Literature DB >> 21583605

3,4,5-Trihydr-oxy-N'-[(1-methyl-1H-indol-2-yl)methyl-idene]benzohydrazide.

Hamid Khaledi, Siti Munirah Saharin, Hapipah Mohd Ali, Ward T Robinson, Mahmood A Abdulla.   

Abstract

The structure of the title compound, C(17)H(15)N(3)O(4), displays inter-molecular O-H⋯N and O-H⋯O hydrogen bonding between adjacent mol-ecules. Intra-molecular O-H⋯O hydrogen bonds also occur. The molecule is essentially planar with a deviation of 0.090 (1) Å from the best plane running through the connected ring systems.

Entities:  

Year:  2009        PMID: 21583605      PMCID: PMC2977291          DOI: 10.1107/S1600536809027032

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds see: Khaledi et al. (2008a ▶,b ▶, 2009 ▶).

Experimental

Crystal data

C17H15N3O4 M = 325.32 Monoclinic, a = 9.0839 (2) Å b = 13.1684 (3) Å c = 12.4414 (3) Å β = 104.2740 (10)° V = 1442.30 (6) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.49 × 0.16 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.948, T max = 0.991 10177 measured reflections 4070 independent reflections 3153 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.127 S = 0.99 4070 reflections 221 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027032/hg2532sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027032/hg2532Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N3O4F(000) = 680
Mr = 325.32Dx = 1.498 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3739 reflections
a = 9.0839 (2) Åθ = 2.3–30.4°
b = 13.1684 (3) ŵ = 0.11 mm1
c = 12.4414 (3) ÅT = 100 K
β = 104.274 (1)°Block, green
V = 1442.30 (6) Å30.49 × 0.16 × 0.09 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4070 independent reflections
Radiation source: fine-focus sealed tube3153 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scansθmax = 30.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→12
Tmin = 0.948, Tmax = 0.991k = −18→18
10177 measured reflectionsl = −17→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0672P)2 + 0.9156P] where P = (Fo2 + 2Fc2)/3
4070 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.47487 (13)0.36671 (9)0.05923 (10)0.0132 (2)
H1N0.46550.3333−0.00340.016*
N20.38051 (13)0.44784 (9)0.06479 (10)0.0134 (2)
N30.06173 (13)0.56577 (9)−0.13005 (10)0.0151 (2)
O10.99391 (12)0.12533 (8)0.33141 (8)0.0165 (2)
H1O1.02190.06450.33130.025*
O20.98618 (11)0.01716 (7)0.13104 (8)0.0149 (2)
H2O0.9766−0.03050.17370.022*
O30.77044 (12)0.07206 (8)−0.05744 (8)0.0189 (2)
H3O0.84730.0349−0.05060.028*
O40.59664 (13)0.38379 (8)0.23996 (8)0.0199 (2)
C10.04811 (18)0.51469 (13)−0.23489 (13)0.0226 (3)
H1A−0.04260.5393−0.28870.034*
H1B0.03930.4413−0.22470.034*
H1C0.13830.5288−0.26230.034*
C2−0.02892 (15)0.64421 (11)−0.11137 (12)0.0155 (3)
C3−0.15129 (16)0.69271 (11)−0.18421 (13)0.0192 (3)
H3−0.18340.6736−0.26000.023*
C4−0.22304 (17)0.76936 (12)−0.14091 (14)0.0213 (3)
H4−0.30590.8039−0.18830.026*
C5−0.17667 (17)0.79760 (11)−0.02853 (14)0.0219 (3)
H5−0.22910.8505−0.00160.026*
C6−0.05636 (17)0.74988 (11)0.04323 (13)0.0195 (3)
H6−0.02590.76920.11910.023*
C70.02010 (16)0.67213 (11)0.00177 (12)0.0163 (3)
C80.14341 (16)0.60759 (11)0.05098 (12)0.0162 (3)
H80.19970.60850.12630.019*
C90.16628 (15)0.54349 (10)−0.03077 (11)0.0137 (3)
C100.27384 (15)0.46201 (10)−0.02389 (11)0.0134 (3)
H100.26620.4180−0.08560.016*
C110.58127 (15)0.33924 (10)0.15038 (11)0.0129 (3)
C120.68091 (14)0.25165 (10)0.13972 (11)0.0123 (3)
C130.78798 (15)0.22437 (10)0.23633 (11)0.0132 (3)
H130.79170.25970.30350.016*
C140.88907 (15)0.14590 (10)0.23472 (11)0.0128 (3)
C150.88441 (15)0.09305 (10)0.13689 (11)0.0122 (2)
C160.77684 (15)0.12083 (10)0.04008 (11)0.0135 (3)
C170.67475 (15)0.19925 (10)0.04105 (11)0.0143 (3)
H170.60140.2171−0.02490.017*
U11U22U33U12U13U23
N10.0140 (5)0.0112 (5)0.0140 (5)0.0024 (4)0.0029 (4)−0.0013 (4)
N20.0120 (5)0.0110 (5)0.0173 (5)0.0015 (4)0.0040 (4)0.0006 (4)
N30.0132 (5)0.0141 (5)0.0174 (6)0.0019 (4)0.0028 (4)0.0011 (4)
O10.0180 (5)0.0172 (5)0.0121 (4)0.0047 (4)−0.0006 (4)0.0011 (4)
O20.0183 (5)0.0122 (5)0.0157 (5)0.0049 (4)0.0069 (4)0.0039 (4)
O30.0196 (5)0.0214 (5)0.0139 (5)0.0075 (4)0.0010 (4)−0.0046 (4)
O40.0232 (5)0.0203 (5)0.0151 (5)0.0068 (4)0.0027 (4)−0.0035 (4)
C10.0219 (7)0.0248 (8)0.0192 (7)0.0035 (6)0.0014 (6)−0.0027 (6)
C20.0135 (6)0.0124 (6)0.0219 (7)0.0001 (5)0.0066 (5)0.0025 (5)
C30.0148 (6)0.0182 (7)0.0247 (7)0.0009 (5)0.0050 (5)0.0049 (6)
C40.0151 (6)0.0168 (7)0.0325 (8)0.0031 (5)0.0070 (6)0.0071 (6)
C50.0185 (7)0.0134 (6)0.0370 (9)0.0020 (5)0.0128 (6)0.0013 (6)
C60.0193 (7)0.0154 (7)0.0263 (8)−0.0008 (5)0.0101 (6)−0.0018 (5)
C70.0149 (6)0.0129 (6)0.0220 (7)−0.0004 (5)0.0068 (5)0.0009 (5)
C80.0155 (6)0.0142 (6)0.0197 (7)0.0003 (5)0.0061 (5)0.0004 (5)
C90.0122 (6)0.0123 (6)0.0165 (6)−0.0002 (5)0.0034 (5)0.0022 (5)
C100.0125 (6)0.0126 (6)0.0155 (6)−0.0008 (5)0.0042 (5)−0.0007 (5)
C110.0134 (6)0.0121 (6)0.0135 (6)0.0001 (5)0.0042 (5)0.0011 (5)
C120.0122 (6)0.0116 (6)0.0131 (6)0.0007 (4)0.0031 (5)0.0013 (5)
C130.0148 (6)0.0131 (6)0.0120 (6)0.0008 (5)0.0034 (5)−0.0004 (5)
C140.0131 (6)0.0132 (6)0.0117 (6)0.0001 (5)0.0022 (4)0.0029 (5)
C150.0120 (6)0.0111 (6)0.0142 (6)0.0012 (4)0.0042 (5)0.0020 (5)
C160.0147 (6)0.0142 (6)0.0120 (6)0.0006 (5)0.0038 (5)−0.0016 (5)
C170.0142 (6)0.0147 (6)0.0129 (6)0.0025 (5)0.0013 (5)0.0007 (5)
N1—C111.3455 (17)C4—C51.407 (2)
N1—N21.3821 (15)C4—H40.9500
N1—H1N0.8800C5—C61.380 (2)
N2—C101.2900 (17)C5—H50.9500
N3—C21.3760 (18)C6—C71.405 (2)
N3—C91.3912 (17)C6—H60.9500
N3—C11.4455 (19)C7—C81.419 (2)
O1—C141.3647 (16)C8—C91.376 (2)
O1—H1O0.8400C8—H80.9500
O2—C151.3755 (16)C9—C101.4394 (19)
O2—H2O0.8400C10—H100.9500
O3—C161.3613 (16)C11—C121.4921 (18)
O3—H3O0.8400C12—C131.3941 (18)
O4—C111.2365 (17)C12—C171.3972 (18)
C1—H1A0.9800C13—C141.3859 (18)
C1—H1B0.9800C13—H130.9500
C1—H1C0.9800C14—C151.3936 (18)
C2—C31.403 (2)C15—C161.3995 (18)
C2—C71.416 (2)C16—C171.3900 (19)
C3—C41.381 (2)C17—H170.9500
C3—H30.9500
C11—N1—N2119.41 (11)C6—C7—C8133.41 (14)
C11—N1—H1N120.3C2—C7—C8107.14 (12)
N2—N1—H1N120.3C9—C8—C7107.18 (13)
C10—N2—N1114.41 (11)C9—C8—H8126.4
C2—N3—C9108.32 (12)C7—C8—H8126.4
C2—N3—C1125.46 (12)C8—C9—N3109.41 (12)
C9—N3—C1126.22 (12)C8—C9—C10129.58 (13)
C14—O1—H1O109.5N3—C9—C10120.98 (12)
C15—O2—H2O109.5N2—C10—C9120.95 (13)
C16—O3—H3O109.5N2—C10—H10119.5
N3—C1—H1A109.5C9—C10—H10119.5
N3—C1—H1B109.5O4—C11—N1122.01 (12)
H1A—C1—H1B109.5O4—C11—C12120.71 (12)
N3—C1—H1C109.5N1—C11—C12117.28 (12)
H1A—C1—H1C109.5C13—C12—C17119.91 (12)
H1B—C1—H1C109.5C13—C12—C11115.60 (12)
N3—C2—C3130.13 (14)C17—C12—C11124.48 (12)
N3—C2—C7107.95 (12)C14—C13—C12120.23 (12)
C3—C2—C7121.92 (13)C14—C13—H13119.9
C4—C3—C2117.12 (14)C12—C13—H13119.9
C4—C3—H3121.4O1—C14—C13117.13 (12)
C2—C3—H3121.4O1—C14—C15122.35 (12)
C3—C4—C5121.76 (14)C13—C14—C15120.49 (12)
C3—C4—H4119.1O2—C15—C14122.20 (12)
C5—C4—H4119.1O2—C15—C16118.70 (12)
C6—C5—C4121.17 (14)C14—C15—C16119.04 (12)
C6—C5—H5119.4O3—C16—C17118.44 (12)
C4—C5—H5119.4O3—C16—C15120.73 (12)
C5—C6—C7118.60 (15)C17—C16—C15120.83 (12)
C5—C6—H6120.7C16—C17—C12119.49 (12)
C7—C6—H6120.7C16—C17—H17120.3
C6—C7—C2119.43 (13)C12—C17—H17120.3
C11—N1—N2—C10−173.94 (12)C8—C9—C10—N2−9.1 (2)
C9—N3—C2—C3−179.04 (14)N3—C9—C10—N2172.91 (13)
C1—N3—C2—C30.1 (2)N2—N1—C11—O40.8 (2)
C9—N3—C2—C70.29 (15)N2—N1—C11—C12−179.57 (11)
C1—N3—C2—C7179.39 (13)O4—C11—C12—C130.73 (19)
N3—C2—C3—C4179.14 (14)N1—C11—C12—C13−178.95 (12)
C7—C2—C3—C4−0.1 (2)O4—C11—C12—C17−177.78 (13)
C2—C3—C4—C5−0.4 (2)N1—C11—C12—C172.5 (2)
C3—C4—C5—C60.3 (2)C17—C12—C13—C140.5 (2)
C4—C5—C6—C70.2 (2)C11—C12—C13—C14−178.13 (12)
C5—C6—C7—C2−0.7 (2)C12—C13—C14—O1177.99 (12)
C5—C6—C7—C8−178.83 (15)C12—C13—C14—C15−0.4 (2)
N3—C2—C7—C6−178.74 (13)O1—C14—C15—O2−0.6 (2)
C3—C2—C7—C60.7 (2)C13—C14—C15—O2177.66 (12)
N3—C2—C7—C8−0.15 (16)O1—C14—C15—C16−177.82 (12)
C3—C2—C7—C8179.24 (13)C13—C14—C15—C160.4 (2)
C6—C7—C8—C9178.27 (16)O2—C15—C16—O31.6 (2)
C2—C7—C8—C9−0.04 (16)C14—C15—C16—O3178.93 (12)
C7—C8—C9—N30.22 (16)O2—C15—C16—C17−177.94 (12)
C7—C8—C9—C10−177.98 (14)C14—C15—C16—C17−0.6 (2)
C2—N3—C9—C8−0.32 (16)O3—C16—C17—C12−178.85 (12)
C1—N3—C9—C8−179.42 (13)C15—C16—C17—C120.7 (2)
C2—N3—C9—C10178.06 (12)C13—C12—C17—C16−0.6 (2)
C1—N3—C9—C10−1.0 (2)C11—C12—C17—C16177.82 (13)
N1—N2—C10—C9179.93 (12)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O4i0.841.802.6119 (14)164
O1—H1O···N2i0.842.062.7759 (15)142
O3—H3O···O2ii0.842.122.8469 (14)144
O1—H1O···O20.842.512.8570 (14)106
O3—H3O···O20.842.312.7560 (14)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O4i0.841.802.6119 (14)164
O1—H1O⋯N2i0.842.062.7759 (15)142
O3—H3O⋯O2ii0.842.122.8469 (14)144
O1—H1O⋯O20.842.512.8570 (14)106
O3—H3O⋯O20.842.312.7560 (14)113

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[(5-Chloro-1H-indol-3-yl)methyl-ene]-3,4,5-trihydroxy-benzohydrazide.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

3.  N'-(5-Bromo-1H-indol-3-ylmethyl-idene)-3,4,5-trihydroxy-benzohydrazide.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11

4.  3,4,5-Trihydr-oxy-N'-(1H-indol-3-yl-methyl-idene)benzohydrazide penta-hydrate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29
  4 in total
  10 in total

1.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

2.  (E)-N'-[4-(Dimethyl-amino)-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

3.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-hy-droxy-3-meth-oxy-benzohydrazide methanol solvate.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

4.  3,4,5-Trihydr-oxy-N'-(1H-indol-2-ylmethyl-idene)benzohydrazide-1H-indole-2-carbaldehyde azine-methanol (2/1/2).

Authors:  Hamid Khaledi; Abeer A Alhadi; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

5.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-3-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

6.  N'-(2-Chloro-benzyl-idene)-2-fluoro-benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

7.  (E)-N'-[(2-Hydroxynaphthalen-1-yl)methylidene]nicotinohydrazide.

Authors:  Shi-Yong Liu; Qin-Qin Guo; Yu-Mei Hao; Xiao-Ling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-22

8.  (E)-N'-(4-Hy-droxy-benzyl-idene)-2-nitro-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

9.  N'-(2-Chloro-benzyl-idene)-2-methyl-benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

10.  4-Chloro-N'-(3,5-dibromo-2-hy-droxy-benzyl-idene)benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28
  10 in total

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