| Literature DB >> 21203212 |
Siti Marina Mohd Maidin, Aisyah Saad Abdul Rahim, Shafida Abdul Hamid, Reza Kia, Hoong-Kun Fun.
Abstract
In the title compound, C(12)H(16)N(2)O(4), intra-molecular N-H⋯O and C-H⋯O hydrogen bonds generate S(6) and S(5) ring motifs, respectively. The nitro group is almost coplanar with the benzene ring, forming a dihedral angle of 6.2 (2)°. In the crystal structure, neighbouring mol-ecules are linked together by inter-molecular N-H⋯O and O⋯O inter-actions. Of interest are the short inter-molecular O⋯O inter-actions which cause a stacking arrangement of the mol-ecules along the a axis.Entities:
Year: 2008 PMID: 21203212 PMCID: PMC2962130 DOI: 10.1107/S1600536808021314
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H16N2O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 6896 reflections | |
| θ = 3.2–33.0º | |
| µ = 0.10 mm−1 | |
| α = 62.494 (4)º | |
| β = 81.055 (4)º | Needle, yellow |
| γ = 83.494 (4)º | 0.51 × 0.26 × 0.26 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 2372 independent reflections |
| Radiation source: fine-focus sealed tube | 1946 reflections with |
| Monochromator: graphite | |
| θmax = 26.0º | |
| φ and ω scans | θmin = 1.8º |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | |
| 12286 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2372 reflections | Δρmax = 0.47 e Å−3 |
| 169 parameters | Δρmin = −0.33 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.2464 (7) | 0.4136 (3) | 0.5558 (2) | 0.0326 (7) | |
| O2 | 0.5971 (6) | 0.2725 (2) | 0.6301 (2) | 0.0316 (7) | |
| O3 | 0.8766 (6) | 0.1455 (2) | 1.0099 (2) | 0.0239 (6) | |
| O4 | 0.7178 (6) | 0.2578 (2) | 1.1092 (2) | 0.0272 (6) | |
| N1 | 0.0274 (7) | 0.5600 (3) | 0.6530 (3) | 0.0217 (7) | |
| N2 | 0.4117 (7) | 0.3535 (3) | 0.6346 (3) | 0.0228 (7) | |
| C1 | 0.3823 (8) | 0.3799 (3) | 0.7345 (3) | 0.0195 (7) | |
| C2 | 0.5528 (8) | 0.3013 (3) | 0.8258 (3) | 0.0200 (7) | |
| H2A | 0.6775 | 0.2374 | 0.8192 | 0.024* | |
| C3 | 0.5379 (8) | 0.3177 (3) | 0.9255 (3) | 0.0200 (7) | |
| C4 | 0.3490 (8) | 0.4159 (3) | 0.9327 (3) | 0.0210 (7) | |
| H4A | 0.3358 | 0.4274 | 0.9999 | 0.025* | |
| C5 | 0.1849 (8) | 0.4945 (3) | 0.8436 (3) | 0.0215 (7) | |
| H5A | 0.0650 | 0.5589 | 0.8512 | 0.026* | |
| C6 | 0.1917 (8) | 0.4809 (3) | 0.7389 (3) | 0.0203 (7) | |
| C7 | −0.1636 (8) | 0.6655 (3) | 0.6552 (3) | 0.0223 (7) | |
| H7A | −0.2755 | 0.6388 | 0.7330 | 0.027* | |
| H7B | −0.3086 | 0.6895 | 0.5991 | 0.027* | |
| C8 | 0.0108 (8) | 0.7792 (3) | 0.6262 (3) | 0.0238 (8) | |
| H8A | 0.1518 | 0.7572 | 0.6834 | 0.029* | |
| H8B | 0.1251 | 0.8065 | 0.5488 | 0.029* | |
| C9 | −0.2061 (9) | 0.8850 (3) | 0.6280 (3) | 0.0281 (8) | |
| H9A | −0.0932 | 0.9532 | 0.6169 | 0.042* | |
| H9B | −0.3304 | 0.8557 | 0.7025 | 0.042* | |
| H9C | −0.3313 | 0.9126 | 0.5657 | 0.042* | |
| C10 | 0.7166 (8) | 0.2397 (3) | 1.0240 (3) | 0.0212 (7) | |
| C11 | 1.0559 (8) | 0.0633 (3) | 1.1042 (3) | 0.0253 (8) | |
| H11A | 1.1345 | 0.1115 | 1.1358 | 0.030* | |
| H11B | 1.2257 | 0.0261 | 1.0728 | 0.030* | |
| C12 | 0.8678 (9) | −0.0386 (3) | 1.2015 (3) | 0.0292 (8) | |
| H12A | 0.9926 | −0.0943 | 1.2607 | 0.044* | |
| H12B | 0.7837 | −0.0843 | 1.1696 | 0.044* | |
| H12C | 0.7077 | −0.0020 | 1.2361 | 0.044* | |
| H1N1 | 0.031 (11) | 0.547 (4) | 0.593 (5) | 0.038 (13)* |
| O1 | 0.0432 (16) | 0.0348 (15) | 0.0271 (14) | 0.0142 (12) | −0.0198 (12) | −0.0189 (12) |
| O2 | 0.0420 (16) | 0.0317 (14) | 0.0240 (14) | 0.0155 (12) | −0.0099 (11) | −0.0171 (11) |
| O3 | 0.0281 (13) | 0.0254 (13) | 0.0187 (12) | 0.0036 (10) | −0.0072 (10) | −0.0099 (10) |
| O4 | 0.0372 (15) | 0.0284 (13) | 0.0185 (12) | 0.0009 (11) | −0.0075 (10) | −0.0120 (11) |
| N1 | 0.0265 (16) | 0.0218 (14) | 0.0198 (15) | 0.0033 (12) | −0.0064 (12) | −0.0117 (12) |
| N2 | 0.0290 (16) | 0.0206 (14) | 0.0189 (14) | 0.0030 (12) | −0.0069 (12) | −0.0087 (12) |
| C1 | 0.0248 (17) | 0.0185 (16) | 0.0145 (16) | −0.0023 (13) | −0.0022 (13) | −0.0065 (13) |
| C2 | 0.0232 (17) | 0.0182 (15) | 0.0186 (16) | −0.0010 (13) | −0.0024 (13) | −0.0084 (13) |
| C3 | 0.0211 (17) | 0.0211 (16) | 0.0170 (16) | −0.0035 (13) | −0.0014 (13) | −0.0077 (13) |
| C4 | 0.0275 (18) | 0.0212 (16) | 0.0143 (15) | −0.0045 (13) | −0.0003 (13) | −0.0080 (13) |
| C5 | 0.0228 (17) | 0.0216 (16) | 0.0201 (17) | −0.0017 (13) | −0.0005 (13) | −0.0100 (14) |
| C6 | 0.0200 (16) | 0.0200 (16) | 0.0199 (17) | −0.0032 (13) | −0.0015 (13) | −0.0080 (13) |
| C7 | 0.0235 (17) | 0.0215 (17) | 0.0219 (17) | 0.0052 (13) | −0.0060 (13) | −0.0101 (14) |
| C8 | 0.0248 (18) | 0.0235 (17) | 0.0215 (17) | 0.0016 (14) | −0.0030 (13) | −0.0094 (14) |
| C9 | 0.033 (2) | 0.0240 (18) | 0.0261 (19) | 0.0008 (15) | −0.0019 (15) | −0.0112 (15) |
| C10 | 0.0228 (17) | 0.0204 (16) | 0.0188 (16) | −0.0036 (13) | −0.0012 (13) | −0.0074 (13) |
| C11 | 0.0249 (18) | 0.0290 (18) | 0.0208 (17) | 0.0048 (14) | −0.0080 (14) | −0.0101 (15) |
| C12 | 0.034 (2) | 0.0262 (18) | 0.0247 (19) | 0.0051 (15) | −0.0066 (15) | −0.0101 (15) |
| O1—N2 | 1.241 (4) | C5—C6 | 1.426 (5) |
| O2—N2 | 1.228 (4) | C5—H5A | 0.9300 |
| O3—C10 | 1.345 (4) | C7—C8 | 1.524 (5) |
| O3—C11 | 1.455 (4) | C7—H7A | 0.9700 |
| O4—C10 | 1.214 (4) | C7—H7B | 0.9700 |
| N1—C6 | 1.342 (4) | C8—C9 | 1.523 (5) |
| N1—C7 | 1.462 (4) | C8—H8A | 0.9700 |
| N1—H1N1 | 0.86 (5) | C8—H8B | 0.9700 |
| N2—C1 | 1.445 (4) | C9—H9A | 0.9600 |
| C1—C2 | 1.398 (5) | C9—H9B | 0.9600 |
| C1—C6 | 1.428 (5) | C9—H9C | 0.9600 |
| C2—C3 | 1.378 (5) | C11—C12 | 1.511 (5) |
| C2—H2A | 0.9300 | C11—H11A | 0.9700 |
| C3—C4 | 1.409 (5) | C11—H11B | 0.9700 |
| C3—C10 | 1.477 (5) | C12—H12A | 0.9600 |
| C4—C5 | 1.364 (5) | C12—H12B | 0.9600 |
| C4—H4A | 0.9300 | C12—H12C | 0.9600 |
| O1···O1i | 2.914 (5) | O1···O1ii | 2.984 (5) |
| C10—O3—C11 | 116.1 (3) | C8—C7—H7B | 108.8 |
| C6—N1—C7 | 125.0 (3) | H7A—C7—H7B | 107.7 |
| C6—N1—H1N1 | 118 (3) | C9—C8—C7 | 110.2 (3) |
| C7—N1—H1N1 | 117 (3) | C9—C8—H8A | 109.6 |
| O2—N2—O1 | 121.8 (3) | C7—C8—H8A | 109.6 |
| O2—N2—C1 | 119.5 (3) | C9—C8—H8B | 109.6 |
| O1—N2—C1 | 118.6 (3) | C7—C8—H8B | 109.6 |
| C2—C1—C6 | 122.1 (3) | H8A—C8—H8B | 108.1 |
| C2—C1—N2 | 116.1 (3) | C8—C9—H9A | 109.5 |
| C6—C1—N2 | 121.8 (3) | C8—C9—H9B | 109.5 |
| C3—C2—C1 | 120.6 (3) | H9A—C9—H9B | 109.5 |
| C3—C2—H2A | 119.7 | C8—C9—H9C | 109.5 |
| C1—C2—H2A | 119.7 | H9A—C9—H9C | 109.5 |
| C2—C3—C4 | 118.4 (3) | H9B—C9—H9C | 109.5 |
| C2—C3—C10 | 123.3 (3) | O4—C10—O3 | 123.5 (3) |
| C4—C3—C10 | 118.2 (3) | O4—C10—C3 | 123.7 (3) |
| C5—C4—C3 | 121.6 (3) | O3—C10—C3 | 112.8 (3) |
| C5—C4—H4A | 119.2 | O3—C11—C12 | 110.8 (3) |
| C3—C4—H4A | 119.2 | O3—C11—H11A | 109.5 |
| C4—C5—C6 | 122.0 (3) | C12—C11—H11A | 109.5 |
| C4—C5—H5A | 119.0 | O3—C11—H11B | 109.5 |
| C6—C5—H5A | 119.0 | C12—C11—H11B | 109.5 |
| N1—C6—C5 | 120.4 (3) | H11A—C11—H11B | 108.1 |
| N1—C6—C1 | 124.4 (3) | C11—C12—H12A | 109.5 |
| C5—C6—C1 | 115.2 (3) | C11—C12—H12B | 109.5 |
| N1—C7—C8 | 113.8 (3) | H12A—C12—H12B | 109.5 |
| N1—C7—H7A | 108.8 | C11—C12—H12C | 109.5 |
| C8—C7—H7A | 108.8 | H12A—C12—H12C | 109.5 |
| N1—C7—H7B | 108.8 | H12B—C12—H12C | 109.5 |
| O2—N2—C1—C2 | −5.7 (5) | C4—C5—C6—C1 | −0.1 (5) |
| O1—N2—C1—C2 | 174.0 (3) | C2—C1—C6—N1 | 178.9 (3) |
| O2—N2—C1—C6 | 173.9 (3) | N2—C1—C6—N1 | −0.5 (5) |
| O1—N2—C1—C6 | −6.5 (5) | C2—C1—C6—C5 | −0.9 (5) |
| C6—C1—C2—C3 | 1.2 (5) | N2—C1—C6—C5 | 179.6 (3) |
| N2—C1—C2—C3 | −179.2 (3) | C6—N1—C7—C8 | 78.2 (4) |
| C1—C2—C3—C4 | −0.5 (5) | N1—C7—C8—C9 | 178.8 (3) |
| C1—C2—C3—C10 | −178.7 (3) | C11—O3—C10—O4 | 0.3 (5) |
| C2—C3—C4—C5 | −0.5 (5) | C11—O3—C10—C3 | −179.2 (3) |
| C10—C3—C4—C5 | 177.8 (3) | C2—C3—C10—O4 | 175.7 (3) |
| C3—C4—C5—C6 | 0.9 (5) | C4—C3—C10—O4 | −2.5 (5) |
| C7—N1—C6—C5 | 1.2 (5) | C2—C3—C10—O3 | −4.8 (5) |
| C7—N1—C6—C1 | −178.6 (3) | C4—C3—C10—O3 | 177.0 (3) |
| C4—C5—C6—N1 | 180.0 (3) | C10—O3—C11—C12 | 85.5 (4) |
| H··· | ||||
| N1—H1N1···O1 | 0.85 (5) | 2.00 (6) | 2.633 (5) | 131 (5) |
| N1—H1N1···O1i | 0.85 (5) | 2.28 (5) | 2.998 (4) | 141 (5) |
| C2—H2A···O2 | 0.93 | 2.35 | 2.674 (4) | 100 |
Selected interatomic distances (Å)
| O1⋯O1i | 2.914 (5) |
| O1⋯O1ii | 2.984 (5) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.85 (5) | 2.00 (6) | 2.633 (5) | 131 (5) |
| N1—H1 | 0.85 (5) | 2.28 (5) | 2.998 (4) | 141 (5) |
| C2—H2 | 0.93 | 2.35 | 2.674 (4) | 100 |
Symmetry code: (i) .