Literature DB >> 22199705

(E)-2-[(2-Chloro-benzyl-idene)amino]-isoindoline-1,3-dione.

Hua-Jie Xu1, Xue-Yue Jiang, Liang-Quan Sheng, Zhao-Di Liu.   

Abstract

The title compound, C(15)H(9)ClN(2)O(2), adopts an E configuration about the C=N double bond. The mean plane of the isoindoline ring system [maximum deviation = 0.011 (2) Å] is inclined to the chloro-benzene ring by 22.62 (8)°. In the crystal, mol-ecules are connected by C-H⋯O hydrogen bonds, forming chains that propagate along [010].

Entities:  

Year:  2011        PMID: 22199705      PMCID: PMC3238852          DOI: 10.1107/S1600536811044898

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of amidrazones, see: Neilson et al. (1970 ▶); Lee et al. (1998 ▶); Radwan et al. (2007 ▶); Xu et al. (2009 ▶); Liu et al. (2011 ▶).

Experimental

Crystal data

C15H9ClN2O2 M = 284.69 Monoclinic, a = 12.991 (8) Å b = 4.808 (3) Å c = 23.757 (11) Å β = 120.60 (2)° V = 1277.2 (13) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.942, T max = 0.971 6727 measured reflections 2628 independent reflections 2017 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.104 S = 1.10 2628 reflections 181 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044898/su2334sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044898/su2334Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044898/su2334Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H9ClN2O2F(000) = 584
Mr = 284.69Dx = 1.481 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2406 reflections
a = 12.991 (8) Åθ = 3.1–27.1°
b = 4.808 (3) ŵ = 0.30 mm1
c = 23.757 (11) ÅT = 293 K
β = 120.60 (2)°Prism, yellow
V = 1277.2 (13) Å30.20 × 0.20 × 0.10 mm
Z = 4
Siemens SMART CCD area-detector diffractometer2628 independent reflections
Radiation source: fine-focus sealed tube2017 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 26.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.942, Tmax = 0.971k = −6→5
6727 measured reflectionsl = −29→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0444P)2 + 0.2726P] where P = (Fo2 + 2Fc2)/3
2628 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.46943 (4)0.33401 (14)0.57225 (3)0.0719 (2)
O10.37871 (11)0.9151 (3)0.67721 (7)0.0559 (5)
O20.04114 (11)0.5317 (3)0.66062 (6)0.0516 (4)
N10.18301 (12)0.4921 (3)0.60576 (7)0.0435 (5)
N20.20315 (12)0.6854 (3)0.65344 (7)0.0400 (5)
C10.23630 (16)0.2700 (4)0.53596 (8)0.0417 (6)
C20.32867 (16)0.1841 (4)0.52658 (8)0.0465 (6)
C30.3118 (2)−0.0195 (4)0.48207 (10)0.0578 (8)
C40.2015 (2)−0.1385 (4)0.44524 (10)0.0598 (8)
C50.1073 (2)−0.0545 (4)0.45248 (9)0.0577 (7)
C60.12498 (17)0.1482 (4)0.49709 (9)0.0494 (6)
C70.25579 (16)0.4778 (4)0.58538 (9)0.0463 (6)
C80.29761 (14)0.8758 (4)0.68703 (8)0.0400 (5)
C90.27449 (14)1.0096 (3)0.73570 (8)0.0382 (5)
C100.17280 (14)0.8941 (3)0.73080 (8)0.0371 (5)
C110.12550 (15)0.6817 (4)0.67897 (8)0.0386 (5)
C120.13187 (16)0.9757 (4)0.77164 (8)0.0427 (5)
C130.19584 (17)1.1782 (4)0.81725 (9)0.0496 (6)
C140.29695 (17)1.2934 (4)0.82189 (9)0.0536 (6)
C150.33895 (16)1.2110 (4)0.78112 (9)0.0484 (6)
H30.37510−0.076100.477000.0690*
H40.18990−0.276700.415200.0720*
H50.03230−0.135100.427200.0690*
H60.061000.205400.501400.0590*
H70.320900.597900.601600.0560*
H120.063700.897100.768500.0510*
H130.170401.238000.845400.0600*
H140.338201.430100.853100.0640*
H150.407401.288600.784400.0580*
U11U22U33U12U13U23
Cl10.0515 (3)0.0882 (5)0.0847 (4)0.0060 (3)0.0411 (3)−0.0103 (3)
O10.0474 (7)0.0648 (9)0.0705 (9)−0.0068 (6)0.0410 (7)−0.0087 (7)
O20.0510 (7)0.0584 (8)0.0576 (8)−0.0154 (6)0.0365 (6)−0.0163 (6)
N10.0482 (8)0.0460 (9)0.0451 (8)0.0008 (7)0.0301 (7)−0.0061 (7)
N20.0422 (8)0.0420 (8)0.0454 (8)−0.0015 (6)0.0293 (7)−0.0056 (6)
C10.0516 (10)0.0414 (10)0.0415 (9)0.0053 (8)0.0305 (8)0.0038 (8)
C20.0521 (10)0.0507 (11)0.0462 (10)0.0107 (9)0.0319 (9)0.0065 (9)
C30.0763 (14)0.0585 (13)0.0582 (12)0.0177 (11)0.0485 (11)0.0051 (10)
C40.0942 (16)0.0474 (12)0.0489 (11)0.0047 (11)0.0445 (12)−0.0038 (9)
C50.0731 (13)0.0559 (13)0.0479 (11)−0.0055 (11)0.0335 (10)−0.0033 (9)
C60.0555 (11)0.0506 (11)0.0502 (10)0.0009 (9)0.0329 (9)−0.0018 (9)
C70.0483 (10)0.0479 (11)0.0527 (10)−0.0014 (8)0.0329 (9)−0.0061 (9)
C80.0377 (8)0.0412 (10)0.0448 (9)0.0044 (7)0.0236 (8)0.0034 (8)
C90.0358 (8)0.0381 (9)0.0418 (9)0.0037 (7)0.0205 (7)0.0018 (7)
C100.0379 (8)0.0367 (9)0.0389 (8)0.0025 (7)0.0211 (7)0.0001 (7)
C110.0394 (9)0.0411 (10)0.0423 (9)0.0029 (8)0.0258 (7)0.0007 (8)
C120.0464 (9)0.0444 (10)0.0459 (9)−0.0001 (8)0.0297 (8)−0.0024 (8)
C130.0588 (11)0.0515 (11)0.0453 (10)0.0024 (9)0.0314 (9)−0.0060 (9)
C140.0556 (11)0.0521 (12)0.0464 (10)−0.0036 (9)0.0212 (9)−0.0126 (9)
C150.0396 (9)0.0494 (11)0.0542 (11)−0.0034 (8)0.0224 (8)−0.0031 (9)
Cl1—C21.738 (2)C9—C151.372 (3)
O1—C81.204 (3)C10—C111.472 (3)
O2—C111.194 (3)C10—C121.380 (3)
N1—N21.383 (2)C12—C131.377 (3)
N1—C71.265 (3)C13—C141.377 (3)
N2—C81.409 (3)C14—C151.390 (3)
N2—C111.417 (3)C3—H30.9300
C1—C21.390 (3)C4—H40.9300
C1—C61.388 (3)C5—H50.9300
C1—C71.462 (3)C6—H60.9300
C2—C31.374 (3)C7—H70.9300
C3—C41.367 (4)C12—H120.9300
C4—C51.380 (4)C13—H130.9300
C5—C61.370 (3)C14—H140.9300
C8—C91.481 (3)C15—H150.9300
C9—C101.382 (3)
N2—N1—C7118.91 (17)O2—C11—C10129.75 (19)
N1—N2—C8130.37 (17)N2—C11—C10105.33 (16)
N1—N2—C11117.57 (15)C10—C12—C13117.4 (2)
C8—N2—C11111.74 (15)C12—C13—C14121.1 (2)
C2—C1—C6117.38 (18)C13—C14—C15121.77 (18)
C2—C1—C7121.40 (19)C9—C15—C14116.8 (2)
C6—C1—C7121.2 (2)C2—C3—H3120.00
Cl1—C2—C1119.77 (14)C4—C3—H3120.00
Cl1—C2—C3118.74 (19)C3—C4—H4120.00
C1—C2—C3121.5 (2)C5—C4—H4120.00
C2—C3—C4119.7 (2)C4—C5—H5120.00
C3—C4—C5120.3 (2)C6—C5—H5120.00
C4—C5—C6119.6 (2)C1—C6—H6119.00
C1—C6—C5121.5 (2)C5—C6—H6119.00
N1—C7—C1119.14 (19)N1—C7—H7120.00
O1—C8—N2126.02 (17)C1—C7—H7120.00
O1—C8—C9128.90 (18)C10—C12—H12121.00
N2—C8—C9105.08 (16)C13—C12—H12121.00
C8—C9—C10108.94 (15)C12—C13—H13119.00
C8—C9—C15129.43 (19)C14—C13—H13119.00
C10—C9—C15121.62 (18)C13—C14—H14119.00
C9—C10—C11108.86 (17)C15—C14—H14119.00
C9—C10—C12121.37 (16)C9—C15—H15122.00
C11—C10—C12129.75 (18)C14—C15—H15122.00
O2—C11—N2124.92 (17)
C7—N1—N2—C8−2.3 (3)C3—C4—C5—C6−0.3 (3)
C7—N1—N2—C11−175.13 (16)C4—C5—C6—C1−0.7 (3)
N2—N1—C7—C1178.75 (15)O1—C8—C9—C10−178.23 (19)
N1—N2—C8—O14.2 (3)O1—C8—C9—C150.4 (3)
N1—N2—C8—C9−175.51 (16)N2—C8—C9—C101.44 (19)
C11—N2—C8—O1177.36 (18)N2—C8—C9—C15−179.98 (18)
C11—N2—C8—C9−2.33 (19)C8—C9—C10—C11−0.09 (19)
N1—N2—C11—O2−3.1 (3)C8—C9—C10—C12178.45 (16)
N1—N2—C11—C10176.43 (14)C15—C9—C10—C11−178.80 (16)
C8—N2—C11—O2−177.28 (18)C15—C9—C10—C12−0.3 (3)
C8—N2—C11—C102.29 (19)C8—C9—C15—C14−178.50 (17)
C6—C1—C2—Cl1178.49 (14)C10—C9—C15—C14−0.1 (3)
C6—C1—C2—C3−2.0 (3)C9—C10—C11—O2178.24 (19)
C7—C1—C2—Cl1−2.3 (2)C9—C10—C11—N2−1.30 (19)
C7—C1—C2—C3177.25 (18)C12—C10—C11—O2−0.1 (3)
C2—C1—C6—C51.8 (3)C12—C10—C11—N2−179.67 (17)
C7—C1—C6—C5−177.41 (18)C9—C10—C12—C130.4 (3)
C2—C1—C7—N1−159.54 (18)C11—C10—C12—C13178.61 (18)
C6—C1—C7—N119.7 (3)C10—C12—C13—C14−0.2 (3)
Cl1—C2—C3—C4−179.45 (16)C12—C13—C14—C15−0.1 (3)
C1—C2—C3—C41.0 (3)C13—C14—C15—C90.3 (3)
C2—C3—C4—C50.2 (3)
D—H···AD—HH···AD···AD—H···A
C15—H15···O1i0.932.523.421 (4)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15⋯O1i0.932.523.421 (4)163

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The chemistry of amidrazones.

Authors:  D G Neilson; R Roger; J W Heatlie; L R Newlands
Journal:  Chem Rev       Date:  1970-02       Impact factor: 60.622

3.  (E)-2-Hydroxy-naphthalene-1-carb-al-de-hyde semicarbazone.

Authors:  Hua-Jie Xu; Na-Na Du; Xue-Yue Jiang; Liang-Quan Sheng; Yu-Peng Tian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

4.  Structural modification of an orally active thrombin inhibitor, LB30057: replacement of the D-pocket-binding naphthyl moiety.

Authors:  K Lee; S Y Hwang; S Hong; C Y Hong; C S Lee; Y Shin; S Kim; M Yun; Y J Yoo; M Kang; Y S Oh
Journal:  Bioorg Med Chem       Date:  1998-06       Impact factor: 3.641

  4 in total

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