| Literature DB >> 21582214 |
Shivanagere Nagojappa Narendra Babu, Aisyah Saad Abdul Rahim, Hasnah Osman, Ibrahim Abdul Razak, Hoong-Kun Fun.
Abstract
In the title compound, C(9)H(8)FNO(4), C-H⋯O inter-molecular inter-actions form dimers with R(2) (2)(10) motifs. These dimers are arranged into chains parallel to the b axis and the chains are stacked down the c axis.Entities:
Year: 2009 PMID: 21582214 PMCID: PMC2968581 DOI: 10.1107/S1600536809005224
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8FNO4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5027 reflections |
| θ = 2.6–30.8° | |
| µ = 0.14 mm−1 | |
| β = 94.410 (2)° | Block, colourless |
| 0.55 × 0.22 × 0.09 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2913 independent reflections |
| Radiation source: sealed tube | 2411 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.1°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 12540 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2913 reflections | Δρmax = 0.55 e Å−3 |
| 138 parameters | Δρmin = −0.36 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.018 (4) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.04351 (7) | 0.10679 (6) | 0.18019 (12) | 0.0241 (2) | |
| O1 | 0.07165 (9) | 0.29746 (7) | 0.29028 (14) | 0.0240 (2) | |
| O2 | −0.04092 (9) | 0.39394 (6) | 0.08249 (15) | 0.0247 (2) | |
| O3 | −0.52330 (8) | 0.30897 (6) | −0.00372 (14) | 0.0203 (2) | |
| O4 | −0.58597 (9) | 0.14638 (7) | −0.02358 (16) | 0.0276 (2) | |
| N1 | −0.02296 (10) | 0.31401 (7) | 0.16902 (15) | 0.0172 (2) | |
| C1 | −0.31523 (12) | 0.08546 (9) | 0.06256 (18) | 0.0197 (2) | |
| H1A | −0.3804 | 0.0356 | 0.0410 | 0.024* | |
| C2 | −0.18146 (12) | 0.05833 (9) | 0.10726 (19) | 0.0211 (3) | |
| H2A | −0.1566 | −0.0091 | 0.1139 | 0.025* | |
| C3 | −0.08581 (11) | 0.13301 (9) | 0.14173 (17) | 0.0181 (2) | |
| C4 | −0.12280 (11) | 0.23409 (8) | 0.12960 (16) | 0.0154 (2) | |
| C5 | −0.25648 (11) | 0.26145 (8) | 0.08154 (16) | 0.0154 (2) | |
| H5A | −0.2807 | 0.3290 | 0.0710 | 0.018* | |
| C6 | −0.35338 (11) | 0.18648 (8) | 0.04945 (17) | 0.0161 (2) | |
| C7 | −0.49936 (11) | 0.21032 (9) | 0.00323 (18) | 0.0179 (2) | |
| C8 | −0.66549 (12) | 0.33789 (10) | −0.0398 (2) | 0.0231 (3) | |
| H8A | −0.7170 | 0.3145 | 0.0648 | 0.028* | |
| H8B | −0.7035 | 0.3081 | −0.1597 | 0.028* | |
| C9 | −0.67127 (13) | 0.45039 (10) | −0.0529 (2) | 0.0280 (3) | |
| H9A | −0.7638 | 0.4716 | −0.0713 | 0.042* | |
| H9B | −0.6233 | 0.4725 | −0.1603 | 0.042* | |
| H9C | −0.6304 | 0.4791 | 0.0646 | 0.042* |
| F1 | 0.0168 (3) | 0.0239 (4) | 0.0312 (4) | 0.0077 (3) | 0.0003 (3) | 0.0020 (3) |
| O1 | 0.0153 (4) | 0.0295 (5) | 0.0264 (5) | 0.0006 (3) | −0.0037 (3) | 0.0008 (4) |
| O2 | 0.0228 (4) | 0.0174 (4) | 0.0333 (5) | −0.0018 (3) | −0.0025 (4) | 0.0042 (4) |
| O3 | 0.0123 (4) | 0.0155 (4) | 0.0324 (5) | 0.0009 (3) | −0.0017 (3) | 0.0002 (3) |
| O4 | 0.0191 (4) | 0.0176 (4) | 0.0453 (6) | −0.0038 (3) | −0.0041 (4) | 0.0012 (4) |
| N1 | 0.0141 (4) | 0.0180 (5) | 0.0196 (5) | 0.0007 (3) | 0.0017 (3) | −0.0015 (4) |
| C1 | 0.0201 (5) | 0.0148 (5) | 0.0242 (6) | −0.0008 (4) | 0.0010 (4) | −0.0002 (4) |
| C2 | 0.0229 (6) | 0.0140 (5) | 0.0263 (6) | 0.0037 (4) | 0.0015 (5) | 0.0004 (4) |
| C3 | 0.0166 (5) | 0.0185 (5) | 0.0192 (5) | 0.0049 (4) | 0.0015 (4) | 0.0006 (4) |
| C4 | 0.0144 (5) | 0.0158 (5) | 0.0159 (5) | 0.0007 (4) | 0.0010 (4) | 0.0001 (4) |
| C5 | 0.0144 (5) | 0.0149 (5) | 0.0169 (5) | 0.0018 (4) | 0.0014 (4) | 0.0005 (4) |
| C6 | 0.0148 (5) | 0.0152 (5) | 0.0181 (5) | 0.0005 (4) | 0.0004 (4) | −0.0001 (4) |
| C7 | 0.0157 (5) | 0.0162 (5) | 0.0216 (5) | −0.0003 (4) | 0.0005 (4) | 0.0003 (4) |
| C8 | 0.0119 (5) | 0.0218 (6) | 0.0350 (7) | 0.0007 (4) | −0.0013 (4) | 0.0022 (5) |
| C9 | 0.0188 (6) | 0.0213 (6) | 0.0426 (8) | 0.0040 (4) | −0.0050 (5) | −0.0051 (5) |
| F1—C3 | 1.3368 (13) | C3—C4 | 1.3932 (16) |
| O1—N1 | 1.2308 (13) | C4—C5 | 1.3912 (14) |
| O2—N1 | 1.2261 (13) | C5—C6 | 1.3906 (15) |
| O3—C7 | 1.3326 (14) | C5—H5A | 0.9300 |
| O3—C8 | 1.4653 (13) | C6—C7 | 1.4935 (15) |
| O4—C7 | 1.2127 (14) | C8—C9 | 1.4984 (19) |
| N1—C4 | 1.4638 (15) | C8—H8A | 0.9700 |
| C1—C2 | 1.3876 (16) | C8—H8B | 0.9700 |
| C1—C6 | 1.3959 (16) | C9—H9A | 0.9600 |
| C1—H1A | 0.9300 | C9—H9B | 0.9600 |
| C2—C3 | 1.3814 (17) | C9—H9C | 0.9600 |
| C2—H2A | 0.9300 | ||
| C7—O3—C8 | 115.52 (9) | C5—C6—C1 | 119.85 (10) |
| O2—N1—O1 | 124.29 (10) | C5—C6—C7 | 122.00 (10) |
| O2—N1—C4 | 117.80 (9) | C1—C6—C7 | 118.14 (10) |
| O1—N1—C4 | 117.89 (10) | O4—C7—O3 | 124.15 (11) |
| C2—C1—C6 | 120.96 (11) | O4—C7—C6 | 123.28 (11) |
| C2—C1—H1A | 119.5 | O3—C7—C6 | 112.57 (9) |
| C6—C1—H1A | 119.5 | O3—C8—C9 | 107.69 (9) |
| C3—C2—C1 | 119.01 (11) | O3—C8—H8A | 110.2 |
| C3—C2—H2A | 120.5 | C9—C8—H8A | 110.2 |
| C1—C2—H2A | 120.5 | O3—C8—H8B | 110.2 |
| F1—C3—C2 | 118.93 (10) | C9—C8—H8B | 110.2 |
| F1—C3—C4 | 120.52 (10) | H8A—C8—H8B | 108.5 |
| C2—C3—C4 | 120.51 (10) | C8—C9—H9A | 109.5 |
| C5—C4—C3 | 120.56 (10) | C8—C9—H9B | 109.5 |
| C5—C4—N1 | 118.32 (10) | H9A—C9—H9B | 109.5 |
| C3—C4—N1 | 121.11 (10) | C8—C9—H9C | 109.5 |
| C6—C5—C4 | 119.08 (10) | H9A—C9—H9C | 109.5 |
| C6—C5—H5A | 120.5 | H9B—C9—H9C | 109.5 |
| C4—C5—H5A | 120.5 | ||
| C6—C1—C2—C3 | 0.93 (19) | N1—C4—C5—C6 | −178.04 (10) |
| C1—C2—C3—F1 | −178.41 (11) | C4—C5—C6—C1 | −1.07 (18) |
| C1—C2—C3—C4 | −0.74 (19) | C4—C5—C6—C7 | 178.12 (10) |
| F1—C3—C4—C5 | 177.27 (10) | C2—C1—C6—C5 | −0.02 (19) |
| C2—C3—C4—C5 | −0.36 (18) | C2—C1—C6—C7 | −179.25 (11) |
| F1—C3—C4—N1 | −3.44 (17) | C8—O3—C7—O4 | 2.20 (18) |
| C2—C3—C4—N1 | 178.93 (11) | C8—O3—C7—C6 | −177.35 (10) |
| O2—N1—C4—C5 | −31.36 (16) | C5—C6—C7—O4 | −179.29 (12) |
| O1—N1—C4—C5 | 146.88 (11) | C1—C6—C7—O4 | −0.09 (19) |
| O2—N1—C4—C3 | 149.33 (12) | C5—C6—C7—O3 | 0.26 (16) |
| O1—N1—C4—C3 | −32.42 (16) | C1—C6—C7—O3 | 179.47 (11) |
| C3—C4—C5—C6 | 1.27 (17) | C7—O3—C8—C9 | −177.07 (11) |
| H··· | ||||
| C1—H1A···O4i | 0.93 | 2.44 | 3.2380 (15) | 144 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1 | 0.93 | 2.44 | 3.2380 (15) | 144 |
Symmetry code: (i) .