Literature DB >> 21583865

(E)-2-Hydroxy-naphthalene-1-carb-al-de-hyde semicarbazone.

Hua-Jie Xu, Na-Na Du, Xue-Yue Jiang, Liang-Quan Sheng, Yu-Peng Tian.   

Abstract

The title compound, C(12)H(11)N(3)O(2), adopts an E or trans configuration with respect to the C=N bond. There is an intra-molecular O-H⋯N hydrogen bond involving the hydroxyl H atom and an N atom of the hydrazine group. In the crystal structure, mol-ecules are connected via N-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21583865      PMCID: PMC2977729          DOI: 10.1107/S160053680901174X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential pharmacological and anti­tumor properties of hydrazones and Schiff bases, see: Karthikeyan et al. (2006 ▶); Khattab (2005 ▶); Kucukguzel et al. (2006 ▶). For related structures, see: Okabe et al. (1993 ▶); Zhang et al. (1999 ▶); Xu et al. (2009 ▶).

Experimental

Crystal data

C12H11N3O2 M = 229.24 Monoclinic, a = 16.091 (3) Å b = 4.7350 (9) Å c = 15.776 (3) Å β = 114.26 (3)° V = 1095.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 283 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.988, T max = 0.989 6629 measured reflections 2324 independent reflections 1550 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.107 S = 1.05 2324 reflections 155 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680901174X/su2105sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901174X/su2105Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3O2F(000) = 480
Mr = 229.24Dx = 1.389 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 628 reflections
a = 16.091 (3) Åθ = 2.5–15°
b = 4.7350 (9) ŵ = 0.10 mm1
c = 15.776 (3) ÅT = 283 K
β = 114.26 (3)°Block, yellow
V = 1095.8 (4) Å30.20 × 0.10 × 0.10 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2324 independent reflections
Radiation source: fine-focus sealed tube1550 reflections with I > 2σ(I)
graphiteRint = 0.015
φ and ω scansθmax = 27.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→20
Tmin = 0.988, Tmax = 0.989k = −6→4
6629 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0607P)2] where P = (Fo2 + 2Fc2)/3
2324 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.23742 (8)0.2085 (3)0.15396 (8)0.0367 (3)
C20.24256 (9)0.1120 (3)0.23930 (9)0.0441 (3)
C30.30716 (10)−0.0898 (3)0.29109 (10)0.0538 (4)
H3C0.3094−0.14970.34810.065*
C40.36618 (10)−0.1978 (3)0.25859 (10)0.0530 (4)
H4A0.4089−0.33070.29390.064*
C50.36419 (8)−0.1126 (3)0.17185 (9)0.0435 (3)
C60.42499 (10)−0.2280 (3)0.13721 (11)0.0572 (4)
H6A0.4674−0.36220.17220.069*
C70.42258 (10)−0.1462 (4)0.05361 (12)0.0623 (4)
H7A0.4634−0.22310.03200.075*
C80.35881 (11)0.0531 (3)0.00052 (11)0.0571 (4)
H8A0.35720.1088−0.05670.068*
C90.29852 (9)0.1678 (3)0.03161 (9)0.0477 (4)
H9A0.25600.2989−0.00530.057*
C100.29938 (8)0.0915 (3)0.11853 (9)0.0377 (3)
C110.17325 (8)0.4299 (3)0.10430 (9)0.0383 (3)
H110.17770.51850.05370.046*
C12−0.01922 (9)0.7854 (3)0.10281 (9)0.0405 (3)
N10.11062 (7)0.5029 (2)0.13008 (7)0.0419 (3)
N20.05492 (7)0.7251 (2)0.08591 (7)0.0447 (3)
H20.06710.82660.04730.054*
N3−0.04085 (8)0.6020 (3)0.15536 (8)0.0551 (4)
H3A−0.08730.63330.16780.066*
H3B−0.00830.45300.17650.066*
O10.18694 (7)0.2086 (2)0.27791 (7)0.0616 (3)
H10.15210.32720.24360.092*
O2−0.06341 (7)1.00232 (19)0.07058 (6)0.0510 (3)
U11U22U33U12U13U23
C10.0325 (6)0.0356 (7)0.0400 (7)−0.0004 (5)0.0127 (6)0.0012 (6)
C20.0426 (7)0.0456 (8)0.0445 (7)0.0005 (6)0.0183 (6)0.0036 (6)
C30.0547 (9)0.0555 (9)0.0458 (8)0.0047 (7)0.0151 (7)0.0146 (7)
C40.0425 (8)0.0467 (9)0.0575 (9)0.0073 (7)0.0080 (7)0.0094 (7)
C50.0317 (7)0.0378 (8)0.0543 (8)−0.0019 (6)0.0108 (6)−0.0042 (6)
C60.0386 (8)0.0501 (9)0.0765 (11)0.0066 (7)0.0172 (7)−0.0063 (8)
C70.0479 (8)0.0625 (11)0.0841 (12)0.0004 (8)0.0347 (8)−0.0223 (9)
C80.0560 (9)0.0636 (10)0.0593 (9)−0.0035 (8)0.0313 (8)−0.0097 (8)
C90.0436 (8)0.0519 (9)0.0478 (8)0.0035 (6)0.0191 (7)−0.0028 (6)
C100.0313 (6)0.0356 (7)0.0438 (7)−0.0040 (5)0.0131 (6)−0.0052 (6)
C110.0371 (7)0.0381 (8)0.0389 (7)−0.0001 (6)0.0150 (6)0.0004 (6)
C120.0416 (7)0.0368 (8)0.0434 (7)0.0014 (6)0.0177 (6)−0.0071 (6)
N10.0385 (6)0.0396 (6)0.0480 (6)0.0057 (5)0.0182 (5)0.0030 (5)
N20.0428 (6)0.0401 (7)0.0560 (7)0.0097 (5)0.0250 (6)0.0108 (5)
N30.0579 (8)0.0484 (8)0.0733 (8)0.0123 (6)0.0414 (7)0.0112 (6)
O10.0642 (7)0.0759 (8)0.0575 (6)0.0184 (6)0.0378 (6)0.0190 (5)
O20.0525 (6)0.0432 (6)0.0616 (6)0.0139 (5)0.0280 (5)0.0039 (5)
C1—C21.3916 (17)C8—C91.3667 (18)
C1—C101.4390 (16)C8—H8A0.9300
C1—C111.4540 (17)C9—C101.4126 (18)
C2—O11.3525 (15)C9—H9A0.9300
C2—C31.4013 (19)C11—N11.2798 (15)
C3—C41.352 (2)C11—H110.9300
C3—H3C0.9300C12—O21.2336 (14)
C4—C51.414 (2)C12—N31.3417 (16)
C4—H4A0.9300C12—N21.3554 (15)
C5—C61.4120 (19)N1—N21.3719 (14)
C5—C101.4172 (18)N2—H20.8600
C6—C71.360 (2)N3—H3A0.8600
C6—H6A0.9300N3—H3B0.8600
C7—C81.392 (2)O1—H10.8200
C7—H7A0.9300
C2—C1—C10118.31 (12)C9—C8—H8A119.7
C2—C1—C11120.31 (11)C7—C8—H8A119.7
C10—C1—C11121.34 (11)C8—C9—C10121.44 (14)
O1—C2—C1122.52 (12)C8—C9—H9A119.3
O1—C2—C3115.95 (12)C10—C9—H9A119.3
C1—C2—C3121.53 (12)C9—C10—C5117.51 (11)
C4—C3—C2120.36 (13)C9—C10—C1123.13 (12)
C4—C3—H3C119.8C5—C10—C1119.36 (11)
C2—C3—H3C119.8N1—C11—C1120.08 (11)
C3—C4—C5121.27 (13)N1—C11—H11120.0
C3—C4—H4A119.4C1—C11—H11120.0
C5—C4—H4A119.4O2—C12—N3122.80 (12)
C6—C5—C4121.35 (14)O2—C12—N2119.96 (12)
C6—C5—C10119.48 (13)N3—C12—N2117.24 (12)
C4—C5—C10119.17 (12)C11—N1—N2118.76 (10)
C7—C6—C5121.13 (15)C12—N2—N1120.39 (10)
C7—C6—H6A119.4C12—N2—H2119.8
C5—C6—H6A119.4N1—N2—H2119.8
C6—C7—C8119.79 (13)C12—N3—H3A120.0
C6—C7—H7A120.1C12—N3—H3B120.0
C8—C7—H7A120.1H3A—N3—H3B120.0
C9—C8—C7120.64 (14)C2—O1—H1109.5
C10—C1—C2—O1−179.71 (12)C8—C9—C10—C1179.65 (12)
C11—C1—C2—O12.7 (2)C6—C5—C10—C90.63 (18)
C10—C1—C2—C31.2 (2)C4—C5—C10—C9−179.00 (12)
C11—C1—C2—C3−176.41 (13)C6—C5—C10—C1179.93 (12)
O1—C2—C3—C4−179.60 (13)C4—C5—C10—C10.30 (18)
C1—C2—C3—C4−0.4 (2)C2—C1—C10—C9178.15 (12)
C2—C3—C4—C5−0.4 (2)C11—C1—C10—C9−4.27 (19)
C3—C4—C5—C6−179.15 (13)C2—C1—C10—C5−1.10 (18)
C3—C4—C5—C100.5 (2)C11—C1—C10—C5176.48 (11)
C4—C5—C6—C7179.75 (13)C2—C1—C11—N1−12.17 (19)
C10—C5—C6—C70.1 (2)C10—C1—C11—N1170.30 (11)
C5—C6—C7—C8−0.5 (2)C1—C11—N1—N2175.68 (11)
C6—C7—C8—C90.0 (2)O2—C12—N2—N1172.35 (11)
C7—C8—C9—C100.8 (2)N3—C12—N2—N1−7.35 (18)
C8—C9—C10—C5−1.1 (2)C11—N1—N2—C12171.46 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.832.5563 (15)146
N2—H2···O2i0.862.012.8385 (15)163
N3—H3A···O1ii0.862.142.9871 (15)171
N3—H3B···O2iii0.862.633.0957 (16)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.832.5563 (15)146
N2—H2⋯O2i0.862.012.8385 (15)163
N3—H3A⋯O1ii0.862.142.9871 (15)171
N3—H3B⋯O2iii0.862.633.0957 (16)115

Symmetry codes: (i) ; (ii) ; (iii) .

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