Literature DB >> 21577622

1,4-Bis(4,5-dihydro-1H-imidazol-2-yl)benzene-4-amino-benzene-sulfonic acid-water (1/2/2).

Shao-Ming Shang, Chun-Xia Ren, Xin Wang, Lu-De Lu, Xu-Jie Yang.   

Abstract

The asymmetric unit of the title compound, C(12)H(14)N(4)·2C(6)H(7)NO(3)S·2H(2)O, contains one half of a centrosymmetric 1,4-bis-(4,5-dihydro-1H-imidazol-2-yl)benzene (bib) molecule, one 4-amino-benzene-sulfonic acid molecule and one water mol-ecule. In the bib molecule, the imidazole ring adopts an envelope conformation. The benzene rings of bib and 4-aminobenzenesulfonic acid are oriented at a dihedral angle of 21.89 (4)°. In the crystal structure, inter-molecular N-H⋯O, O-H⋯N and O-H⋯O inter-actions link the mol-ecules into a three-dimensional network. Weak π-π contacts between the benzene and imidazole rings and between the benzene rings [centroid-centroid distances = 3.895 (1) and 3.833 (1) Å, respectively] may further stabilize the structure.

Entities:  

Year:  2009        PMID: 21577622      PMCID: PMC2969902          DOI: 10.1107/S1600536809032504

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Jeffrey (1997 ▶); Thaimattam et al. (1998 ▶). For related structures, see: Ren et al. (2004a ▶,b ▶, 2007 ▶, 2009 ▶). For imidazole bond lengths, see: Haga et al. (1996 ▶); Hammes et al. (2005 ▶).

Experimental

Crystal data

C12H14N4·2C6H7NO3S·2H2O M = 596.70 Orthorhombic, a = 13.6306 (11) Å b = 12.698 (1) Å c = 15.5907 (13) Å V = 2698.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 273 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.962, T max = 0.975 11859 measured reflections 2346 independent reflections 1856 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.140 S = 1.08 2346 reflections 182 parameters All H-atom parameters refined Δρmax = 0.45 e Å−3 Δρmin = −0.42 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032504/hk2751sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032504/hk2751Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N4·2C6H7NO3S·2H2OF(000) = 1256
Mr = 596.70Dx = 1.469 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3721 reflections
a = 13.6306 (11) Åθ = 2.6–26.3°
b = 12.698 (1) ŵ = 0.26 mm1
c = 15.5907 (13) ÅT = 273 K
V = 2698.5 (4) Å3Block, yellow
Z = 40.15 × 0.12 × 0.10 mm
Bruker SMART CCD area-detector diffractometer2346 independent reflections
Radiation source: fine-focus sealed tube1856 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 25.1°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −16→15
Tmin = 0.962, Tmax = 0.975k = −15→15
11859 measured reflectionsl = −18→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045All H-atom parameters refined
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.0724P)2 + 1.4974P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2346 reflectionsΔρmax = 0.45 e Å3
182 parametersΔρmin = −0.42 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0010 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.20619 (5)0.82812 (5)0.31074 (4)0.0423 (3)
O10.29197 (15)0.8625 (2)0.26382 (13)0.0688 (7)
O20.1875 (2)0.71668 (16)0.30647 (13)0.0681 (7)
O30.12151 (14)0.88982 (15)0.28322 (11)0.0536 (5)
H3A0.07290.87140.31040.080*
O4−0.06007 (17)0.8498 (2)0.36193 (13)0.0774 (8)
H4A−0.06460.80280.40060.093*
H4B−0.11050.88460.34700.093*
N10.2770 (2)0.9242 (2)0.67696 (14)0.0615 (8)
H1A0.27750.87400.71400.074*
H1B0.28840.98780.69300.074*
N20.51620 (17)0.7721 (2)0.34661 (15)0.0518 (6)
H10.53680.81800.31030.062*
N30.46812 (18)0.70826 (19)0.46926 (16)0.0530 (6)
C10.25816 (19)0.90302 (19)0.59303 (15)0.0384 (6)
C20.2594 (2)0.98296 (19)0.53090 (16)0.0398 (6)
H20.27051.05220.54760.048*
C30.24456 (19)0.96036 (18)0.44548 (15)0.0368 (6)
H30.24701.01410.40500.044*
C40.22603 (17)0.85807 (18)0.41959 (15)0.0327 (5)
C50.22330 (18)0.77832 (18)0.48013 (15)0.0362 (6)
H50.21050.70950.46310.043*
C60.2394 (2)0.80063 (19)0.56551 (15)0.0392 (6)
H60.23780.74630.60550.047*
C70.49343 (18)0.7937 (2)0.42682 (17)0.0441 (7)
C80.4824 (3)0.6141 (3)0.4154 (2)0.0657 (9)
H8A0.42410.57030.41490.079*
H8B0.53770.57260.43510.079*
C90.5021 (3)0.6610 (3)0.3270 (2)0.0604 (8)
H9A0.56040.63070.30130.073*
H9B0.44680.65060.28890.073*
C100.49700 (19)0.8996 (2)0.46426 (16)0.0446 (7)
C110.5064 (2)0.9132 (2)0.55335 (17)0.0513 (7)
H110.51050.85460.58900.062*
C120.4905 (2)0.9878 (2)0.41216 (17)0.0514 (7)
H120.48390.97960.35320.062*
U11U22U33U12U13U23
S10.0514 (5)0.0491 (4)0.0264 (4)−0.0001 (3)0.0007 (3)−0.0023 (3)
O10.0604 (14)0.1066 (17)0.0396 (12)−0.0006 (13)0.0178 (10)0.0025 (11)
O20.114 (2)0.0497 (12)0.0407 (12)−0.0013 (12)−0.0076 (11)−0.0109 (9)
O30.0497 (12)0.0712 (13)0.0399 (10)−0.0024 (10)−0.0102 (9)0.0053 (9)
O40.0590 (14)0.128 (2)0.0449 (13)0.0017 (14)−0.0103 (10)0.0270 (13)
N10.097 (2)0.0549 (15)0.0321 (12)−0.0210 (14)−0.0048 (12)−0.0035 (10)
N20.0504 (14)0.0678 (16)0.0371 (13)−0.0018 (12)0.0070 (11)0.0087 (11)
N30.0438 (14)0.0646 (15)0.0507 (14)−0.0019 (12)0.0108 (11)0.0103 (12)
C10.0396 (14)0.0445 (13)0.0312 (13)−0.0052 (12)0.0007 (11)−0.0021 (10)
C20.0468 (16)0.0335 (12)0.0390 (14)−0.0056 (11)0.0020 (11)−0.0019 (10)
C30.0389 (14)0.0360 (12)0.0356 (13)0.0004 (11)0.0006 (11)0.0053 (10)
C40.0317 (13)0.0359 (12)0.0304 (12)0.0021 (10)0.0005 (10)0.0013 (9)
C50.0457 (15)0.0315 (12)0.0314 (13)−0.0014 (11)−0.0010 (10)−0.0005 (9)
C60.0466 (15)0.0374 (12)0.0335 (13)−0.0011 (12)−0.0016 (12)0.0068 (10)
C70.0290 (14)0.0668 (17)0.0366 (14)0.0049 (13)0.0043 (11)0.0116 (12)
C80.063 (2)0.071 (2)0.063 (2)−0.0182 (17)0.0129 (16)0.0054 (16)
C90.058 (2)0.072 (2)0.0507 (18)−0.0093 (16)0.0045 (15)−0.0012 (15)
C100.0330 (14)0.0646 (17)0.0361 (14)0.0076 (13)0.0063 (11)0.0110 (12)
C110.0509 (17)0.0654 (18)0.0377 (15)0.0104 (14)0.0065 (12)0.0146 (13)
C120.0494 (17)0.0729 (19)0.0318 (14)0.0101 (15)0.0042 (12)0.0094 (13)
S1—O21.439 (2)C3—C41.383 (3)
S1—O11.447 (2)C3—H30.9300
S1—O31.460 (2)C4—C51.385 (3)
S1—C41.760 (2)C5—C61.379 (3)
O3—H3A0.8200C5—H50.9300
O4—H4A0.8501C6—H60.9300
O4—H4B0.8501C7—C101.467 (4)
N1—C11.360 (3)C8—C91.525 (4)
N1—H1A0.8600C8—H8A0.9700
N1—H1B0.8600C8—H8B0.9700
N2—C71.317 (3)C9—H9A0.9700
N2—C91.455 (4)C9—H9B0.9700
N2—H10.8600C10—C121.387 (4)
N3—C71.317 (3)C10—C111.405 (4)
N3—C81.474 (4)C11—C12i1.368 (4)
C1—C61.393 (3)C11—H110.9300
C1—C21.403 (3)C12—C11i1.368 (4)
C2—C31.377 (3)C12—H120.9300
C2—H20.9300
O2—S1—O1114.61 (15)C4—C5—H5119.9
O2—S1—O3111.99 (14)C5—C6—C1121.2 (2)
O1—S1—O3109.17 (13)C5—C6—H6119.4
O2—S1—C4106.51 (12)C1—C6—H6119.4
O1—S1—C4107.34 (13)N3—C7—N2111.6 (3)
O3—S1—C4106.79 (11)N3—C7—C10124.3 (2)
S1—O3—H3A109.5N2—C7—C10124.1 (2)
H4A—O4—H4B120.0N3—C8—C9102.8 (3)
C1—N1—H1A120.0N3—C8—H8A111.2
C1—N1—H1B120.0C9—C8—H8A111.2
H1A—N1—H1B120.0N3—C8—H8B111.2
C7—N2—C9111.7 (2)C9—C8—H8B111.2
C7—N2—H1124.2H8A—C8—H8B109.1
C9—N2—H1124.2N2—C9—C8102.3 (2)
C7—N3—C8110.3 (2)N2—C9—H9A111.3
N1—C1—C6121.0 (2)C8—C9—H9A111.3
N1—C1—C2121.2 (2)N2—C9—H9B111.3
C6—C1—C2117.7 (2)C8—C9—H9B111.3
C3—C2—C1121.0 (2)H9A—C9—H9B109.2
C3—C2—H2119.5C12—C10—C11119.0 (3)
C1—C2—H2119.5C12—C10—C7120.4 (2)
C2—C3—C4120.3 (2)C11—C10—C7120.6 (2)
C2—C3—H3119.8C12i—C11—C10120.3 (3)
C4—C3—H3119.8C12i—C11—H11119.9
C3—C4—C5119.5 (2)C10—C11—H11119.9
C3—C4—S1120.81 (18)C11i—C12—C10120.7 (3)
C5—C4—S1119.67 (18)C11i—C12—H12119.7
C6—C5—C4120.2 (2)C10—C12—H12119.7
C6—C5—H5119.9
D—H···AD—HH···AD···AD—H···A
O3—H3A···O40.822.002.809 (3)168
N1—H1A···O2ii0.862.222.960 (3)145
N1—H1B···O3iii0.862.433.200 (3)150
N1—H1B···O1iii0.862.463.170 (4)141
N2—H1···O3iv0.862.072.897 (3)161
O4—H4A···N3v0.852.082.760 (3)136
O4—H4B···O1vi0.852.202.817 (3)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O40.822.002.809 (3)168
N1—H1A⋯O2i0.862.222.960 (3)145
N1—H1B⋯O3ii0.862.433.200 (3)150
N1—H1B⋯O1ii0.862.463.170 (4)141
N2—H1⋯O3iii0.862.072.897 (3)161
O4—H4A⋯N3iv0.852.082.760 (3)136
O4—H4B⋯O1v0.852.202.817 (3)130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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