Literature DB >> 21577391

Bis[2,6-bis-(4,5-dihydro-1H-imidazol-2-yl)pyridine]manganese(II) bis-(per-chlorate) acetonitrile solvate.

Shao-Ming Shang, Chun-Xia Ren, Xin Wang, Lu-De Lu, Xu-Jie Yang.   

Abstract

In the cation of the title compound, [Mn(C(11)H(13)N(5))(2)](ClO(4))(2)·CH(3)CN, the metal atom is located on a twofold rotation axis and is six-coordinated by six N atoms from two different 2,6-bis-(4,5-dihydro-1H-imidazol-2-yl)pyridine (bip) ligands in a distorted octahedral geometry. The O atoms of the perchlorate anions are disordered with occupancies in the ratio 0.593 (10):0.407 (10). In the crystal, mol-ecules are stabilized by two N-H⋯O hydrogen bonds, forming zigzag chains along the a axis, which are further inter-connected by N-H⋯O hydrogen bonds and π-π inter-actions [centroid-centroid distance = 3.50 (1) Å] into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21577391      PMCID: PMC2970088          DOI: 10.1107/S1600536809029195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the network topologies and potential applications of supra­molecular architectures, see: Yaghi et al. (1998 ▶); Hagrman et al. (1999 ▶). The protonation and deprotonation of an imidazole ligand is believed to play an important role in the mechanism of the coordination chemistry, see: Bordo et al. (2001 ▶). Our studies of such complexes involving an imidazole ligand indicate that hydrogen bonding involving this group influences the geometry around the metal atom and the crystallization mechanism, see: Ren et al. (2007 ▶, 2009 ▶); Ren, Ye, He et al. (2004 ▶); Ren, Ye, Zhu et al. (2004 ▶). For metalimidazole bond lengths, see: Stupka et al. (2004 ▶); Hammes et al. (2005 ▶); Haga et al. (1996 ▶); Böca et al. (2005 ▶). For metalimidazole bond lengths, see: Ren et al. (2009 ▶). For the synthesis of 2,6-bis­(4,5-dihydro-1H-imidazol-2-yl)pyridine, see: Baker et al. (1991 ▶).

Experimental

Crystal data

[Mn(C11H13N5)2](ClO4)2·C2H3N M = 725.42 Monoclinic, a = 20.521 (5) Å b = 12.732 (5) Å c = 14.602 (6) Å β = 123.893 (10)° V = 3167.0 (19) Å3 Z = 4 Mo Kα radiation μ = 0.65 mm−1 T = 273 K 0.28 × 0.21 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.837, T max = 0.912 7799 measured reflections 2821 independent reflections 1277 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.121 S = 0.79 2821 reflections 246 parameters 94 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029195/tk2501sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029195/tk2501Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C11H13N5)2](ClO4)2·C2H3NF(000) = 1492
Mr = 725.42Dx = 1.521 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 20.521 (5) ÅCell parameters from 668 reflections
b = 12.732 (5) Åθ = 2.0–25.1°
c = 14.602 (6) ŵ = 0.65 mm1
β = 123.893 (10)°T = 273 K
V = 3167.0 (19) Å3Block, yellow
Z = 40.28 × 0.21 × 0.14 mm
Bruker SMART CCD area-detector diffractometer2821 independent reflections
Radiation source: fine-focus sealed tube1277 reflections with I > 2σ(I)
graphiteRint = 0.056
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −22→24
Tmin = 0.837, Tmax = 0.912k = −11→15
7799 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 0.79w = 1/[σ2(Fo2) + (0.0647P)2] where P = (Fo2 + 2Fc2)/3
2821 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.33 e Å3
94 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Mn10.50000.94417 (7)0.75000.0488 (3)
N10.51856 (17)0.8931 (3)0.9132 (2)0.0468 (8)
N20.59227 (18)1.0487 (2)0.8898 (2)0.0539 (8)
N30.6779 (2)1.0731 (3)1.0725 (3)0.0708 (10)
H3A0.69791.06351.14160.085*
N40.40797 (17)0.8262 (2)0.7177 (2)0.0524 (8)
N50.3602 (2)0.7083 (3)0.7785 (3)0.0833 (12)
H5A0.35810.67300.82710.100*
C10.6436 (2)1.1375 (4)0.9029 (3)0.0746 (13)
H1A0.61301.20130.87210.090*
H1B0.66931.12250.86520.090*
C20.7041 (3)1.1503 (4)1.0259 (3)0.0785 (14)
H2A0.75661.13471.04530.094*
H2B0.70321.22081.05040.094*
C30.6168 (2)1.0191 (3)0.9886 (3)0.0509 (10)
C40.5788 (2)0.9317 (3)1.0073 (3)0.0450 (9)
C50.6011 (2)0.8891 (3)1.1076 (3)0.0630 (12)
H50.64300.91691.17330.076*
C60.5594 (3)0.8037 (4)1.1076 (3)0.0757 (14)
H60.57360.77301.17410.091*
C70.4970 (2)0.7637 (4)1.0097 (3)0.0678 (13)
H70.46890.70621.00900.081*
C80.4778 (2)0.8114 (3)0.9136 (3)0.0506 (10)
C90.4140 (2)0.7806 (3)0.8007 (3)0.0525 (11)
C100.3053 (3)0.6981 (4)0.6593 (3)0.0818 (14)
H10A0.25230.71660.63610.098*
H10B0.30540.62790.63350.098*
N60.50000.3462 (7)0.75000.186 (4)
C120.50000.5403 (7)0.75000.178 (5)
H12B0.52940.57120.72380.214*0.50
H12A0.51890.55830.82470.214*0.50
H12C0.44530.55830.70730.214*0.50
C130.50000.4339 (7)0.75000.116 (3)
C110.3378 (2)0.7797 (3)0.6178 (3)0.0664 (12)
H11A0.35200.74540.57200.080*
H11B0.29910.83340.57420.080*
Cl10.32690 (9)0.52285 (13)0.39585 (12)0.1026 (5)
O10.3119 (7)0.5391 (11)0.4824 (8)0.147 (6)0.407 (10)
O20.4047 (4)0.4898 (11)0.4424 (8)0.152 (7)0.407 (10)
O30.2745 (6)0.4409 (11)0.3284 (13)0.209 (9)0.407 (10)
O40.3090 (11)0.6156 (10)0.3332 (15)0.264 (11)0.407 (10)
O1'0.3558 (5)0.6031 (6)0.4718 (7)0.151 (5)0.593 (10)
O2'0.3455 (6)0.4194 (5)0.4361 (7)0.139 (5)0.593 (10)
O3'0.2464 (3)0.5354 (7)0.3137 (5)0.139 (4)0.593 (10)
O4'0.3628 (7)0.5401 (8)0.3310 (10)0.217 (7)0.593 (10)
U11U22U33U12U13U23
Mn10.0517 (6)0.0556 (6)0.0338 (5)0.0000.0205 (4)0.000
N10.047 (2)0.054 (2)0.0324 (18)−0.0002 (17)0.0180 (17)−0.0028 (15)
N20.059 (2)0.058 (2)0.0378 (19)−0.0088 (18)0.0229 (16)0.0011 (16)
N30.074 (2)0.084 (3)0.0357 (19)−0.030 (2)0.0196 (19)−0.0089 (19)
N40.051 (2)0.059 (2)0.0362 (18)−0.0072 (17)0.0177 (17)−0.0039 (16)
N50.091 (3)0.093 (3)0.046 (2)−0.046 (3)0.027 (2)−0.007 (2)
C10.088 (3)0.072 (3)0.054 (3)−0.023 (3)0.034 (3)−0.004 (2)
C20.081 (3)0.091 (4)0.053 (3)−0.030 (3)0.032 (3)−0.009 (2)
C30.049 (3)0.055 (3)0.042 (2)−0.002 (2)0.022 (2)−0.004 (2)
C40.047 (2)0.051 (3)0.034 (2)0.000 (2)0.020 (2)−0.002 (2)
C50.065 (3)0.076 (3)0.035 (2)−0.010 (3)0.019 (2)−0.003 (2)
C60.093 (4)0.089 (4)0.039 (3)−0.014 (3)0.033 (3)0.008 (2)
C70.080 (3)0.076 (3)0.040 (3)−0.022 (3)0.029 (2)−0.001 (2)
C80.047 (2)0.056 (3)0.043 (2)−0.005 (2)0.021 (2)−0.003 (2)
C90.054 (3)0.055 (3)0.040 (2)−0.008 (2)0.021 (2)−0.003 (2)
C100.081 (3)0.087 (4)0.058 (3)−0.034 (3)0.027 (3)−0.015 (3)
N60.304 (12)0.120 (8)0.196 (9)0.0000.179 (9)0.000
C120.163 (10)0.098 (8)0.154 (9)0.0000.013 (7)0.000
C130.153 (8)0.094 (8)0.124 (7)0.0000.091 (6)0.000
C110.062 (3)0.073 (3)0.044 (2)−0.018 (2)0.017 (2)−0.010 (2)
Cl10.0956 (11)0.0967 (12)0.0876 (10)0.0154 (9)0.0339 (9)−0.0296 (9)
O10.165 (12)0.155 (13)0.094 (7)0.048 (10)0.056 (8)−0.039 (7)
O20.077 (6)0.243 (16)0.111 (10)0.016 (7)0.038 (6)−0.023 (10)
O30.105 (9)0.242 (16)0.247 (18)−0.054 (11)0.079 (11)−0.189 (15)
O40.31 (3)0.224 (15)0.27 (2)0.084 (15)0.17 (2)0.105 (15)
O1'0.134 (7)0.129 (7)0.109 (6)0.003 (5)0.017 (5)−0.077 (6)
O2'0.211 (13)0.103 (5)0.137 (7)0.059 (7)0.118 (8)0.025 (5)
O3'0.110 (5)0.159 (9)0.065 (4)−0.011 (5)−0.004 (4)−0.018 (4)
O4'0.320 (15)0.167 (10)0.300 (16)−0.050 (10)0.256 (16)−0.056 (9)
Mn1—N42.247 (3)C5—C61.384 (5)
Mn1—N4i2.247 (3)C5—H50.9300
Mn1—N22.283 (3)C6—C71.378 (5)
Mn1—N2i2.283 (3)C6—H60.9300
Mn1—N12.287 (3)C7—C81.370 (5)
Mn1—N1i2.287 (3)C7—H70.9300
N1—C41.328 (4)C8—C91.476 (5)
N1—C81.337 (4)C10—C111.530 (5)
N2—C31.292 (4)C10—H10A0.9700
N2—C11.484 (5)C10—H10B0.9700
N3—C31.354 (5)N6—C131.117 (10)
N3—C21.458 (5)C12—C131.3547
N3—H3A0.8600C12—H12B0.9600
N4—C91.287 (4)C12—H12A0.9600
N4—C111.486 (4)C12—H12C0.9600
N5—C91.332 (4)C11—H11A0.9700
N5—C101.459 (5)C11—H11B0.9700
N5—H5A0.8600Cl1—O1'1.376 (5)
C1—C21.519 (5)Cl1—O2'1.406 (5)
C1—H1A0.9700Cl1—O21.407 (6)
C1—H1B0.9700Cl1—O3'1.409 (5)
C2—H2A0.9700Cl1—O41.411 (7)
C2—H2B0.9700Cl1—O31.426 (7)
C3—C41.468 (5)Cl1—O11.474 (7)
C4—C51.379 (5)Cl1—O4'1.505 (6)
N4—Mn1—N4i96.14 (16)C8—C7—H7121.0
N4—Mn1—N2139.28 (11)C6—C7—H7121.0
N4i—Mn1—N291.20 (11)N1—C8—C7121.8 (4)
N4—Mn1—N2i91.20 (11)N1—C8—C9111.6 (3)
N4i—Mn1—N2i139.28 (11)C7—C8—C9126.6 (4)
N2—Mn1—N2i108.70 (16)N4—C9—N5116.9 (3)
N4—Mn1—N170.18 (11)N4—C9—C8119.4 (4)
N4i—Mn1—N187.66 (10)N5—C9—C8123.7 (4)
N2—Mn1—N170.18 (12)N5—C10—C11101.3 (3)
N2i—Mn1—N1132.10 (10)N5—C10—H10A111.3
N4—Mn1—N1i87.66 (10)C11—C10—H10A110.3
N4i—Mn1—N1i70.18 (11)N5—C10—H10B112.2
N2—Mn1—N1i132.10 (11)C11—C10—H10B112.1
N2i—Mn1—N1i70.18 (11)H10A—C10—H10B109.4
N1—Mn1—N1i146.97 (17)C13—C12—H12B114.2
C4—N1—C8120.4 (3)C13—C12—H12A103.9
C4—N1—Mn1119.4 (2)H12B—C12—H12A114.2
C8—N1—Mn1119.0 (2)C13—C12—H12C103.9
C3—N2—C1105.8 (3)H12B—C12—H12C114.2
C3—N2—Mn1116.2 (3)H12A—C12—H12C105.4
C1—N2—Mn1137.3 (2)N6—C13—C12180.000 (6)
C3—N3—C2108.5 (3)N4—C11—C10106.3 (3)
C3—N3—H3A125.7N4—C11—H11A110.9
C2—N3—H3A125.7C10—C11—H11A109.5
C9—N4—C11106.0 (3)N4—C11—H11B110.7
C9—N4—Mn1118.4 (3)C10—C11—H11B111.2
C11—N4—Mn1135.5 (2)H11A—C11—H11B108.3
C9—N5—C10109.6 (3)O1'—Cl1—O2'117.7 (5)
C9—N5—H5A125.2O1'—Cl1—O288.3 (5)
C10—N5—H5A125.2O2'—Cl1—O263.0 (5)
N2—C1—C2106.7 (3)O1'—Cl1—O3'112.1 (4)
N2—C1—H1A110.4O2'—Cl1—O3'112.2 (5)
C2—C1—H1A110.4O2—Cl1—O3'157.2 (5)
N2—C1—H1B110.4O1'—Cl1—O474.9 (8)
C2—C1—H1B110.4O2'—Cl1—O4165.2 (8)
H1A—C1—H1B108.6O2—Cl1—O4112.3 (7)
N3—C2—C1102.0 (3)O3'—Cl1—O466.1 (7)
N3—C2—H2A111.4O1'—Cl1—O3157.0 (5)
C1—C2—H2A111.4O2'—Cl1—O361.8 (7)
N3—C2—H2B111.4O2—Cl1—O3109.3 (6)
C1—C2—H2B111.4O3'—Cl1—O354.5 (6)
H2A—C2—H2B109.2O4—Cl1—O3109.9 (7)
N2—C3—N3116.7 (4)O1'—Cl1—O153.6 (5)
N2—C3—C4120.8 (3)O2'—Cl1—O184.9 (6)
N3—C3—C4122.5 (3)O2—Cl1—O1110.6 (6)
N1—C4—C5121.3 (4)O3'—Cl1—O190.5 (5)
N1—C4—C3111.9 (3)O4—Cl1—O1109.6 (6)
C5—C4—C3126.8 (4)O3—Cl1—O1104.9 (6)
C4—C5—C6118.1 (4)O1'—Cl1—O4'104.9 (5)
C4—C5—H5121.0O2'—Cl1—O4'106.6 (4)
C6—C5—H5121.0O2—Cl1—O4'61.7 (5)
C7—C6—C5120.4 (4)O3'—Cl1—O4'101.6 (5)
C7—C6—H6119.8O4—Cl1—O4'60.8 (7)
C5—C6—H6119.8O3—Cl1—O4'96.7 (6)
C8—C7—C6118.0 (4)O1—Cl1—O4'158.3 (6)
D—H···AD—HH···AD···AD—H···A
N5—H5A···O2ii0.862.503.237 (12)144
N5—H5A···O3ii0.862.252.942 (12)137
N5—H5A···O2'ii0.862.112.965 (8)176
N3—H3A···O4iii0.862.523.26 (2)144
N3—H3A···O3'iii0.862.163.015 (8)178
Table 1

Selected geometric parameters (Å, °)

Mn1—N42.247 (3)
Mn1—N22.283 (3)
Mn1—N12.287 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5A⋯O2ii0.862.503.237 (12)144
N5—H5A⋯O3ii0.862.252.942 (12)137
N5—H5A⋯O2′ii0.862.112.965 (8)176
N3—H3A⋯O4iii0.862.523.26 (2)144
N3—H3A⋯O3′iii0.862.163.015 (8)178

Symmetry codes: (ii) ; (iii) .

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