Literature DB >> 21580972

N'-(5-Bromo-1H-indol-3-ylmethyl-idene)-3,4,5-trihydroxy-benzohydrazide.

Hamid Khaledi1, Hapipah Mohd Ali, Seik Weng Ng.   

Abstract

The two aromatic parts of the title mol-ecule, C(16)H(12)BrN(3)O(4), are connected through a conjugated -CH=N-NH-C(O)- fragment to furnish an almost planar mol-ecule. Adjacent mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network. An intramolecular O-H⋯O link also occurs.

Entities:  

Year:  2008        PMID: 21580972      PMCID: PMC2959687          DOI: 10.1107/S1600536808031991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other Schiff bases derived by condensing 5-bromo-1H-indole-3-carbaldehyde with aroylhydrazines, see: Ali et al. (2005a ▶,b ▶,c ▶).

Experimental

Crystal data

C16H12BrN3O4 M = 390.20 Monoclinic, a = 9.6454 (2) Å b = 14.9694 (4) Å c = 10.3845 (2) Å β = 97.390 (1)° V = 1486.92 (6) Å3 Z = 4 Mo Kα radiation μ = 2.79 mm−1 T = 100 (2) K 0.40 × 0.25 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.401, T max = 0.768 10182 measured reflections 3403 independent reflections 2786 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.078 S = 1.02 3403 reflections 220 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808031991/tk2310sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031991/tk2310Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12BrN3O4F(000) = 784
Mr = 390.20Dx = 1.743 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3960 reflections
a = 9.6454 (2) Åθ = 2.4–28.2°
b = 14.9694 (4) ŵ = 2.79 mm1
c = 10.3845 (2) ÅT = 100 K
β = 97.390 (1)°Block, orange
V = 1486.92 (6) Å30.40 × 0.25 × 0.10 mm
Z = 4
Bruker SMART APEX diffractometer3403 independent reflections
Radiation source: fine-focus sealed tube2786 reflections with I > 2σ(I)
graphiteRint = 0.024
ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→11
Tmin = 0.401, Tmax = 0.768k = −19→19
10182 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0419P)2 + 0.9663P] where P = (Fo2 + 2Fc2)/3
3403 reflections(Δ/σ)max = 0.003
220 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br11.00401 (2)1.090710 (16)0.25205 (2)0.02243 (8)
O10.69032 (15)0.83598 (10)0.56939 (13)0.0157 (3)
O20.64359 (15)0.62930 (10)0.94165 (13)0.0163 (3)
H2O0.59870.59990.99140.024*
O30.37031 (15)0.59355 (9)0.93388 (13)0.0133 (3)
H3O0.30850.61780.97210.020*
O40.17544 (15)0.67374 (10)0.73325 (13)0.0141 (3)
H4O0.15690.64210.79560.021*
N10.46882 (18)0.86863 (11)0.48158 (15)0.0134 (3)
H1N0.37880.86190.48520.016*
N20.51457 (18)0.92346 (11)0.38712 (16)0.0129 (3)
N30.40143 (19)1.10565 (11)0.03097 (16)0.0151 (4)
H3N0.35571.1326−0.03690.018*
C10.5056 (2)0.76400 (13)0.66032 (18)0.0123 (4)
C20.6012 (2)0.72451 (13)0.75620 (18)0.0129 (4)
H20.69840.73610.75980.016*
C30.5519 (2)0.66829 (13)0.84567 (18)0.0128 (4)
C40.4097 (2)0.65084 (13)0.84261 (18)0.0116 (4)
C50.3160 (2)0.68919 (13)0.74520 (18)0.0122 (4)
C60.3639 (2)0.74523 (13)0.65414 (18)0.0124 (4)
H60.29960.77090.58730.015*
C70.5628 (2)0.82603 (13)0.56719 (18)0.0128 (4)
C80.4168 (2)0.96589 (13)0.31563 (19)0.0133 (4)
H80.32290.95870.33240.016*
C90.4446 (2)1.02350 (13)0.21187 (19)0.0125 (4)
C100.3424 (2)1.05580 (14)0.11812 (19)0.0150 (4)
H100.24511.04470.11520.018*
C110.5760 (2)1.05663 (13)0.17868 (18)0.0121 (4)
C120.7151 (2)1.05011 (13)0.23622 (18)0.0135 (4)
H120.73991.01770.31440.016*
C130.8147 (2)1.09278 (13)0.1744 (2)0.0152 (4)
C140.7829 (2)1.14153 (14)0.0594 (2)0.0172 (4)
H140.85581.16850.01950.021*
C150.6456 (2)1.15045 (14)0.00394 (19)0.0158 (4)
H150.62151.1845−0.07280.019*
C160.5443 (2)1.10761 (13)0.06493 (19)0.0138 (4)
U11U22U33U12U13U23
Br10.01187 (12)0.03131 (14)0.02403 (13)−0.00169 (9)0.00198 (8)0.00285 (9)
O10.0119 (7)0.0181 (7)0.0178 (7)−0.0008 (6)0.0047 (6)0.0012 (6)
O20.0100 (7)0.0235 (8)0.0151 (7)−0.0005 (6)0.0010 (6)0.0048 (6)
O30.0120 (7)0.0162 (7)0.0122 (6)0.0003 (6)0.0039 (5)0.0011 (5)
O40.0101 (7)0.0174 (7)0.0145 (7)−0.0035 (6)0.0005 (5)0.0038 (5)
N10.0114 (9)0.0144 (8)0.0152 (8)−0.0019 (7)0.0050 (7)0.0021 (7)
N20.0149 (9)0.0123 (8)0.0125 (7)−0.0020 (7)0.0051 (7)−0.0006 (6)
N30.0158 (9)0.0156 (9)0.0133 (8)0.0028 (7)−0.0004 (7)−0.0001 (6)
C10.0123 (10)0.0122 (9)0.0133 (9)−0.0012 (8)0.0044 (7)−0.0035 (7)
C20.0093 (9)0.0150 (9)0.0150 (9)0.0001 (8)0.0031 (7)−0.0024 (8)
C30.0116 (10)0.0149 (10)0.0116 (8)0.0016 (8)−0.0002 (7)−0.0027 (7)
C40.0133 (10)0.0111 (9)0.0109 (8)−0.0017 (7)0.0035 (7)−0.0017 (7)
C50.0101 (9)0.0126 (9)0.0143 (9)−0.0010 (8)0.0025 (7)−0.0042 (7)
C60.0119 (10)0.0124 (9)0.0127 (9)0.0006 (8)0.0009 (7)0.0003 (7)
C70.0148 (10)0.0114 (9)0.0131 (9)−0.0005 (8)0.0046 (8)−0.0044 (7)
C80.0117 (10)0.0133 (9)0.0155 (9)−0.0012 (8)0.0042 (7)−0.0031 (8)
C90.0131 (10)0.0104 (9)0.0141 (9)0.0005 (8)0.0018 (8)−0.0029 (7)
C100.0144 (10)0.0146 (9)0.0162 (9)0.0008 (8)0.0027 (8)−0.0021 (8)
C110.0148 (10)0.0099 (9)0.0119 (8)0.0009 (8)0.0032 (7)−0.0025 (7)
C120.0165 (10)0.0125 (9)0.0116 (9)0.0023 (8)0.0028 (7)−0.0013 (7)
C130.0132 (10)0.0146 (10)0.0176 (9)0.0000 (8)0.0017 (8)−0.0028 (8)
C140.0194 (11)0.0149 (10)0.0185 (10)−0.0026 (9)0.0072 (8)−0.0002 (8)
C150.0233 (11)0.0116 (9)0.0128 (9)0.0002 (8)0.0035 (8)0.0004 (7)
C160.0166 (10)0.0117 (9)0.0126 (9)0.0021 (8)0.0005 (8)−0.0024 (7)
Br1—C131.899 (2)C2—H20.9500
O1—C71.236 (3)C3—C41.392 (3)
O2—C31.375 (2)C4—C51.391 (3)
O2—H2O0.8400C5—C61.387 (3)
O3—C41.368 (2)C6—H60.9500
O3—H3O0.8400C8—C91.432 (3)
O4—C51.365 (2)C8—H80.9500
O4—H4O0.8400C9—C101.381 (3)
N1—C71.346 (3)C9—C111.443 (3)
N1—N21.394 (2)C10—H100.9500
N1—H1N0.8800C11—C121.401 (3)
N2—C81.290 (3)C11—C161.406 (3)
N3—C101.354 (3)C12—C131.379 (3)
N3—C161.378 (3)C12—H120.9500
N3—H3N0.8800C13—C141.400 (3)
C1—C61.388 (3)C14—C151.381 (3)
C1—C21.398 (3)C14—H140.9500
C1—C71.497 (3)C15—C161.388 (3)
C2—C31.382 (3)C15—H150.9500
C3—O2—H2O109.5O1—C7—C1120.77 (18)
C4—O3—H3O109.5N1—C7—C1116.61 (18)
C5—O4—H4O109.5N2—C8—C9122.40 (19)
C7—N1—N2119.79 (17)N2—C8—H8118.8
C7—N1—H1N120.1C9—C8—H8118.8
N2—N1—H1N120.1C10—C9—C8123.76 (19)
C8—N2—N1114.89 (17)C10—C9—C11106.28 (17)
C10—N3—C16109.48 (17)C8—C9—C11129.92 (19)
C10—N3—H3N125.3N3—C10—C9109.93 (19)
C16—N3—H3N125.3N3—C10—H10125.0
C6—C1—C2120.15 (18)C9—C10—H10125.0
C6—C1—C7122.57 (18)C12—C11—C16119.25 (18)
C2—C1—C7117.28 (18)C12—C11—C9134.17 (18)
C3—C2—C1118.93 (18)C16—C11—C9106.54 (18)
C3—C2—H2120.5C13—C12—C11117.12 (18)
C1—C2—H2120.5C13—C12—H12121.4
O2—C3—C2120.06 (18)C11—C12—H12121.4
O2—C3—C4118.49 (17)C12—C13—C14123.3 (2)
C2—C3—C4121.44 (18)C12—C13—Br1118.96 (15)
O3—C4—C3117.54 (18)C14—C13—Br1117.63 (16)
O3—C4—C5123.37 (18)C15—C14—C13119.95 (19)
C3—C4—C5119.04 (18)C15—C14—H14120.0
O4—C5—C6117.06 (17)C13—C14—H14120.0
O4—C5—C4122.77 (17)C14—C15—C16117.31 (19)
C6—C5—C4120.17 (19)C14—C15—H15121.3
C1—C6—C5120.23 (18)C16—C15—H15121.3
C1—C6—H6119.9N3—C16—C15129.25 (19)
C5—C6—H6119.9N3—C16—C11107.77 (18)
O1—C7—N1122.61 (18)C15—C16—C11122.99 (19)
C7—N1—N2—C8−175.49 (18)N2—C8—C9—C10166.76 (19)
C6—C1—C2—C3−1.3 (3)N2—C8—C9—C11−10.6 (3)
C7—C1—C2—C3178.65 (17)C16—N3—C10—C90.0 (2)
C1—C2—C3—O2−179.39 (17)C8—C9—C10—N3−177.81 (18)
C1—C2—C3—C4−0.4 (3)C11—C9—C10—N30.1 (2)
O2—C3—C4—O3−1.8 (3)C10—C9—C11—C12177.6 (2)
C2—C3—C4—O3179.23 (17)C8—C9—C11—C12−4.7 (4)
O2—C3—C4—C5−179.37 (17)C10—C9—C11—C16−0.1 (2)
C2—C3—C4—C51.7 (3)C8—C9—C11—C16177.60 (19)
O3—C4—C5—O40.9 (3)C16—C11—C12—C13−1.9 (3)
C3—C4—C5—O4178.29 (17)C9—C11—C12—C13−179.3 (2)
O3—C4—C5—C6−178.58 (18)C11—C12—C13—C140.2 (3)
C3—C4—C5—C6−1.2 (3)C11—C12—C13—Br1177.22 (14)
C2—C1—C6—C51.8 (3)C12—C13—C14—C151.6 (3)
C7—C1—C6—C5−178.16 (18)Br1—C13—C14—C15−175.44 (15)
O4—C5—C6—C1179.97 (17)C13—C14—C15—C16−1.7 (3)
C4—C5—C6—C1−0.6 (3)C10—N3—C16—C15−179.9 (2)
N2—N1—C7—O12.9 (3)C10—N3—C16—C110.0 (2)
N2—N1—C7—C1−176.32 (16)C14—C15—C16—N3179.8 (2)
C6—C1—C7—O1−174.49 (18)C14—C15—C16—C110.0 (3)
C2—C1—C7—O15.5 (3)C12—C11—C16—N3−178.04 (17)
C6—C1—C7—N14.7 (3)C9—C11—C16—N30.1 (2)
C2—C1—C7—N1−175.23 (17)C12—C11—C16—C151.8 (3)
N1—N2—C8—C9−178.50 (17)C9—C11—C16—C15179.91 (18)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O30.842.212.681 (2)116
O3—H3O···O1i0.841.762.595 (2)173
O4—H4O···N2i0.842.022.778 (2)150
N1—H1N···O2ii0.882.263.111 (2)163
N3—H3N···O4iii0.882.112.932 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O30.842.212.681 (2)116
O3—H3O⋯O1i0.841.762.595 (2)173
O4—H4O⋯N2i0.842.022.778 (2)150
N1—H1N⋯O2ii0.882.263.111 (2)163
N3—H3N⋯O4iii0.882.112.932 (2)154

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  4 in total

1.  3,4,5-Trihydr-oxy-N'-[(1-methyl-1H-indol-2-yl)methyl-idene]benzohydrazide.

Authors:  Hamid Khaledi; Siti Munirah Saharin; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

2.  N'-[(5-Chloro-1H-indol-3-yl)methyl-ene]-3,4,5-trihydroxy-benzohydrazide.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

3.  3,4,5-Trihydr-oxy-N'-(1H-indol-2-ylmethyl-idene)benzohydrazide-1H-indole-2-carbaldehyde azine-methanol (2/1/2).

Authors:  Hamid Khaledi; Abeer A Alhadi; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

4.  3,4,5-Trihydr-oxy-N'-(1H-indol-3-yl-methyl-idene)benzohydrazide penta-hydrate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29
  4 in total

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