Literature DB >> 21589359

Methyl 3-[(E)-(2-hy-droxy-1-naphth-yl)methyl-idene]carbazate.

Liang-Quan Sheng1, Hua-Jie Xu, Na-Na Du, Xue-Yue Jiang.   

Abstract

The title compound, C(13)H(12)N(2)O(3), has an E configuration with respect to the C=N bond: the conformation is stabilized by an intramolecular O-H⋯N hydrogen bond. In the crystal, an N-H⋯O interaction links the molecules into a C(4) chain along [100].

Entities:  

Year:  2010        PMID: 21589359      PMCID: PMC3011666          DOI: 10.1107/S1600536810044041

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the naphthalene group as a fluoro­phore, see: Li et al. (2010 ▶); Iijima et al. (2010 ▶). For a related structure and bond length, see: Xu et al. (2009 ▶). For the synthetic method, see: Zhang et al. (1999 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For applications of Schiff basemetal complexes, see: Cozzi (2004 ▶).

Experimental

Crystal data

C13H12N2O3 M = 244.25 Orthorhombic, a = 5.1754 (3) Å b = 9.2787 (5) Å c = 23.6766 (12) Å V = 1136.97 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.40 × 0.36 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.960, T max = 0.970 6329 measured reflections 1562 independent reflections 1120 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.058 S = 1.09 1562 reflections 165 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810044041/bx2318sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810044041/bx2318Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N2O3F(000) = 512
Mr = 244.25Dx = 1.427 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2986 reflections
a = 5.1754 (3) Åθ = 3.4–29.1°
b = 9.2787 (5) ŵ = 0.10 mm1
c = 23.6766 (12) ÅT = 291 K
V = 1136.97 (11) Å3Block, yellow
Z = 40.40 × 0.36 × 0.30 mm
Oxford Diffraction Gemini S Ultra diffractometer1562 independent reflections
Radiation source: Enhance (Mo) X-ray Source1120 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 15.9149 pixels mm-1θmax = 27.9°, θmin = 3.4°
ω scansh = −6→6
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −12→12
Tmin = 0.960, Tmax = 0.970l = −30→29
6329 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.058H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0239P)2] where P = (Fo2 + 2Fc2)/3
1562 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.13 e Å3
Experimental. Absorption correction: CrysAlisPro,(Oxford Diffraction 2009). Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET) (compiled Apr 28 2010,14:27:37) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7358 (4)0.2360 (2)0.64442 (8)0.0492 (5)
H1A0.83420.28510.67110.059*
C20.7869 (4)0.2539 (2)0.58880 (8)0.0538 (5)
H2A0.91750.31630.57740.065*
C30.6428 (4)0.1785 (2)0.54858 (8)0.0529 (5)
H30.68000.19010.51040.064*
C40.4483 (4)0.0881 (2)0.56460 (7)0.0460 (5)
H40.35390.03970.53710.055*
C50.3871 (3)0.06633 (18)0.62220 (7)0.0363 (4)
C60.5348 (3)0.14347 (18)0.66256 (7)0.0402 (4)
C70.4774 (4)0.1259 (2)0.72052 (7)0.0478 (5)
H70.57100.17800.74710.057*
C80.2899 (4)0.0355 (2)0.73821 (7)0.0476 (5)
H80.25640.02560.77660.057*
C90.1459 (3)−0.04352 (19)0.69896 (7)0.0406 (4)
C100.1867 (3)−0.02866 (18)0.64118 (7)0.0354 (4)
C110.0239 (3)−0.10114 (18)0.60072 (6)0.0396 (4)
H110.0471−0.08130.56260.047*
C12−0.4938 (4)−0.33819 (19)0.57803 (6)0.0397 (4)
C13−0.7307 (4)−0.4828 (2)0.64025 (8)0.0554 (5)
H13A−0.8917−0.43950.62940.083*
H13B−0.7372−0.50870.67950.083*
H13C−0.7014−0.56770.61790.083*
N1−0.1522 (3)−0.19204 (16)0.61512 (6)0.0410 (4)
N2−0.2962 (3)−0.24594 (17)0.57083 (5)0.0455 (4)
H2−0.2578−0.21930.53710.055*
O1−0.0360 (3)−0.13205 (14)0.72081 (5)0.0553 (4)
H1−0.1165−0.17050.69510.083*
O2−0.6293 (2)−0.37715 (15)0.53872 (5)0.0548 (4)
O3−0.5234 (2)−0.38178 (12)0.63113 (4)0.0462 (3)
U11U22U33U12U13U23
C10.0448 (11)0.0476 (11)0.0551 (11)−0.0007 (12)−0.0054 (9)−0.0056 (10)
C20.0448 (11)0.0570 (12)0.0597 (12)−0.0065 (12)0.0032 (11)0.0074 (11)
C30.0487 (12)0.0657 (14)0.0443 (10)−0.0078 (12)−0.0017 (10)0.0070 (10)
C40.0413 (11)0.0562 (12)0.0404 (9)−0.0019 (11)−0.0027 (9)0.0043 (9)
C50.0347 (9)0.0353 (9)0.0388 (9)0.0067 (9)−0.0037 (8)0.0020 (8)
C60.0385 (10)0.0368 (10)0.0453 (9)0.0044 (11)−0.0051 (9)0.0009 (9)
C70.0546 (11)0.0499 (11)0.0390 (9)−0.0025 (13)−0.0065 (10)−0.0068 (9)
C80.0570 (12)0.0542 (12)0.0315 (9)0.0008 (12)−0.0029 (9)−0.0013 (9)
C90.0406 (10)0.0410 (10)0.0404 (10)0.0028 (10)−0.0001 (9)0.0058 (9)
C100.0359 (10)0.0358 (9)0.0346 (9)0.0044 (10)−0.0040 (8)0.0002 (8)
C110.0401 (10)0.0427 (10)0.0359 (9)0.0007 (12)0.0000 (8)0.0025 (8)
C120.0427 (10)0.0428 (10)0.0336 (9)0.0023 (11)−0.0029 (9)−0.0007 (8)
C130.0492 (12)0.0622 (12)0.0547 (11)−0.0121 (13)−0.0041 (10)0.0117 (10)
N10.0422 (9)0.0446 (9)0.0362 (7)−0.0021 (9)−0.0076 (7)−0.0017 (7)
N20.0503 (9)0.0556 (9)0.0305 (7)−0.0110 (10)−0.0022 (7)0.0015 (7)
O10.0580 (8)0.0671 (9)0.0406 (6)−0.0135 (9)0.0007 (7)0.0059 (7)
O20.0601 (8)0.0684 (9)0.0360 (6)−0.0118 (9)−0.0126 (6)0.0004 (7)
O30.0506 (7)0.0528 (7)0.0352 (6)−0.0126 (8)−0.0053 (6)0.0075 (6)
C1—C21.353 (2)C9—O11.3523 (19)
C1—C61.416 (2)C9—C101.391 (2)
C1—H1A0.9300C10—C111.442 (2)
C2—C31.397 (3)C11—N11.288 (2)
C2—H2A0.9300C11—H110.9300
C3—C41.364 (2)C12—O21.2203 (19)
C3—H30.9300C12—O31.3294 (19)
C4—C51.414 (2)C12—N21.344 (2)
C4—H40.9300C13—O31.441 (2)
C5—C61.418 (2)C13—H13A0.9600
C5—C101.433 (2)C13—H13B0.9600
C6—C71.413 (2)C13—H13C0.9600
C7—C81.350 (2)N1—N21.3804 (18)
C7—H70.9300N2—H20.8600
C8—C91.399 (2)O1—H10.8200
C8—H80.9300
C2—C1—C6120.88 (18)O1—C9—C10122.83 (16)
C2—C1—H1A119.6O1—C9—C8115.79 (15)
C6—C1—H1A119.6C10—C9—C8121.38 (17)
C1—C2—C3119.82 (19)C9—C10—C5118.63 (16)
C1—C2—H2A120.1C9—C10—C11121.23 (16)
C3—C2—H2A120.1C5—C10—C11120.08 (14)
C4—C3—C2120.82 (17)N1—C11—C10122.89 (14)
C4—C3—H3119.6N1—C11—H11118.6
C2—C3—H3119.6C10—C11—H11118.6
C3—C4—C5121.39 (17)O2—C12—O3124.41 (18)
C3—C4—H4119.3O2—C12—N2121.93 (15)
C5—C4—H4119.3O3—C12—N2113.66 (15)
C4—C5—C6117.21 (16)O3—C13—H13A109.5
C4—C5—C10123.50 (16)O3—C13—H13B109.5
C6—C5—C10119.29 (15)H13A—C13—H13B109.5
C7—C6—C1121.25 (17)O3—C13—H13C109.5
C7—C6—C5118.88 (17)H13A—C13—H13C109.5
C1—C6—C5119.87 (15)H13B—C13—H13C109.5
C8—C7—C6121.60 (17)C11—N1—N2114.73 (13)
C8—C7—H7119.2C12—N2—N1123.02 (13)
C6—C7—H7119.2C12—N2—H2118.5
C7—C8—C9120.18 (16)N1—N2—H2118.5
C7—C8—H8119.9C9—O1—H1109.5
C9—C8—H8119.9C12—O3—C13115.17 (14)
C6—C1—C2—C3−1.1 (3)C5—C10—C9—O1−179.05 (14)
C1—C2—C3—C40.9 (3)C5—C10—C9—C82.1 (2)
C5—C4—C3—C2−0.6 (3)C11—C10—C9—O14.0 (3)
C6—C5—C4—C30.6 (3)C11—C10—C9—C8−174.82 (16)
C10—C5—C4—C3−179.27 (16)C9—C10—C5—C4178.98 (18)
C2—C1—C6—C7−178.94 (18)C9—C10—C5—C6−0.9 (2)
C2—C1—C6—C51.1 (3)C11—C10—C5—C4−4.0 (2)
C4—C5—C6—C7179.26 (17)C11—C10—C5—C6176.13 (15)
C10—C5—C6—C7−0.9 (2)C9—C10—C11—N1−6.0 (2)
C4—C5—C6—C1−0.8 (2)C5—C10—C11—N1177.12 (14)
C10—C5—C6—C1179.04 (15)N2—N1—C11—C10177.35 (15)
C1—C6—C7—C8−178.46 (16)N1—N2—C12—O2175.09 (16)
C5—C6—C7—C81.5 (3)N1—N2—C12—O3−5.3 (2)
C9—C8—C7—C6−0.2 (3)C12—N2—N1—C11−177.71 (15)
C7—C8—C9—O1179.49 (16)C13—O3—C12—O20.6 (3)
C7—C8—C9—C10−1.6 (3)C13—O3—C12—N2−178.95 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.912.6332 (18)146
N2—H2···O2i0.862.112.9626 (18)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.912.6332 (18)146
N2—H2⋯O2i0.862.112.9626 (18)170

Symmetry code: (i) .

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