Literature DB >> 21837138

(E)-N'-[(2-Hydroxynaphthalen-1-yl)methylidene]nicotinohydrazide.

Shi-Yong Liu, Qin-Qin Guo, Yu-Mei Hao, Xiao-Ling Wang.   

Abstract

In the mol-ecule of the title compound, C(17)H(13)N(3)O(2), the naphthyl ring system and the pyridine ring form a dihedral angle of 12.2 (3)°. An intra-molecular O-H⋯N hydrogen bond generates a six-membered ring with an S(6) ring motif. This also contributes to the relative overall near planarity of the mol-ecule [r.m.s. deviation of all 22 non-H atoms = 0.107 (5) Å]. In the crystal, mol-ecules are linked through inter-molecular N-H⋯N hydrogen bonds, forming chains along the a axis.

Entities:  

Year:  2011        PMID: 21837138      PMCID: PMC3151953          DOI: 10.1107/S1600536811023257

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal applications of hydrazone compounds, see: Hillmer et al. (2010 ▶); Zhu et al. (2009 ▶). For hydrazones we have reported previously, see: Liu & You (2010 ▶); Liu & Wang (2010 ▶). For related structures, see: Khaledi et al. (2009 ▶); Xu et al. (2009 ▶); Shafiq et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H13N3O2 M = 291.30 Orthorhombic, a = 6.253 (2) Å b = 12.335 (4) Å c = 18.511 (7) Å V = 1427.8 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.982, T max = 0.984 8787 measured reflections 1810 independent reflections 921 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.131 S = 0.99 1810 reflections 204 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023257/sj5164sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023257/sj5164Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811023257/sj5164Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13N3O2F(000) = 608
Mr = 291.30Dx = 1.355 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 536 reflections
a = 6.253 (2) Åθ = 2.6–24.5°
b = 12.335 (4) ŵ = 0.09 mm1
c = 18.511 (7) ÅT = 298 K
V = 1427.8 (9) Å3Block, colourless
Z = 40.20 × 0.20 × 0.18 mm
Bruker SMART CCD area-detector diffractometer1810 independent reflections
Radiation source: fine-focus sealed tube921 reflections with I > 2σ(I)
graphiteRint = 0.081
ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→7
Tmin = 0.982, Tmax = 0.984k = −15→14
8787 measured reflectionsl = −23→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0547P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
1810 reflectionsΔρmax = 0.13 e Å3
204 parametersΔρmin = −0.13 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.020 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7202 (5)0.4933 (3)0.16836 (14)0.0776 (10)
H10.60420.52360.16380.116*
O20.2100 (5)0.6667 (3)0.21269 (15)0.0921 (11)
N10.4016 (5)0.5735 (3)0.09932 (17)0.0550 (9)
N20.2169 (6)0.6340 (3)0.09272 (17)0.0556 (9)
N3−0.3466 (6)0.8162 (3)0.06814 (18)0.0623 (10)
C10.6656 (6)0.4675 (3)0.0409 (2)0.0458 (9)
C20.7836 (7)0.4540 (3)0.1040 (2)0.0556 (11)
C30.9784 (7)0.3984 (3)0.1031 (3)0.0682 (13)
H31.05440.38900.14590.082*
C41.0576 (7)0.3579 (3)0.0404 (3)0.0699 (13)
H41.18840.32200.04100.084*
C50.9465 (7)0.3688 (3)−0.0257 (3)0.0577 (11)
C61.0301 (8)0.3281 (3)−0.0913 (3)0.0772 (14)
H61.16250.2938−0.09140.093*
C70.9201 (10)0.3384 (4)−0.1541 (3)0.0875 (16)
H70.97710.3110−0.19680.105*
C80.7219 (9)0.3898 (4)−0.1546 (2)0.0768 (14)
H80.64670.3963−0.19780.092*
C90.6364 (7)0.4310 (3)−0.0923 (2)0.0609 (11)
H90.50340.4646−0.09370.073*
C100.7465 (7)0.4234 (3)−0.0255 (2)0.0501 (10)
C110.4700 (6)0.5284 (3)0.0414 (2)0.0498 (10)
H110.39170.5354−0.00110.060*
C120.1344 (7)0.6808 (3)0.1530 (2)0.0592 (11)
C13−0.0594 (7)0.7491 (3)0.1416 (2)0.0532 (11)
C14−0.1289 (10)0.8127 (4)0.1977 (2)0.0980 (19)
H14−0.05570.81280.24140.118*
C15−0.3062 (10)0.8761 (5)0.1888 (3)0.116 (2)
H15−0.35480.91960.22640.140*
C16−0.4116 (8)0.8747 (4)0.1241 (2)0.0704 (13)
H16−0.53430.91670.11910.085*
C17−0.1735 (7)0.7550 (3)0.0787 (2)0.0584 (11)
H17−0.12660.71290.04020.070*
H20.165 (7)0.648 (3)0.0485 (11)0.080*
U11U22U33U12U13U23
O10.085 (3)0.085 (2)0.0627 (19)0.008 (2)−0.0107 (17)0.0032 (16)
O20.088 (3)0.135 (3)0.0539 (18)0.046 (2)−0.0086 (17)−0.0062 (18)
N10.046 (2)0.0574 (19)0.062 (2)0.0066 (18)0.0041 (18)−0.0025 (18)
N20.048 (2)0.064 (2)0.055 (2)0.0080 (19)0.0020 (18)−0.0004 (18)
N30.055 (3)0.064 (2)0.068 (2)0.004 (2)0.0006 (19)−0.0009 (18)
C10.041 (2)0.041 (2)0.056 (2)−0.0007 (19)0.0009 (19)0.0080 (18)
C20.056 (3)0.048 (2)0.063 (3)−0.002 (2)−0.006 (2)0.005 (2)
C30.060 (3)0.063 (3)0.081 (3)0.006 (3)−0.019 (3)0.013 (3)
C40.047 (3)0.045 (2)0.117 (4)0.007 (2)−0.008 (3)0.011 (3)
C50.048 (3)0.038 (2)0.087 (3)−0.004 (2)0.006 (3)0.003 (2)
C60.054 (3)0.061 (3)0.117 (4)−0.006 (3)0.031 (3)−0.014 (3)
C70.092 (4)0.081 (3)0.089 (4)−0.007 (3)0.028 (3)−0.027 (3)
C80.089 (4)0.078 (3)0.064 (3)−0.007 (3)0.005 (3)−0.001 (2)
C90.066 (3)0.061 (2)0.056 (2)−0.001 (2)0.004 (2)−0.002 (2)
C100.045 (3)0.041 (2)0.064 (3)−0.002 (2)0.007 (2)0.0061 (19)
C110.050 (3)0.050 (2)0.049 (2)0.001 (2)−0.0025 (19)0.002 (2)
C120.056 (3)0.070 (3)0.052 (3)0.010 (3)0.004 (2)−0.001 (2)
C130.058 (3)0.054 (2)0.047 (2)0.008 (2)0.004 (2)0.0012 (19)
C140.122 (5)0.121 (4)0.051 (3)0.066 (4)−0.008 (3)−0.018 (3)
C150.153 (6)0.144 (5)0.052 (3)0.092 (5)0.008 (3)−0.010 (3)
C160.068 (3)0.074 (3)0.070 (3)0.020 (3)0.011 (3)0.009 (3)
C170.052 (3)0.063 (3)0.061 (3)0.003 (2)0.001 (2)−0.012 (2)
O1—C21.346 (4)C6—C71.357 (7)
O1—H10.8200C6—H60.9300
O2—C121.214 (4)C7—C81.393 (7)
N1—C111.282 (4)C7—H70.9300
N1—N21.381 (4)C8—C91.370 (6)
N2—C121.358 (5)C8—H80.9300
N2—H20.898 (10)C9—C101.417 (5)
N3—C161.326 (5)C9—H90.9300
N3—C171.334 (5)C11—H110.9300
C1—C21.392 (5)C12—C131.491 (6)
C1—C111.435 (5)C13—C171.367 (5)
C1—C101.436 (5)C13—C141.372 (5)
C2—C31.398 (6)C14—C151.366 (6)
C3—C41.357 (6)C14—H140.9300
C3—H30.9300C15—C161.368 (6)
C4—C51.414 (6)C15—H150.9300
C4—H40.9300C16—H160.9300
C5—C61.414 (6)C17—H170.9300
C5—C101.421 (5)
C2—O1—H1109.5C7—C8—H8119.7
C11—N1—N2116.1 (3)C8—C9—C10121.4 (4)
C12—N2—N1118.3 (3)C8—C9—H9119.3
C12—N2—H2122 (3)C10—C9—H9119.3
N1—N2—H2119 (3)C9—C10—C5117.2 (4)
C16—N3—C17116.2 (4)C9—C10—C1123.4 (4)
C2—C1—C11120.6 (4)C5—C10—C1119.4 (4)
C2—C1—C10119.1 (4)N1—C11—C1121.1 (4)
C11—C1—C10120.2 (4)N1—C11—H11119.4
O1—C2—C1122.9 (4)C1—C11—H11119.4
O1—C2—C3116.3 (4)O2—C12—N2122.6 (4)
C1—C2—C3120.7 (4)O2—C12—C13121.8 (4)
C4—C3—C2120.5 (4)N2—C12—C13115.6 (4)
C4—C3—H3119.7C17—C13—C14116.6 (4)
C2—C3—H3119.7C17—C13—C12125.1 (4)
C3—C4—C5121.8 (4)C14—C13—C12118.3 (4)
C3—C4—H4119.1C15—C14—C13119.6 (5)
C5—C4—H4119.1C15—C14—H14120.2
C6—C5—C4121.9 (5)C13—C14—H14120.2
C6—C5—C10119.7 (4)C14—C15—C16119.3 (5)
C4—C5—C10118.4 (4)C14—C15—H15120.4
C7—C6—C5121.0 (5)C16—C15—H15120.4
C7—C6—H6119.5N3—C16—C15122.9 (5)
C5—C6—H6119.5N3—C16—H16118.5
C6—C7—C8120.0 (5)C15—C16—H16118.5
C6—C7—H7120.0N3—C17—C13125.4 (4)
C8—C7—H7120.0N3—C17—H17117.3
C9—C8—C7120.7 (5)C13—C17—H17117.3
C9—C8—H8119.7
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.852.565 (4)146
N2—H2···N3i0.90 (1)2.20 (2)3.066 (5)161 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.852.565 (4)146
N2—H2⋯N3i0.90 (1)2.20 (2)3.066 (5)161 (4)

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Dihydr-oxy-N'-(3,4,5-trimethoxy-benzyl-idene)benzohydrazide.

Authors:  Liang Xu; Shan-Shan Huang; Bao-Jing Zhang; Shou-Yu Wang; Hou-Li Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

3.  3,4,5-Trihydr-oxy-N'-[(1-methyl-1H-indol-2-yl)methyl-idene]benzohydrazide.

Authors:  Hamid Khaledi; Siti Munirah Saharin; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

4.  N'-[(E)-4-Hydr-oxy-3-methoxy-benzyl-idene]benzohydrazide.

Authors:  Zahid Shafiq; Muhammad Yaqub; M Nawaz Tahir; Abid Hussain; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

5.  Converse modulation of toxic alpha-synuclein oligomers in living cells by N'-benzylidene-benzohydrazide derivates and ferric iron.

Authors:  Andreas S Hillmer; Preeti Putcha; Johannes Levin; Tobias Högen; Bradley T Hyman; Hans Kretzschmar; Pamela J McLean; Armin Giese
Journal:  Biochem Biophys Res Commun       Date:  2009-11-13       Impact factor: 3.575

6.  (E)-N'-[4-(Dimethyl-amino)-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

7.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-hy-droxy-3-meth-oxy-benzohydrazide methanol solvate.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.