Literature DB >> 21522956

2,2'-(p-Phenyl-ene)bis-(4,5-dihydro-1H-imidazol-3-ium) bis-(3-nitro-benzoate).

Xiu-Mei Song, Jun-Jun Li, Xin-Hua Liu, Chun-Xia Ren, Shao-Ming Shang.   

Abstract

In the title compound, C(12)H(16)N(4) (+)·2C(7)H(4)NO(4) (-), the complete 2,2'-(p-phenyl-ene)bis-(4,5-dihydro-1H-imidazol-3-ium) (bib) dication is generated by crystallographic inversion symmetry. The bib cations reside on crystallographic inversion centers, which coincide with the centroids of the respective benzene rings. In the cation, the imidazole ring adopts an envelop conformation with the flap atom displaced by 0.082 (3) Å from the plane through the other ring atoms. In the crystal, the cations and anions are linked through inter-molecular N-H⋯O hydrogen bonds, forming chains running along the a axis. C-H⋯O inter-actions also occur. Weak π-π contacts between the imidazole rings of bib and between the benzene rings of NB [centroid-centroid distances = 3.501 (1) and 3.281 (2) Å, respectively] may further stabilize the structure.

Entities:  

Year:  2011        PMID: 21522956      PMCID: PMC3051745          DOI: 10.1107/S1600536810053341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to supra­molecular inter­actions, see: Jeffrey (1997 ▶). For the structures of metal complexes with imidazole ligands reported by our group, see: Ren, Ye, He et al. (2004 ▶); Ren, Ye, Zhu et al. (2004 ▶); Ren et al. (2007 ▶, 2009 ▶).

Experimental

Crystal data

C12H16N4 2+·2C7H4NO4 M = 548.51 Triclinic, a = 6.9882 (12) Å b = 7.4165 (12) Å c = 13.233 (2) Å α = 81.343 (3)° β = 82.443 (3)° γ = 62.699 (2)° V = 600.96 (17) Å3 Z = 1 Mo Kα radiation μ = 0.12 mm−1 T = 273 K 0.67 × 0.55 × 0.42 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.927, T max = 0.953 3714 measured reflections 2575 independent reflections 1676 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.151 S = 1.07 2575 reflections 181 parameters 1 restraint H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008) ▶; program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) ▶; molecular graphics: SHELXTL (Sheldrick, 2008) ▶; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053341/ds2078sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053341/ds2078Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N42+·2C7H4NO4V = 600.96 (17) Å3
Mr = 548.51Z = 1
Triclinic, P1F(000) = 286
Hall symbol: -P 1Dx = 1.516 Mg m3
a = 6.9882 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.4165 (12) ŵ = 0.12 mm1
c = 13.233 (2) ÅT = 273 K
α = 81.343 (3)°Block, colorless
β = 82.443 (3)°0.67 × 0.55 × 0.42 mm
γ = 62.699 (2)°
Bruker SMART APEX CCD area-detector diffractometer2575 independent reflections
Radiation source: fine-focus sealed tube1676 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 27.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −8→8
Tmin = 0.927, Tmax = 0.953k = −9→9
3714 measured reflectionsl = −16→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0613P)2 + 0.1694P] where P = (Fo2 + 2Fc2)/3
2575 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.20 e Å3
1 restraintΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7607 (4)0.1903 (4)0.18562 (17)0.0483 (6)
H1A0.73980.25920.24580.058*
H1B0.68390.10750.19810.058*
C20.6871 (4)0.3430 (3)0.09029 (18)0.0492 (6)
H2A0.59610.31470.05210.059*
H2B0.60930.48200.10830.059*
C31.0544 (3)0.1481 (3)0.07401 (15)0.0383 (5)
C41.2831 (3)0.0707 (3)0.03509 (15)0.0373 (5)
C51.3404 (3)0.1420 (3)−0.06192 (15)0.0414 (5)
H51.23370.2373−0.10340.050*
C61.5554 (4)0.0716 (3)−0.09660 (15)0.0416 (5)
H61.59250.1195−0.16150.050*
C70.1900 (4)0.5421 (5)0.2448 (2)0.0620 (8)
C80.2163 (3)0.3932 (3)0.33993 (16)0.0437 (5)
C90.1925 (4)0.2191 (4)0.33805 (19)0.0529 (6)
H90.16910.18870.27650.064*
C100.2027 (4)0.0885 (4)0.4264 (2)0.0639 (7)
H100.1849−0.02750.42390.077*
C110.2391 (4)0.1307 (4)0.5170 (2)0.0620 (7)
H110.24450.04520.57690.074*
C120.2671 (3)0.3009 (4)0.51797 (16)0.0507 (6)
C130.2561 (3)0.4345 (3)0.43168 (17)0.0462 (5)
H130.27500.54970.43500.055*
N10.8925 (3)0.3081 (3)0.03187 (14)0.0482 (5)
H10.90550.3822−0.02260.058*
N20.9901 (3)0.0671 (3)0.15833 (13)0.0438 (5)
H21.0721−0.04390.19300.053*
N30.3060 (4)0.3471 (5)0.61616 (18)0.0776 (8)
O10.1555 (3)0.4959 (3)0.16467 (14)0.0884 (7)
O20.2025 (3)0.7013 (3)0.25649 (18)0.0916 (8)
O30.3241 (4)0.5037 (6)0.6153 (2)0.1100 (10)
O40.3135 (4)0.2288 (5)0.69216 (16)0.1205 (11)
U11U22U33U12U13U23
C10.0495 (13)0.0543 (13)0.0410 (12)−0.0242 (11)−0.0023 (10)−0.0025 (10)
C20.0456 (13)0.0468 (12)0.0473 (13)−0.0152 (10)−0.0034 (10)−0.0009 (10)
C30.0477 (12)0.0387 (10)0.0286 (10)−0.0187 (9)−0.0089 (9)−0.0010 (8)
C40.0446 (12)0.0356 (10)0.0298 (10)−0.0160 (9)−0.0068 (8)−0.0011 (8)
C50.0472 (12)0.0380 (11)0.0323 (11)−0.0142 (9)−0.0099 (9)0.0053 (8)
C60.0516 (13)0.0424 (11)0.0273 (10)−0.0197 (10)−0.0045 (9)0.0040 (8)
C70.0410 (13)0.0717 (18)0.0494 (16)−0.0137 (12)−0.0021 (11)0.0233 (13)
C80.0359 (11)0.0477 (12)0.0367 (12)−0.0129 (9)−0.0031 (9)0.0074 (9)
C90.0513 (14)0.0599 (15)0.0463 (14)−0.0226 (11)−0.0085 (11)−0.0052 (11)
C100.0610 (16)0.0510 (14)0.080 (2)−0.0292 (13)−0.0097 (14)0.0104 (13)
C110.0513 (15)0.0686 (17)0.0530 (16)−0.0235 (13)−0.0059 (12)0.0225 (13)
C120.0350 (12)0.0701 (16)0.0336 (12)−0.0131 (11)−0.0033 (9)−0.0013 (11)
C130.0362 (11)0.0487 (12)0.0484 (13)−0.0153 (10)−0.0014 (9)−0.0037 (10)
N10.0481 (11)0.0478 (10)0.0372 (10)−0.0146 (9)−0.0047 (8)0.0072 (8)
N20.0464 (10)0.0434 (10)0.0365 (10)−0.0181 (8)−0.0060 (8)0.0062 (8)
N30.0438 (13)0.124 (2)0.0481 (14)−0.0212 (14)−0.0029 (10)−0.0174 (15)
O10.0837 (14)0.1023 (16)0.0365 (10)−0.0115 (12)−0.0080 (9)0.0177 (10)
O20.0766 (14)0.0759 (14)0.1167 (19)−0.0418 (12)−0.0346 (12)0.0561 (13)
O30.0816 (17)0.173 (3)0.0934 (19)−0.0593 (18)0.0042 (13)−0.0671 (19)
O40.0984 (18)0.183 (3)0.0363 (12)−0.0305 (18)−0.0134 (11)0.0122 (15)
C1—N21.462 (3)C7—O21.257 (4)
C1—C21.531 (3)C7—C81.514 (3)
C1—H1A0.9700C8—C91.380 (3)
C1—H1B0.9700C8—C131.387 (3)
C2—N11.468 (3)C9—C101.388 (3)
C2—H2A0.9700C9—H90.9300
C2—H2B0.9700C10—C111.367 (4)
C3—N21.312 (3)C10—H100.9300
C3—N11.317 (3)C11—C121.366 (4)
C3—C41.476 (3)C11—H110.9300
C4—C6i1.393 (3)C12—C131.380 (3)
C4—C51.394 (3)C12—N31.481 (3)
C5—C61.383 (3)C13—H130.9300
C5—H50.9300N1—H10.8600
C6—C4i1.393 (3)N2—H20.8600
C6—H60.9300N3—O41.221 (3)
C7—O11.246 (4)N3—O31.222 (4)
N2—C1—C2102.53 (17)C9—C8—C13118.9 (2)
N2—C1—H1A111.3C9—C8—C7120.8 (2)
C2—C1—H1A111.3C13—C8—C7120.2 (2)
N2—C1—H1B111.3C8—C9—C10121.2 (2)
C2—C1—H1B111.3C8—C9—H9119.4
H1A—C1—H1B109.2C10—C9—H9119.4
N1—C2—C1102.37 (17)C11—C10—C9119.9 (2)
N1—C2—H2A111.3C11—C10—H10120.1
C1—C2—H2A111.3C9—C10—H10120.1
N1—C2—H2B111.3C12—C11—C10118.7 (2)
C1—C2—H2B111.3C12—C11—H11120.7
H2A—C2—H2B109.2C10—C11—H11120.7
N2—C3—N1111.85 (19)C11—C12—C13122.8 (2)
N2—C3—C4122.98 (18)C11—C12—N3118.7 (2)
N1—C3—C4125.13 (18)C13—C12—N3118.4 (3)
C6i—C4—C5119.30 (19)C12—C13—C8118.5 (2)
C6i—C4—C3119.93 (18)C12—C13—H13120.7
C5—C4—C3120.75 (18)C8—C13—H13120.7
C6—C5—C4120.20 (19)C3—N1—C2110.95 (18)
C6—C5—H5119.9C3—N1—H1124.5
C4—C5—H5119.9C2—N1—H1124.5
C5—C6—C4i120.50 (19)C3—N2—C1111.14 (17)
C5—C6—H6119.7C3—N2—H2124.4
C4i—C6—H6119.7C1—N2—H2124.4
O1—C7—O2127.2 (2)O4—N3—O3124.9 (3)
O1—C7—C8117.2 (3)O4—N3—C12117.8 (3)
O2—C7—C8115.6 (3)O3—N3—C12117.3 (3)
D—H···AD—HH···AD···AD—H···A
C6—H6···O2ii0.932.483.283 (3)144
N1—H1···O1iii0.861.972.763 (3)153
N2—H2···O2iv0.861.802.646 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O2i0.932.483.283 (3)144
N1—H1⋯O1ii0.861.972.763 (3)153
N2—H2⋯O2iii0.861.802.646 (3)166

Symmetry codes: (i) ; (ii) ; (iii) .

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