Literature DB >> 21581625

N'-[(5-Chloro-1H-indol-3-yl)methyl-ene]-3,4,5-trihydroxy-benzohydrazide.

Hamid Khaledi1, Hapipah Mohd Ali, Seik Weng Ng.   

Abstract

The two aromatic parts of the title compound, C(16)H(13)ClN(3)O(4), are connected through a conjugated -CH=N-NH-C(O)- fragment, giving an almost planar mol-ecule (r.m.s. deviation 0.08 Å). In the crystal structure, adjacent mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2008        PMID: 21581625      PMCID: PMC2968080          DOI: 10.1107/S160053680804258X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural C16H13BrN3O4 analog, see: Khaledi et al. (2008 ▶).

Experimental

Crystal data

C16H12ClN3O4 M = 345.74 Monoclinic, a = 9.6481 (2) Å b = 15.1408 (3) Å c = 10.2206 (2) Å β = 98.232 (1)° V = 1477.64 (5) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 100 (2) K 0.32 × 0.22 × 0.12 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.914, T max = 0.966 10185 measured reflections 3389 independent reflections 2907 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.06 3389 reflections 220 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680804258X/xu2471sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680804258X/xu2471Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12ClN3O4F(000) = 712
Mr = 345.74Dx = 1.554 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4113 reflections
a = 9.6481 (2) Åθ = 2.4–28.2°
b = 15.1408 (3) ŵ = 0.29 mm1
c = 10.2206 (2) ÅT = 100 K
β = 98.232 (1)°Prism, orange
V = 1477.64 (5) Å30.32 × 0.22 × 0.12 mm
Z = 4
Bruker SMART APEX diffractometer3389 independent reflections
Radiation source: fine-focus sealed tube2907 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→12
Tmin = 0.914, Tmax = 0.966k = −19→19
10185 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0452P)2 + 0.6635P] where P = (Fo2 + 2Fc2)/3
3389 reflections(Δ/σ)max = 0.001
220 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.33 e Å3
xyzUiso*/Ueq
Cl10.99034 (4)1.07558 (3)0.24671 (4)0.02606 (12)
O10.68592 (10)0.82901 (7)0.56884 (10)0.0165 (2)
O20.64086 (10)0.62519 (7)0.94667 (10)0.0172 (2)
H2O0.59620.59610.99680.026*
O30.36728 (11)0.59550 (6)0.94304 (9)0.0140 (2)
H3O0.30470.61950.98010.021*
O40.16964 (10)0.67781 (7)0.73963 (10)0.0149 (2)
H4O0.15210.64140.79710.022*
N10.46397 (12)0.86816 (8)0.48430 (11)0.0138 (2)
H1N0.37400.86380.48950.017*
N20.51003 (13)0.92205 (7)0.38882 (11)0.0137 (2)
N30.39990 (13)1.10793 (8)0.03144 (12)0.0162 (3)
H3N0.35441.1361−0.03690.019*
C10.50119 (15)0.76183 (9)0.66318 (13)0.0130 (3)
C20.59758 (15)0.72084 (9)0.75913 (13)0.0141 (3)
H20.69520.73050.76160.017*
C30.54846 (15)0.66576 (9)0.85061 (13)0.0131 (3)
C40.40551 (15)0.65121 (9)0.84928 (13)0.0123 (3)
C50.31087 (14)0.69082 (9)0.75114 (13)0.0125 (3)
C60.35827 (15)0.74599 (9)0.65851 (13)0.0133 (3)
H60.29320.77300.59190.016*
C70.55811 (15)0.82260 (9)0.56894 (13)0.0131 (3)
C80.41317 (15)0.96681 (9)0.31823 (13)0.0142 (3)
H80.31950.96150.33580.017*
C90.44207 (15)1.02444 (9)0.21398 (13)0.0142 (3)
C100.33977 (16)1.05950 (9)0.11972 (14)0.0162 (3)
H100.24191.05090.11720.019*
C110.57451 (15)1.05429 (9)0.18016 (13)0.0133 (3)
C120.71420 (15)1.04422 (9)0.23767 (13)0.0147 (3)
H120.73861.01090.31640.018*
C130.81494 (16)1.08455 (10)0.17549 (14)0.0169 (3)
C140.78385 (16)1.13505 (10)0.06023 (14)0.0187 (3)
H140.85741.16090.02060.022*
C150.64682 (16)1.14724 (9)0.00445 (14)0.0172 (3)
H150.62351.1823−0.07270.021*
C160.54321 (16)1.10616 (9)0.06539 (13)0.0146 (3)
U11U22U33U12U13U23
Cl10.01421 (19)0.0351 (2)0.0286 (2)−0.00330 (15)0.00218 (15)0.00450 (16)
O10.0125 (5)0.0194 (5)0.0187 (5)−0.0004 (4)0.0054 (4)0.0023 (4)
O20.0113 (5)0.0246 (6)0.0156 (5)0.0001 (4)0.0013 (4)0.0057 (4)
O30.0132 (5)0.0167 (5)0.0131 (5)0.0012 (4)0.0055 (4)0.0018 (4)
O40.0101 (5)0.0191 (5)0.0155 (5)−0.0022 (4)0.0017 (4)0.0035 (4)
N10.0124 (6)0.0149 (6)0.0152 (6)−0.0011 (5)0.0059 (4)0.0021 (4)
N20.0159 (6)0.0135 (6)0.0129 (5)−0.0014 (5)0.0060 (4)−0.0005 (4)
N30.0185 (6)0.0160 (6)0.0135 (5)0.0028 (5)0.0003 (5)0.0009 (4)
C10.0145 (7)0.0119 (6)0.0134 (6)−0.0007 (5)0.0050 (5)−0.0029 (5)
C20.0110 (7)0.0166 (7)0.0154 (6)−0.0016 (5)0.0039 (5)−0.0022 (5)
C30.0122 (7)0.0143 (6)0.0125 (6)0.0024 (5)0.0009 (5)−0.0020 (5)
C40.0140 (7)0.0126 (6)0.0110 (6)−0.0013 (5)0.0038 (5)−0.0024 (5)
C50.0109 (6)0.0137 (6)0.0135 (6)−0.0009 (5)0.0034 (5)−0.0038 (5)
C60.0134 (7)0.0137 (6)0.0125 (6)0.0010 (5)0.0014 (5)−0.0007 (5)
C70.0151 (7)0.0121 (6)0.0131 (6)−0.0004 (5)0.0049 (5)−0.0040 (5)
C80.0132 (7)0.0149 (6)0.0153 (6)−0.0012 (5)0.0046 (5)−0.0039 (5)
C90.0153 (7)0.0136 (6)0.0139 (6)0.0004 (5)0.0029 (5)−0.0029 (5)
C100.0164 (7)0.0155 (7)0.0167 (7)0.0003 (6)0.0020 (5)−0.0032 (5)
C110.0173 (7)0.0102 (6)0.0130 (6)−0.0005 (5)0.0041 (5)−0.0028 (5)
C120.0167 (7)0.0134 (7)0.0139 (6)−0.0003 (5)0.0024 (5)−0.0005 (5)
C130.0143 (7)0.0173 (7)0.0193 (7)−0.0007 (6)0.0024 (6)−0.0022 (5)
C140.0224 (8)0.0159 (7)0.0192 (7)−0.0037 (6)0.0082 (6)−0.0005 (5)
C150.0255 (8)0.0133 (6)0.0137 (6)−0.0004 (6)0.0058 (6)−0.0002 (5)
C160.0191 (7)0.0122 (6)0.0125 (6)0.0003 (5)0.0022 (5)−0.0028 (5)
Cl1—C131.7491 (15)C2—H20.9500
O1—C71.2371 (17)C3—C41.3948 (19)
O2—C31.3731 (16)C4—C51.3919 (19)
O2—H2O0.8400C5—C61.3883 (19)
O3—C41.3664 (16)C6—H60.9500
O3—H3O0.8400C8—C91.4350 (19)
O4—C51.3650 (16)C8—H80.9500
O4—H4O0.8400C9—C101.383 (2)
N1—C71.3506 (18)C9—C111.443 (2)
N1—N21.3927 (16)C10—H100.9500
N1—H1N0.8800C11—C121.399 (2)
N2—C81.2884 (19)C11—C161.4080 (19)
N3—C101.3558 (19)C12—C131.378 (2)
N3—C161.3768 (19)C12—H120.9500
N3—H3N0.8800C13—C141.400 (2)
C1—C61.3936 (19)C14—C151.375 (2)
C1—C21.397 (2)C14—H140.9500
C1—C71.4925 (19)C15—C161.397 (2)
C2—C31.3860 (19)C15—H150.9500
C3—O2—H2O109.5O1—C7—C1120.52 (13)
C4—O3—H3O109.5N1—C7—C1116.90 (12)
C5—O4—H4O109.5N2—C8—C9122.22 (13)
C7—N1—N2119.69 (12)N2—C8—H8118.9
C7—N1—H1N120.2C9—C8—H8118.9
N2—N1—H1N120.2C10—C9—C8123.75 (14)
C8—N2—N1114.96 (12)C10—C9—C11106.32 (12)
C10—N3—C16109.38 (12)C8—C9—C11129.87 (13)
C10—N3—H3N125.3N3—C10—C9109.91 (13)
C16—N3—H3N125.3N3—C10—H10125.0
C6—C1—C2120.24 (13)C9—C10—H10125.0
C6—C1—C7122.53 (13)C12—C11—C16119.31 (13)
C2—C1—C7117.23 (13)C12—C11—C9134.24 (13)
C3—C2—C1118.90 (13)C16—C11—C9106.41 (13)
C3—C2—H2120.5C13—C12—C11117.29 (13)
C1—C2—H2120.5C13—C12—H12121.4
O2—C3—C2120.11 (12)C11—C12—H12121.4
O2—C3—C4118.44 (12)C12—C13—C14123.35 (14)
C2—C3—C4121.44 (13)C12—C13—Cl1118.55 (11)
O3—C4—C5123.80 (13)C14—C13—Cl1118.07 (11)
O3—C4—C3117.16 (12)C15—C14—C13119.96 (14)
C5—C4—C3118.99 (12)C15—C14—H14120.0
O4—C5—C6116.76 (12)C13—C14—H14120.0
O4—C5—C4122.94 (12)C14—C15—C16117.53 (13)
C6—C5—C4120.30 (13)C14—C15—H15121.2
C5—C6—C1120.07 (13)C16—C15—H15121.2
C5—C6—H6120.0N3—C16—C15129.48 (13)
C1—C6—H6120.0N3—C16—C11107.98 (12)
O1—C7—N1122.58 (13)C15—C16—C11122.54 (14)
C7—N1—N2—C8−175.96 (12)N2—C8—C9—C10166.52 (13)
C6—C1—C2—C3−1.2 (2)N2—C8—C9—C11−10.3 (2)
C7—C1—C2—C3178.31 (12)C16—N3—C10—C9−0.12 (16)
C1—C2—C3—O2−179.47 (12)C8—C9—C10—N3−177.25 (12)
C1—C2—C3—C4−0.5 (2)C11—C9—C10—N30.18 (15)
O2—C3—C4—O3−1.36 (18)C10—C9—C11—C12177.59 (15)
C2—C3—C4—O3179.69 (12)C8—C9—C11—C12−5.2 (3)
O2—C3—C4—C5−178.98 (12)C10—C9—C11—C16−0.17 (15)
C2—C3—C4—C52.1 (2)C8—C9—C11—C16177.04 (14)
O3—C4—C5—O40.2 (2)C16—C11—C12—C13−1.65 (19)
C3—C4—C5—O4177.70 (12)C9—C11—C12—C13−179.19 (14)
O3—C4—C5—C6−179.32 (12)C11—C12—C13—C140.7 (2)
C3—C4—C5—C6−1.9 (2)C11—C12—C13—Cl1178.50 (10)
O4—C5—C6—C1−179.44 (12)C12—C13—C14—C150.8 (2)
C4—C5—C6—C10.2 (2)Cl1—C13—C14—C15−176.97 (11)
C2—C1—C6—C51.4 (2)C13—C14—C15—C16−1.3 (2)
C7—C1—C6—C5−178.09 (12)C10—N3—C16—C15−179.12 (14)
N2—N1—C7—O12.73 (19)C10—N3—C16—C110.00 (15)
N2—N1—C7—C1−176.29 (11)C14—C15—C16—N3179.40 (14)
C6—C1—C7—O1−173.65 (13)C14—C15—C16—C110.4 (2)
C2—C1—C7—O16.83 (19)C12—C11—C16—N3−178.05 (12)
C6—C1—C7—N15.39 (19)C9—C11—C16—N30.11 (15)
C2—C1—C7—N1−174.13 (12)C12—C11—C16—C151.1 (2)
N1—N2—C8—C9−178.92 (12)C9—C11—C16—C15179.30 (13)
D—H···AD—HH···AD···AD—H···A
O2—H2o···O30.842.202.6726 (14)116
O3—H3o···O1i0.841.742.5818 (14)175
O4—H4o···N2i0.842.012.7668 (15)149
N1—H1n···O2ii0.882.233.0875 (16)163
N3—H3n···O4iii0.882.152.9518 (15)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2o⋯O30.842.202.6726 (14)116
O3—H3o⋯O1i0.841.742.5818 (14)175
O4—H4o⋯N2i0.842.012.7668 (15)149
N1—H1n⋯O2ii0.882.233.0875 (16)163
N3—H3n⋯O4iii0.882.152.9518 (15)152

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-(5-Bromo-1H-indol-3-ylmethyl-idene)-3,4,5-trihydroxy-benzohydrazide.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11
  2 in total
  3 in total

1.  N'-[1-(5-Bromo-2-hydroxy-phen-yl)ethyl-idene]-3,4,5-trihydroxy-benzohydrazide dimethyl sulfoxide solvate trihydrate.

Authors:  Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

2.  3,4,5-Trihydr-oxy-N'-[(1-methyl-1H-indol-2-yl)methyl-idene]benzohydrazide.

Authors:  Hamid Khaledi; Siti Munirah Saharin; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

3.  3,4,5-Trihydr-oxy-N'-(1H-indol-2-ylmethyl-idene)benzohydrazide-1H-indole-2-carbaldehyde azine-methanol (2/1/2).

Authors:  Hamid Khaledi; Abeer A Alhadi; Hapipah Mohd Ali; Ward T Robinson; Mahmood A Abdulla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12
  3 in total

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