| Literature DB >> 21587837 |
Liang-Quan Sheng1, Hua-Jie Xu, Na-Na Du, Xue-Yue Jiang.
Abstract
The title compound, C(14)H(11)N(3)O(3), adopts an E or trans configuration with respect to the C=N bond. In the mol-ecule there is an intra-molecular O-H⋯N hydrogen bond involving the hy-droxy substituent at the 2-positon of the naphthalene ring and the adjacent methyl-ene-amino N atom. The mol-ecule is roughly planar, the dihedral angle between the naphthalene and imidazolidine-2,4-dione mean planes being 8.4 (1)°. In the crystal, pairs of N-H⋯O hydrogen bonds link mol-ecules into inversion dimers. These dimers are futher linked via C-H⋯O inter-actions, forming a three-dimensional network.Entities:
Year: 2010 PMID: 21587837 PMCID: PMC3006989 DOI: 10.1107/S1600536810020118
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H11N3O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1596 reflections |
| θ = 3.1–29.0° | |
| µ = 0.11 mm−1 | |
| β = 96.773 (5)° | Block, yellow |
| 0.40 × 0.30 × 0.30 mm | |
| Oxford Diffraction Gemini S Ultra diffractometer | 2136 independent reflections |
| Radiation source: fine-focus sealed tube | 1053 reflections with |
| graphite | |
| Detector resolution: 15.9149 pixels mm-1 | θmax = 25.0°, θmin = 3.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4288 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2136 reflections | (Δ/σ)max = 0.002 |
| 186 parameters | Δρmax = 0.11 e Å−3 |
| 0 restraints | Δρmin = −0.13 e Å−3 |
| Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm CrysAlisPro (Oxford Diffraction, 2009). |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.59888 (11) | 0.25607 (18) | 0.48396 (8) | 0.0491 (5) | |
| O2 | 0.40014 (13) | 0.1526 (2) | 0.68676 (8) | 0.0710 (7) | |
| O3 | 0.80499 (13) | 0.8397 (2) | 0.49453 (8) | 0.0645 (6) | |
| N1 | 0.67397 (13) | 0.6177 (2) | 0.57838 (9) | 0.0420 (6) | |
| N2 | 0.59925 (13) | 0.4517 (2) | 0.59460 (9) | 0.0425 (6) | |
| N3 | 0.48790 (15) | 0.1552 (3) | 0.57835 (10) | 0.0454 (7) | |
| C1 | 0.79653 (19) | 1.2321 (3) | 0.80751 (14) | 0.0665 (10) | |
| C2 | 0.8627 (2) | 1.4184 (4) | 0.79511 (16) | 0.0705 (10) | |
| C3 | 0.90328 (19) | 1.4454 (3) | 0.72772 (16) | 0.0626 (9) | |
| C4 | 0.87808 (17) | 1.2884 (3) | 0.66974 (14) | 0.0504 (9) | |
| C5 | 0.80840 (16) | 1.1006 (3) | 0.68128 (12) | 0.0434 (8) | |
| C6 | 0.77027 (17) | 1.0762 (3) | 0.75298 (13) | 0.0549 (9) | |
| C7 | 0.91986 (18) | 1.3147 (3) | 0.59955 (15) | 0.0606 (10) | |
| C8 | 0.89532 (17) | 1.1653 (4) | 0.54362 (13) | 0.0589 (9) | |
| C9 | 0.82579 (17) | 0.9788 (3) | 0.55419 (13) | 0.0495 (9) | |
| C10 | 0.78023 (16) | 0.9449 (3) | 0.62117 (12) | 0.0413 (8) | |
| C11 | 0.70303 (15) | 0.7611 (3) | 0.63076 (11) | 0.0436 (7) | |
| C12 | 0.56648 (16) | 0.2867 (3) | 0.54520 (12) | 0.0398 (8) | |
| C13 | 0.46509 (18) | 0.2336 (3) | 0.64613 (12) | 0.0503 (9) | |
| C14 | 0.53798 (18) | 0.4406 (3) | 0.66051 (11) | 0.0496 (8) | |
| H1 | 0.76960 | 1.21310 | 0.85380 | 0.0800* | |
| H2 | 0.87910 | 1.52400 | 0.83260 | 0.0850* | |
| H3 | 0.94840 | 1.56920 | 0.71970 | 0.0750* | |
| H3N | 0.4590 (16) | 0.028 (3) | 0.5590 (11) | 0.065 (7)* | |
| H4 | 0.76770 | 0.73180 | 0.50630 | 0.0970* | |
| H6 | 0.72670 | 0.95210 | 0.76300 | 0.0660* | |
| H7 | 0.96540 | 1.43790 | 0.59150 | 0.0730* | |
| H8 | 0.92460 | 1.18630 | 0.49810 | 0.0710* | |
| H11 | 0.67310 | 0.74520 | 0.67630 | 0.0520* | |
| H14A | 0.48920 | 0.57040 | 0.66440 | 0.0600* | |
| H14B | 0.59220 | 0.42690 | 0.70580 | 0.0600* |
| O1 | 0.0538 (10) | 0.0529 (8) | 0.0415 (10) | −0.0044 (7) | 0.0094 (8) | −0.0084 (7) |
| O2 | 0.0901 (13) | 0.0776 (10) | 0.0488 (11) | −0.0257 (9) | 0.0233 (9) | 0.0057 (9) |
| O3 | 0.0725 (12) | 0.0686 (10) | 0.0544 (11) | −0.0094 (8) | 0.0156 (9) | −0.0054 (9) |
| N1 | 0.0401 (10) | 0.0373 (9) | 0.0473 (12) | −0.0016 (8) | 0.0000 (9) | −0.0017 (9) |
| N2 | 0.0467 (11) | 0.0387 (10) | 0.0424 (12) | −0.0071 (9) | 0.0067 (9) | −0.0046 (9) |
| N3 | 0.0522 (12) | 0.0420 (11) | 0.0421 (13) | −0.0091 (9) | 0.0061 (10) | −0.0013 (10) |
| C1 | 0.0649 (16) | 0.0670 (16) | 0.0662 (18) | −0.0015 (14) | 0.0014 (14) | −0.0187 (14) |
| C2 | 0.0648 (18) | 0.0583 (16) | 0.083 (2) | 0.0033 (13) | −0.0137 (16) | −0.0216 (15) |
| C3 | 0.0477 (15) | 0.0391 (13) | 0.095 (2) | −0.0026 (11) | −0.0162 (15) | −0.0068 (15) |
| C4 | 0.0383 (14) | 0.0375 (13) | 0.0718 (18) | 0.0023 (11) | −0.0083 (12) | 0.0001 (13) |
| C5 | 0.0343 (12) | 0.0361 (12) | 0.0576 (16) | 0.0059 (10) | −0.0042 (11) | −0.0009 (11) |
| C6 | 0.0523 (15) | 0.0508 (14) | 0.0602 (17) | −0.0031 (11) | 0.0014 (13) | −0.0107 (13) |
| C7 | 0.0455 (15) | 0.0441 (14) | 0.090 (2) | −0.0063 (11) | −0.0017 (15) | 0.0105 (14) |
| C8 | 0.0478 (14) | 0.0590 (15) | 0.0704 (18) | −0.0027 (12) | 0.0097 (13) | 0.0143 (14) |
| C9 | 0.0432 (14) | 0.0457 (13) | 0.0586 (17) | 0.0027 (11) | 0.0013 (12) | −0.0004 (12) |
| C10 | 0.0328 (12) | 0.0372 (12) | 0.0532 (15) | −0.0012 (10) | 0.0017 (11) | 0.0029 (11) |
| C11 | 0.0457 (13) | 0.0405 (11) | 0.0441 (14) | 0.0024 (11) | 0.0037 (11) | −0.0020 (11) |
| C12 | 0.0377 (13) | 0.0386 (13) | 0.0417 (14) | 0.0016 (10) | −0.0010 (11) | 0.0013 (11) |
| C13 | 0.0601 (16) | 0.0494 (14) | 0.0406 (15) | −0.0026 (12) | 0.0029 (12) | 0.0028 (12) |
| C14 | 0.0585 (15) | 0.0488 (13) | 0.0410 (14) | −0.0022 (11) | 0.0036 (12) | −0.0052 (10) |
| O1—C12 | 1.219 (3) | C5—C10 | 1.440 (3) |
| O2—C13 | 1.209 (3) | C5—C6 | 1.419 (3) |
| O3—C9 | 1.361 (3) | C7—C8 | 1.355 (3) |
| O3—H4 | 0.8200 | C8—C9 | 1.405 (3) |
| N1—N2 | 1.3726 (19) | C9—C10 | 1.385 (3) |
| N1—C11 | 1.293 (2) | C10—C11 | 1.443 (3) |
| N2—C12 | 1.357 (2) | C13—C14 | 1.508 (3) |
| N2—C14 | 1.451 (3) | C1—H1 | 0.9300 |
| N3—C13 | 1.362 (3) | C2—H2 | 0.9300 |
| N3—C12 | 1.389 (3) | C3—H3 | 0.9300 |
| N3—H3N | 0.890 (18) | C6—H6 | 0.9300 |
| C1—C6 | 1.366 (3) | C7—H7 | 0.9300 |
| C1—C2 | 1.389 (3) | C8—H8 | 0.9300 |
| C2—C3 | 1.360 (4) | C11—H11 | 0.9300 |
| C3—C4 | 1.413 (3) | C14—H14A | 0.9700 |
| C4—C7 | 1.413 (4) | C14—H14B | 0.9700 |
| C4—C5 | 1.416 (3) | ||
| C9—O3—H4 | 109.00 | N2—C12—N3 | 106.33 (17) |
| N2—N1—C11 | 116.51 (16) | O1—C12—N2 | 127.76 (17) |
| N1—N2—C14 | 125.77 (14) | O1—C12—N3 | 125.91 (18) |
| C12—N2—C14 | 112.17 (15) | O2—C13—N3 | 126.88 (18) |
| N1—N2—C12 | 121.80 (16) | O2—C13—C14 | 126.97 (19) |
| C12—N3—C13 | 113.02 (17) | N3—C13—C14 | 106.15 (17) |
| C13—N3—H3N | 123.1 (13) | N2—C14—C13 | 102.24 (15) |
| C12—N3—H3N | 123.7 (13) | C2—C1—H1 | 119.00 |
| C2—C1—C6 | 121.3 (2) | C6—C1—H1 | 119.00 |
| C1—C2—C3 | 119.5 (2) | C1—C2—H2 | 120.00 |
| C2—C3—C4 | 121.1 (2) | C3—C2—H2 | 120.00 |
| C3—C4—C5 | 119.8 (2) | C2—C3—H3 | 119.00 |
| C3—C4—C7 | 121.57 (18) | C4—C3—H3 | 119.00 |
| C5—C4—C7 | 118.64 (19) | C1—C6—H6 | 119.00 |
| C4—C5—C10 | 119.44 (19) | C5—C6—H6 | 119.00 |
| C4—C5—C6 | 117.23 (19) | C4—C7—H7 | 119.00 |
| C6—C5—C10 | 123.33 (17) | C8—C7—H7 | 119.00 |
| C1—C6—C5 | 121.07 (18) | C7—C8—H8 | 120.00 |
| C4—C7—C8 | 121.78 (19) | C9—C8—H8 | 120.00 |
| C7—C8—C9 | 120.2 (2) | N1—C11—H11 | 119.00 |
| C8—C9—C10 | 121.05 (19) | C10—C11—H11 | 119.00 |
| O3—C9—C10 | 123.12 (17) | N2—C14—H14A | 111.00 |
| O3—C9—C8 | 115.82 (19) | N2—C14—H14B | 111.00 |
| C5—C10—C9 | 118.88 (17) | C13—C14—H14A | 111.00 |
| C5—C10—C11 | 119.83 (18) | C13—C14—H14B | 111.00 |
| C9—C10—C11 | 121.27 (18) | H14A—C14—H14B | 109.00 |
| N1—C11—C10 | 122.37 (18) | ||
| C11—N1—N2—C12 | −177.23 (16) | C7—C4—C5—C10 | −1.2 (3) |
| C11—N1—N2—C14 | 9.1 (2) | C3—C4—C7—C8 | −179.6 (2) |
| N2—N1—C11—C10 | −179.57 (16) | C5—C4—C7—C8 | −0.2 (3) |
| N1—N2—C12—O1 | 2.8 (3) | C4—C5—C6—C1 | 2.3 (3) |
| N1—N2—C12—N3 | −177.61 (15) | C10—C5—C6—C1 | −178.07 (19) |
| C14—N2—C12—O1 | 177.26 (19) | C4—C5—C10—C9 | 2.3 (3) |
| C14—N2—C12—N3 | −3.1 (2) | C4—C5—C10—C11 | −175.93 (17) |
| N1—N2—C14—C13 | 176.87 (16) | C6—C5—C10—C9 | −177.34 (18) |
| C12—N2—C14—C13 | 2.7 (2) | C6—C5—C10—C11 | 4.4 (3) |
| C13—N3—C12—O1 | −178.02 (19) | C4—C7—C8—C9 | 0.6 (3) |
| C13—N3—C12—N2 | 2.4 (2) | C7—C8—C9—O3 | 179.31 (19) |
| C12—N3—C13—O2 | 179.8 (2) | C7—C8—C9—C10 | 0.6 (3) |
| C12—N3—C13—C14 | −0.7 (2) | O3—C9—C10—C5 | 179.36 (17) |
| C6—C1—C2—C3 | −0.7 (3) | O3—C9—C10—C11 | −2.4 (3) |
| C2—C1—C6—C5 | −0.9 (3) | C8—C9—C10—C5 | −2.1 (3) |
| C1—C2—C3—C4 | 0.8 (3) | C8—C9—C10—C11 | 176.19 (18) |
| C2—C3—C4—C5 | 0.7 (3) | C5—C10—C11—N1 | 179.33 (17) |
| C2—C3—C4—C7 | −179.9 (2) | C9—C10—C11—N1 | 1.1 (3) |
| C3—C4—C5—C6 | −2.2 (3) | O2—C13—C14—N2 | 178.40 (19) |
| C3—C4—C5—C10 | 178.15 (18) | N3—C13—C14—N2 | −1.1 (2) |
| C7—C4—C5—C6 | 178.47 (18) |
| H··· | ||||
| N3—H3N···O1i | 0.890 (18) | 1.962 (18) | 2.851 (2) | 177.9 (19) |
| O3—H4···N1 | 0.82 | 1.91 | 2.622 (2) | 145 |
| C6—H6···O2ii | 0.93 | 2.55 | 3.469 (2) | 169 |
| C14—H14B···O2ii | 0.97 | 2.36 | 3.038 (2) | 127 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.890 (18) | 1.962 (18) | 2.851 (2) | 177.9 (19) |
| O3—H4⋯N1 | 0.82 | 1.91 | 2.622 (2) | 145 |
| C6—H6⋯O2ii | 0.93 | 2.55 | 3.469 (2) | 169 |
| C14—H14 | 0.97 | 2.36 | 3.038 (2) | 127 |
Symmetry codes: (i) ; (ii) .