Literature DB >> 21587837

(E)-1-[(2-Hy-droxy-1-naphth-yl)methyl-idene-amino]-imidazolidine-2,4-dione.

Liang-Quan Sheng1, Hua-Jie Xu, Na-Na Du, Xue-Yue Jiang.   

Abstract

The title compound, C(14)H(11)N(3)O(3), adopts an E or trans configuration with respect to the C=N bond. In the mol-ecule there is an intra-molecular O-H⋯N hydrogen bond involving the hy-droxy substituent at the 2-positon of the naphthalene ring and the adjacent methyl-ene-amino N atom. The mol-ecule is roughly planar, the dihedral angle between the naphthalene and imidazolidine-2,4-dione mean planes being 8.4 (1)°. In the crystal, pairs of N-H⋯O hydrogen bonds link mol-ecules into inversion dimers. These dimers are futher linked via C-H⋯O inter-actions, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21587837      PMCID: PMC3006989          DOI: 10.1107/S1600536810020118

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the naphthalene group as a fluoro­phore, see: Li et al. (2010 ▶); Iijima et al. (2010 ▶). For a related structure, see: Xu et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H11N3O3 M = 269.26 Monoclinic, a = 11.5122 (7) Å b = 6.0233 (3) Å c = 17.9955 (10) Å β = 96.773 (5)° V = 1239.13 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.40 × 0.30 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.959, T max = 0.969 4288 measured reflections 2136 independent reflections 1053 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.067 S = 0.72 2136 reflections 186 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020118/su2180sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020118/su2180Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11N3O3F(000) = 560
Mr = 269.26Dx = 1.443 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1596 reflections
a = 11.5122 (7) Åθ = 3.1–29.0°
b = 6.0233 (3) ŵ = 0.11 mm1
c = 17.9955 (10) ÅT = 293 K
β = 96.773 (5)°Block, yellow
V = 1239.13 (12) Å30.40 × 0.30 × 0.30 mm
Z = 4
Oxford Diffraction Gemini S Ultra diffractometer2136 independent reflections
Radiation source: fine-focus sealed tube1053 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 15.9149 pixels mm-1θmax = 25.0°, θmin = 3.6°
ω scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = 0→6
Tmin = 0.959, Tmax = 0.969l = 0→21
4288 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.067H atoms treated by a mixture of independent and constrained refinement
S = 0.72w = 1/[σ2(Fo2) + (0.0266P)2] where P = (Fo2 + 2Fc2)/3
2136 reflections(Δ/σ)max = 0.002
186 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.13 e Å3
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm CrysAlisPro (Oxford Diffraction, 2009).
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59888 (11)0.25607 (18)0.48396 (8)0.0491 (5)
O20.40014 (13)0.1526 (2)0.68676 (8)0.0710 (7)
O30.80499 (13)0.8397 (2)0.49453 (8)0.0645 (6)
N10.67397 (13)0.6177 (2)0.57838 (9)0.0420 (6)
N20.59925 (13)0.4517 (2)0.59460 (9)0.0425 (6)
N30.48790 (15)0.1552 (3)0.57835 (10)0.0454 (7)
C10.79653 (19)1.2321 (3)0.80751 (14)0.0665 (10)
C20.8627 (2)1.4184 (4)0.79511 (16)0.0705 (10)
C30.90328 (19)1.4454 (3)0.72772 (16)0.0626 (9)
C40.87808 (17)1.2884 (3)0.66974 (14)0.0504 (9)
C50.80840 (16)1.1006 (3)0.68128 (12)0.0434 (8)
C60.77027 (17)1.0762 (3)0.75298 (13)0.0549 (9)
C70.91986 (18)1.3147 (3)0.59955 (15)0.0606 (10)
C80.89532 (17)1.1653 (4)0.54362 (13)0.0589 (9)
C90.82579 (17)0.9788 (3)0.55419 (13)0.0495 (9)
C100.78023 (16)0.9449 (3)0.62117 (12)0.0413 (8)
C110.70303 (15)0.7611 (3)0.63076 (11)0.0436 (7)
C120.56648 (16)0.2867 (3)0.54520 (12)0.0398 (8)
C130.46509 (18)0.2336 (3)0.64613 (12)0.0503 (9)
C140.53798 (18)0.4406 (3)0.66051 (11)0.0496 (8)
H10.769601.213100.853800.0800*
H20.879101.524000.832600.0850*
H30.948401.569200.719700.0750*
H3N0.4590 (16)0.028 (3)0.5590 (11)0.065 (7)*
H40.767700.731800.506300.0970*
H60.726700.952100.763000.0660*
H70.965401.437900.591500.0730*
H80.924601.186300.498100.0710*
H110.673100.745200.676300.0520*
H14A0.489200.570400.664400.0600*
H14B0.592200.426900.705800.0600*
U11U22U33U12U13U23
O10.0538 (10)0.0529 (8)0.0415 (10)−0.0044 (7)0.0094 (8)−0.0084 (7)
O20.0901 (13)0.0776 (10)0.0488 (11)−0.0257 (9)0.0233 (9)0.0057 (9)
O30.0725 (12)0.0686 (10)0.0544 (11)−0.0094 (8)0.0156 (9)−0.0054 (9)
N10.0401 (10)0.0373 (9)0.0473 (12)−0.0016 (8)0.0000 (9)−0.0017 (9)
N20.0467 (11)0.0387 (10)0.0424 (12)−0.0071 (9)0.0067 (9)−0.0046 (9)
N30.0522 (12)0.0420 (11)0.0421 (13)−0.0091 (9)0.0061 (10)−0.0013 (10)
C10.0649 (16)0.0670 (16)0.0662 (18)−0.0015 (14)0.0014 (14)−0.0187 (14)
C20.0648 (18)0.0583 (16)0.083 (2)0.0033 (13)−0.0137 (16)−0.0216 (15)
C30.0477 (15)0.0391 (13)0.095 (2)−0.0026 (11)−0.0162 (15)−0.0068 (15)
C40.0383 (14)0.0375 (13)0.0718 (18)0.0023 (11)−0.0083 (12)0.0001 (13)
C50.0343 (12)0.0361 (12)0.0576 (16)0.0059 (10)−0.0042 (11)−0.0009 (11)
C60.0523 (15)0.0508 (14)0.0602 (17)−0.0031 (11)0.0014 (13)−0.0107 (13)
C70.0455 (15)0.0441 (14)0.090 (2)−0.0063 (11)−0.0017 (15)0.0105 (14)
C80.0478 (14)0.0590 (15)0.0704 (18)−0.0027 (12)0.0097 (13)0.0143 (14)
C90.0432 (14)0.0457 (13)0.0586 (17)0.0027 (11)0.0013 (12)−0.0004 (12)
C100.0328 (12)0.0372 (12)0.0532 (15)−0.0012 (10)0.0017 (11)0.0029 (11)
C110.0457 (13)0.0405 (11)0.0441 (14)0.0024 (11)0.0037 (11)−0.0020 (11)
C120.0377 (13)0.0386 (13)0.0417 (14)0.0016 (10)−0.0010 (11)0.0013 (11)
C130.0601 (16)0.0494 (14)0.0406 (15)−0.0026 (12)0.0029 (12)0.0028 (12)
C140.0585 (15)0.0488 (13)0.0410 (14)−0.0022 (11)0.0036 (12)−0.0052 (10)
O1—C121.219 (3)C5—C101.440 (3)
O2—C131.209 (3)C5—C61.419 (3)
O3—C91.361 (3)C7—C81.355 (3)
O3—H40.8200C8—C91.405 (3)
N1—N21.3726 (19)C9—C101.385 (3)
N1—C111.293 (2)C10—C111.443 (3)
N2—C121.357 (2)C13—C141.508 (3)
N2—C141.451 (3)C1—H10.9300
N3—C131.362 (3)C2—H20.9300
N3—C121.389 (3)C3—H30.9300
N3—H3N0.890 (18)C6—H60.9300
C1—C61.366 (3)C7—H70.9300
C1—C21.389 (3)C8—H80.9300
C2—C31.360 (4)C11—H110.9300
C3—C41.413 (3)C14—H14A0.9700
C4—C71.413 (4)C14—H14B0.9700
C4—C51.416 (3)
C9—O3—H4109.00N2—C12—N3106.33 (17)
N2—N1—C11116.51 (16)O1—C12—N2127.76 (17)
N1—N2—C14125.77 (14)O1—C12—N3125.91 (18)
C12—N2—C14112.17 (15)O2—C13—N3126.88 (18)
N1—N2—C12121.80 (16)O2—C13—C14126.97 (19)
C12—N3—C13113.02 (17)N3—C13—C14106.15 (17)
C13—N3—H3N123.1 (13)N2—C14—C13102.24 (15)
C12—N3—H3N123.7 (13)C2—C1—H1119.00
C2—C1—C6121.3 (2)C6—C1—H1119.00
C1—C2—C3119.5 (2)C1—C2—H2120.00
C2—C3—C4121.1 (2)C3—C2—H2120.00
C3—C4—C5119.8 (2)C2—C3—H3119.00
C3—C4—C7121.57 (18)C4—C3—H3119.00
C5—C4—C7118.64 (19)C1—C6—H6119.00
C4—C5—C10119.44 (19)C5—C6—H6119.00
C4—C5—C6117.23 (19)C4—C7—H7119.00
C6—C5—C10123.33 (17)C8—C7—H7119.00
C1—C6—C5121.07 (18)C7—C8—H8120.00
C4—C7—C8121.78 (19)C9—C8—H8120.00
C7—C8—C9120.2 (2)N1—C11—H11119.00
C8—C9—C10121.05 (19)C10—C11—H11119.00
O3—C9—C10123.12 (17)N2—C14—H14A111.00
O3—C9—C8115.82 (19)N2—C14—H14B111.00
C5—C10—C9118.88 (17)C13—C14—H14A111.00
C5—C10—C11119.83 (18)C13—C14—H14B111.00
C9—C10—C11121.27 (18)H14A—C14—H14B109.00
N1—C11—C10122.37 (18)
C11—N1—N2—C12−177.23 (16)C7—C4—C5—C10−1.2 (3)
C11—N1—N2—C149.1 (2)C3—C4—C7—C8−179.6 (2)
N2—N1—C11—C10−179.57 (16)C5—C4—C7—C8−0.2 (3)
N1—N2—C12—O12.8 (3)C4—C5—C6—C12.3 (3)
N1—N2—C12—N3−177.61 (15)C10—C5—C6—C1−178.07 (19)
C14—N2—C12—O1177.26 (19)C4—C5—C10—C92.3 (3)
C14—N2—C12—N3−3.1 (2)C4—C5—C10—C11−175.93 (17)
N1—N2—C14—C13176.87 (16)C6—C5—C10—C9−177.34 (18)
C12—N2—C14—C132.7 (2)C6—C5—C10—C114.4 (3)
C13—N3—C12—O1−178.02 (19)C4—C7—C8—C90.6 (3)
C13—N3—C12—N22.4 (2)C7—C8—C9—O3179.31 (19)
C12—N3—C13—O2179.8 (2)C7—C8—C9—C100.6 (3)
C12—N3—C13—C14−0.7 (2)O3—C9—C10—C5179.36 (17)
C6—C1—C2—C3−0.7 (3)O3—C9—C10—C11−2.4 (3)
C2—C1—C6—C5−0.9 (3)C8—C9—C10—C5−2.1 (3)
C1—C2—C3—C40.8 (3)C8—C9—C10—C11176.19 (18)
C2—C3—C4—C50.7 (3)C5—C10—C11—N1179.33 (17)
C2—C3—C4—C7−179.9 (2)C9—C10—C11—N11.1 (3)
C3—C4—C5—C6−2.2 (3)O2—C13—C14—N2178.40 (19)
C3—C4—C5—C10178.15 (18)N3—C13—C14—N2−1.1 (2)
C7—C4—C5—C6178.47 (18)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O1i0.890 (18)1.962 (18)2.851 (2)177.9 (19)
O3—H4···N10.821.912.622 (2)145
C6—H6···O2ii0.932.553.469 (2)169
C14—H14B···O2ii0.972.363.038 (2)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O1i0.890 (18)1.962 (18)2.851 (2)177.9 (19)
O3—H4⋯N10.821.912.622 (2)145
C6—H6⋯O2ii0.932.553.469 (2)169
C14—H14B⋯O2ii0.972.363.038 (2)127

Symmetry codes: (i) ; (ii) .

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