H12A0.9926−0.09431.26070.044*
H12B0.7837−0.08431.16960.044*
H12C0.7077−0.00201.23610.044*
H1N10.031 (11)0.547 (4)0.593 (5)0.038 (13)*
U11U22U33U12U13U23
O10.0432 (16)0.0348 (15)0.0271 (14)0.0142 (12)−0.0198 (12)−0.0189 (12)
O20.0420 (16)0.0317 (14)0.0240 (14)0.0155 (12)−0.0099 (11)−0.0171 (11)
O30.0281 (13)0.0254 (13)0.0187 (12)0.0036 (10)−0.0072 (10)−0.0099 (10)
O40.0372 (15)0.0284 (13)0.0185 (12)0.0009 (11)−0.0075 (10)−0.0120 (11)
N10.0265 (16)0.0218 (14)0.0198 (15)0.0033 (12)−0.0064 (12)−0.0117 (12)
N20.0290 (16)0.0206 (14)0.0189 (14)0.0030 (12)−0.0069 (12)−0.0087 (12)
C10.0248 (17)0.0185 (16)0.0145 (16)−0.0023 (13)−0.0022 (13)−0.0065 (13)
C20.0232 (17)0.0182 (15)0.0186 (16)−0.0010 (13)−0.0024 (13)−0.0084 (13)
C30.0211 (17)0.0211 (16)0.0170 (16)−0.0035 (13)−0.0014 (13)−0.0077 (13)
C40.0275 (18)0.0212 (16)0.0143 (15)−0.0045 (13)−0.0003 (13)−0.0080 (13)
C50.0228 (17)0.0216 (16)0.0201 (17)−0.0017 (13)−0.0005 (13)−0.0100 (14)
C60.0200 (16)0.0200 (16)0.0199 (17)−0.0032 (13)−0.0015 (13)−0.0080 (13)
C70.0235 (17)0.0215 (17)0.0219 (17)0.0052 (13)−0.0060 (13)−0.0101 (14)
C80.0248 (18)0.0235 (17)0.0215 (17)0.0016 (14)−0.0030 (13)−0.0094 (14)
C90.033 (2)0.0240 (18)0.0261 (19)0.0008 (15)−0.0019 (15)−0.0112 (15)
C100.0228 (17)0.0204 (16)0.0188 (16)−0.0036 (13)−0.0012 (13)−0.0074 (13)
C110.0249 (18)0.0290 (18)0.0208 (17)0.0048 (14)−0.0080 (14)−0.0101 (15)
C120.034 (2)0.0262 (18)0.0247 (19)0.0051 (15)−0.0066 (15)−0.0101 (15)
O1—N21.241 (4)C5—C61.426 (5)
O2—N21.228 (4)C5—H5A0.9300
O3—C101.345 (4)C7—C81.524 (5)
O3—C111.455 (4)C7—H7A0.9700
O4—C101.214 (4)C7—H7B0.9700
N1—C61.342 (4)C8—C91.523 (5)
N1—C71.462 (4)C8—H8A0.9700
N1—H1N10.86 (5)C8—H8B0.9700
N2—C11.445 (4)C9—H9A0.9600
C1—C21.398 (5)C9—H9B0.9600
C1—C61.428 (5)C9—H9C0.9600
C2—C31.378 (5)C11—C121.511 (5)
C2—H2A0.9300C11—H11A0.9700
C3—C41.409 (5)C11—H11B0.9700
C3—C101.477 (5)C12—H12A0.9600
C4—C51.364 (5)C12—H12B0.9600
C4—H4A0.9300C12—H12C0.9600
O1···O1i2.914 (5)O1···O1ii2.984 (5)
C10—O3—C11116.1 (3)C8—C7—H7B108.8
C6—N1—C7125.0 (3)H7A—C7—H7B107.7
C6—N1—H1N1118 (3)C9—C8—C7110.2 (3)
C7—N1—H1N1117 (3)C9—C8—H8A109.6
O2—N2—O1121.8 (3)C7—C8—H8A109.6
O2—N2—C1119.5 (3)C9—C8—H8B109.6
O1—N2—C1118.6 (3)C7—C8—H8B109.6
C2—C1—C6122.1 (3)H8A—C8—H8B108.1
C2—C1—N2116.1 (3)C8—C9—H9A109.5
C6—C1—N2121.8 (3)C8—C9—H9B109.5
C3—C2—C1120.6 (3)H9A—C9—H9B109.5
C3—C2—H2A119.7C8—C9—H9C109.5
C1—C2—H2A119.7H9A—C9—H9C109.5
C2—C3—C4118.4 (3)H9B—C9—H9C109.5
C2—C3—C10123.3 (3)O4—C10—O3123.5 (3)
C4—C3—C10118.2 (3)O4—C10—C3123.7 (3)
C5—C4—C3121.6 (3)O3—C10—C3112.8 (3)
C5—C4—H4A119.2O3—C11—C12110.8 (3)
C3—C4—H4A119.2O3—C11—H11A109.5
C4—C5—C6122.0 (3)C12—C11—H11A109.5
C4—C5—H5A119.0O3—C11—H11B109.5
C6—C5—H5A119.0C12—C11—H11B109.5
N1—C6—C5120.4 (3)H11A—C11—H11B108.1
N1—C6—C1124.4 (3)C11—C12—H12A109.5
C5—C6—C1115.2 (3)C11—C12—H12B109.5
N1—C7—C8113.8 (3)H12A—C12—H12B109.5
N1—C7—H7A108.8C11—C12—H12C109.5
C8—C7—H7A108.8H12A—C12—H12C109.5
N1—C7—H7B108.8H12B—C12—H12C109.5
O2—N2—C1—C2−5.7 (5)C4—C5—C6—C1−0.1 (5)
O1—N2—C1—C2174.0 (3)C2—C1—C6—N1178.9 (3)
O2—N2—C1—C6173.9 (3)N2—C1—C6—N1−0.5 (5)
O1—N2—C1—C6−6.5 (5)C2—C1—C6—C5−0.9 (5)
C6—C1—C2—C31.2 (5)N2—C1—C6—C5179.6 (3)
N2—C1—C2—C3−179.2 (3)C6—N1—C7—C878.2 (4)
C1—C2—C3—C4−0.5 (5)N1—C7—C8—C9178.8 (3)
C1—C2—C3—C10−178.7 (3)C11—O3—C10—O40.3 (5)
C2—C3—C4—C5−0.5 (5)C11—O3—C10—C3−179.2 (3)
C10—C3—C4—C5177.8 (3)C2—C3—C10—O4175.7 (3)
C3—C4—C5—C60.9 (5)C4—C3—C10—O4−2.5 (5)
C7—N1—C6—C51.2 (5)C2—C3—C10—O3−4.8 (5)
C7—N1—C6—C1−178.6 (3)C4—C3—C10—O3177.0 (3)
C4—C5—C6—N1180.0 (3)C10—O3—C11—C1285.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.85 (5)2.00 (6)2.633 (5)131 (5)
N1—H1N1···O1i0.85 (5)2.28 (5)2.998 (4)141 (5)
C2—H2A···O20.932.352.674 (4)100
Table 1

Selected interatomic distances (Å)

O1⋯O1i2.914 (5)
O1⋯O1ii2.984 (5)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O10.85 (5)2.00 (6)2.633 (5)131 (5)
N1—H1N1⋯O1i0.85 (5)2.28 (5)2.998 (4)141 (5)
C2—H2A⋯O20.932.352.674 (4)100

Symmetry code: (i) .

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