Literature DB >> 21583801

[2,6-Bis(4,5-dihydro-1H-imidazol-2-yl)pyridine]dichloridomanganese(II).

Chun-Xia Ren, Su-Yun Li, Zhao-Zhong Yin, Xiang Lu, Yu-Qiang Ding.   

Abstract

In the title compound, [MnCl(2)(C(11)H(13)N(5))], the Mn(II) ion is five-coordinated in a distorted square-pyramidal geometry, with three N atoms from the neutral tridentate 2,6-bis-(4,5-dihydro-1H-imidazol-2-yl)pyridine ligand and one chloride ion forming the basal plane and the other chloride ion in the apical position. Both dihydro-imidazole rings adopt envelope conformations. In the crystal structure, mol-ecules are linked into a three-dimensional network by N-H⋯Cl and C-H⋯Cl hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583801      PMCID: PMC2977615          DOI: 10.1107/S1600536809014354

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2,6-bis­(4,5-dihydro-1H-imidazol-2-yl)­pyridine, see: Baker et al. (1991 ▶). For general background, see: Bordo et al. (2001 ▶); Hagrman et al. (1999 ▶); Yaghi et al. (1998 ▶). For related structures, see: Böca et al. (2005 ▶); Haga et al. (1996 ▶); Hammes et al. (2005 ▶); Ren, Ye, He et al. (2004 ▶); Ren, Ye, Zhu et al. (2004 ▶); Ren et al. (2007 ▶); Stupka et al. (2004 ▶); Sun et al. (2008 ▶).

Experimental

Crystal data

[MnCl2(C11H13N5)] M = 341.10 Monoclinic, a = 9.297 (5) Å b = 12.686 (7) Å c = 12.383 (6) Å β = 100.313 (9)° V = 1436.9 (13) Å3 Z = 4 Mo Kα radiation μ = 1.28 mm−1 T = 273 K 0.30 × 0.25 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS, Bruker, 1998 ▶) T min = 0.700, T max = 0.774 8507 measured reflections 3317 independent reflections 1750 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.187 S = 0.95 3317 reflections 173 parameters H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.53 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809014354/ci2778sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014354/ci2778Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[MnCl2(C11H13N5)]F(000) = 692
Mr = 341.10Dx = 1.577 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1365 reflections
a = 9.297 (5) Åθ = 2.3–23.1°
b = 12.686 (7) ŵ = 1.28 mm1
c = 12.383 (6) ÅT = 273 K
β = 100.313 (9)°Block, yellow
V = 1436.9 (13) Å30.30 × 0.25 × 0.21 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3317 independent reflections
Radiation source: fine-focus sealed tube1750 reflections with I > 2σ(I)
graphiteRint = 0.077
φ and ω scansθmax = 27.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS, Bruker, 1998)h = −10→12
Tmin = 0.700, Tmax = 0.774k = −10→16
8507 measured reflectionsl = −16→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.067H-atom parameters constrained
wR(F2) = 0.187w = 1/[σ2(Fo2) + (0.0956P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max = 0.001
3317 reflectionsΔρmax = 0.68 e Å3
173 parametersΔρmin = −0.53 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn11.09096 (8)0.66191 (6)0.31687 (6)0.0431 (3)
Cl11.33924 (15)0.63750 (13)0.29973 (12)0.0605 (5)
Cl20.96929 (17)0.77218 (13)0.17311 (13)0.0697 (5)
N10.9960 (5)0.8515 (3)0.5846 (4)0.0519 (12)
H10.92620.86440.61980.062*
N21.1031 (5)0.7757 (3)0.4559 (3)0.0492 (11)
N30.9235 (4)0.6172 (3)0.4186 (3)0.0360 (9)
N40.9927 (4)0.5062 (3)0.2597 (3)0.0458 (11)
N50.8274 (5)0.3790 (4)0.2646 (4)0.0542 (12)
H5A0.76470.34290.29230.065*
C11.1869 (7)0.8745 (5)0.4878 (5)0.0587 (16)
H1A1.16770.92660.42970.070*
H1B1.29110.86060.50450.070*
C21.1298 (6)0.9119 (5)0.5908 (5)0.0606 (16)
H2A1.19880.89570.65730.073*
H2B1.11030.98700.58810.073*
C31.0010 (5)0.7721 (4)0.5141 (4)0.0413 (12)
C40.8964 (5)0.6824 (4)0.4970 (4)0.0359 (11)
C50.7820 (5)0.6653 (4)0.5540 (4)0.0432 (12)
H50.76260.71260.60690.052*
C60.6986 (6)0.5756 (4)0.5292 (4)0.0510 (14)
H60.62220.56130.56620.061*
C70.7285 (5)0.5069 (4)0.4493 (4)0.0474 (13)
H70.67370.44590.43250.057*
C80.8416 (5)0.5311 (4)0.3951 (4)0.0387 (11)
C90.8875 (5)0.4711 (4)0.3049 (4)0.0388 (11)
C100.8854 (7)0.3506 (5)0.1671 (5)0.0618 (17)
H10A0.81370.36150.10080.074*
H10B0.91860.27810.17000.074*
C111.0136 (6)0.4282 (5)0.1743 (5)0.0595 (16)
H11A1.10620.39180.19500.071*
H11B1.01230.46290.10430.071*
U11U22U33U12U13U23
Mn10.0457 (5)0.0447 (5)0.0447 (5)−0.0006 (4)0.0233 (4)0.0035 (4)
Cl10.0490 (8)0.0707 (10)0.0689 (9)0.0051 (7)0.0298 (7)0.0207 (8)
Cl20.0638 (10)0.0713 (11)0.0796 (11)0.0170 (8)0.0280 (8)0.0339 (9)
N10.056 (3)0.046 (3)0.061 (3)−0.016 (2)0.029 (2)−0.013 (2)
N20.050 (3)0.049 (3)0.054 (3)−0.013 (2)0.025 (2)0.000 (2)
N30.041 (2)0.034 (2)0.035 (2)−0.0027 (18)0.0134 (18)0.0013 (19)
N40.052 (3)0.044 (3)0.046 (2)0.003 (2)0.024 (2)−0.002 (2)
N50.065 (3)0.045 (3)0.058 (3)−0.009 (2)0.025 (2)−0.010 (2)
C10.062 (4)0.048 (3)0.071 (4)−0.015 (3)0.027 (3)−0.001 (3)
C20.065 (4)0.054 (4)0.066 (4)−0.014 (3)0.021 (3)−0.011 (3)
C30.042 (3)0.044 (3)0.040 (3)−0.003 (2)0.014 (2)0.002 (2)
C40.043 (3)0.032 (3)0.036 (2)−0.001 (2)0.017 (2)0.004 (2)
C50.049 (3)0.045 (3)0.041 (3)−0.002 (3)0.021 (2)0.001 (2)
C60.054 (3)0.050 (3)0.058 (3)−0.004 (3)0.034 (3)0.004 (3)
C70.043 (3)0.048 (3)0.055 (3)−0.008 (3)0.020 (3)0.000 (3)
C80.039 (3)0.037 (3)0.042 (3)0.003 (2)0.013 (2)0.004 (2)
C90.046 (3)0.032 (3)0.039 (3)0.003 (2)0.009 (2)0.004 (2)
C100.076 (4)0.056 (4)0.056 (3)0.012 (3)0.017 (3)−0.012 (3)
C110.066 (4)0.064 (4)0.054 (3)0.003 (3)0.027 (3)−0.012 (3)
Mn1—N22.234 (4)C1—H1A0.97
Mn1—N42.237 (4)C1—H1B0.97
Mn1—N32.244 (4)C2—H2A0.97
Mn1—Cl12.3759 (19)C2—H2B0.97
Mn1—Cl22.3842 (18)C3—C41.486 (7)
N1—C31.340 (7)C4—C51.397 (6)
N1—C21.450 (7)C5—C61.380 (8)
N1—H10.86C5—H50.93
N2—C31.291 (6)C6—C71.382 (7)
N2—C11.489 (7)C6—H60.93
N3—C41.333 (6)C7—C81.380 (6)
N3—C81.333 (6)C7—H70.93
N4—C91.289 (6)C8—C91.476 (7)
N4—C111.487 (7)C10—C111.535 (9)
N5—C91.352 (7)C10—H10A0.97
N5—C101.455 (7)C10—H10B0.97
N5—H5A0.86C11—H11A0.97
C1—C21.542 (8)C11—H11B0.97
N2—Mn1—N4140.86 (14)C1—C2—H2B111.3
N2—Mn1—N371.04 (14)H2A—C2—H2B109.2
N4—Mn1—N370.69 (14)N2—C3—N1116.8 (5)
N2—Mn1—Cl1103.72 (12)N2—C3—C4118.3 (5)
N4—Mn1—Cl1101.82 (11)N1—C3—C4124.8 (4)
N3—Mn1—Cl1143.13 (12)N3—C4—C5122.1 (5)
N2—Mn1—Cl298.52 (13)N3—C4—C3112.1 (4)
N4—Mn1—Cl299.76 (12)C5—C4—C3125.8 (4)
N3—Mn1—Cl2106.47 (12)C6—C5—C4117.7 (5)
Cl1—Mn1—Cl2110.39 (6)C6—C5—H5121.2
C3—N1—C2107.6 (4)C4—C5—H5121.2
C3—N1—H1126.2C5—C6—C7120.1 (5)
C2—N1—H1126.2C5—C6—H6119.9
C3—N2—C1106.5 (4)C7—C6—H6119.9
C3—N2—Mn1117.8 (4)C8—C7—C6118.6 (5)
C1—N2—Mn1134.3 (3)C8—C7—H7120.7
C4—N3—C8119.6 (4)C6—C7—H7120.7
C4—N3—Mn1119.4 (3)N3—C8—C7121.9 (5)
C8—N3—Mn1120.7 (3)N3—C8—C9110.9 (4)
C9—N4—C11106.5 (5)C7—C8—C9127.1 (5)
C9—N4—Mn1117.8 (3)N4—C9—N5115.8 (5)
C11—N4—Mn1135.6 (3)N4—C9—C8119.6 (5)
C9—N5—C10109.2 (5)N5—C9—C8124.5 (4)
C9—N5—H5A125.4N5—C10—C11101.1 (5)
C10—N5—H5A125.4N5—C10—H10A111.6
N2—C1—C2103.7 (4)C11—C10—H10A111.6
N2—C1—H1A111.0N5—C10—H10B111.6
C2—C1—H1A111.0C11—C10—H10B111.6
N2—C1—H1B111.0H10A—C10—H10B109.4
C2—C1—H1B111.0N4—C11—C10105.6 (4)
H1A—C1—H1B109.0N4—C11—H11A110.6
N1—C2—C1102.3 (5)C10—C11—H11A110.6
N1—C2—H2A111.3N4—C11—H11B110.6
C1—C2—H2A111.3C10—C11—H11B110.6
N1—C2—H2B111.3H11A—C11—H11B108.7
D—H···AD—HH···AD···AD—H···A
N5—H5A···Cl2i0.862.463.287 (5)161
N1—H1···Cl1ii0.862.503.261 (5)147
C7—H7···Cl2i0.932.783.681 (6)164
Table 1

Selected bond lengths (Å)

Mn1—N22.234 (4)
Mn1—N42.237 (4)
Mn1—N32.244 (4)
Mn1—Cl12.3759 (19)
Mn1—Cl22.3842 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5A⋯Cl2i0.862.463.287 (5)161
N1—H1⋯Cl1ii0.862.503.261 (5)147
C7—H7⋯Cl2i0.932.783.681 (6)164

Symmetry codes: (i) ; (ii) .

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