Literature DB >> 24940204

(2,2'-Bi-pyridine-κ(2) N,N')di-chloridopalladium(II) 1,4-dioxane hemisolvate.

Ricardo Alfredo Gutiérrez Márquez1, Carmela Crisóstomo-Lucas1, David Morales-Morales1, Simón Hernández-Ortega1.   

Abstract

The asymmetric unit of the title compound, [PdCl2(C10H8N2)]·0.5C4H8O2, consists of one Pd(II) complex mol-ecule and a half-mol-ecule of 1,4-dioxane, the complete mol-ecule being generated by inversion symmetry. The Pd(II) atom has an almost square-planar coordination formed by the 2,2'-bi-pyridine ligand and two chloride ligands. Two intra-molecular C-H⋯Cl hydrogen bonds occur. In the crystal, the Pd(II) complex and 1,4-dioxane mol-ecules are connected by C-H⋯O hydrogen bonds, forming a layer parallel to (10-1). Within the layer, weak π-π inter-actions [centroid-centroid distance = 3.817 (4) Å] are observed between the pyridine rings.

Entities:  

Year:  2014        PMID: 24940204      PMCID: PMC4051027          DOI: 10.1107/S1600536814009507

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Maekawa et al. (1991 ▶); Vicente et al. (1997 ▶); Kim et al. (2009 ▶). For palladium complexes with chelate ligands, see: Pointillart et al. (2007 ▶); Pazderski et al. (2006 ▶); Ferbinteanu et al. (1998 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

[PdCl(C10H8N2)2]·0.5C4H8O2 M = 377.54 Monoclinic, a = 7.2416 (5) Å b = 14.6215 (10) Å c = 12.9562 (9) Å β = 105.423 (2)° V = 1322.44 (16) Å3 Z = 4 Mo Kα radiation μ = 1.80 mm−1 T = 298 K 0.40 × 0.07 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.365, T max = 0.906 7244 measured reflections 2414 independent reflections 1813 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.153 S = 1.03 2414 reflections 163 parameters H-atom parameters constrained Δρmax = 1.49 e Å−3 Δρmin = −1.13 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_publ_block. DOI: 10.1107/S1600536814009507/is5358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814009507/is5358Isup2.hkl CCDC reference: 999627 Additional supporting information: crystallographic information; 3D view; checkCIF report
[PdCl(C10H8N2)2]·0.5C4H8O2F(000) = 744
Mr = 377.54Dx = 1.896 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 7.2416 (5) ÅCell parameters from 4271 reflections
b = 14.6215 (10) Åθ = 2.8–25.4°
c = 12.9562 (9) ŵ = 1.80 mm1
β = 105.423 (2)°T = 298 K
V = 1322.44 (16) Å3Prism, yellow
Z = 40.40 × 0.07 × 0.06 mm
Bruker APEXII CCD area-detector diffractometer1813 reflections with I > 2σ(I)
Detector resolution: 0.83 pixels mm-1Rint = 0.055
ω scansθmax = 25.4°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→8
Tmin = 0.365, Tmax = 0.906k = −17→16
7244 measured reflectionsl = −14→15
2414 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.153w = 1/[σ2(Fo2) + (0.0933P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2414 reflectionsΔρmax = 1.49 e Å3
163 parametersΔρmin = −1.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Pd10.16709 (6)0.48172 (3)−0.14236 (4)0.0377 (2)
Cl10.1430 (3)0.56553 (14)−0.29371 (14)0.0636 (5)
Cl20.0446 (3)0.35687 (14)−0.24462 (15)0.0657 (5)
N10.1942 (6)0.4175 (3)−0.0003 (4)0.0376 (12)
C20.2757 (9)0.4690 (4)0.0871 (5)0.0387 (15)
C30.3108 (10)0.4325 (5)0.1885 (5)0.0487 (16)
H30.36780.46790.24810.058*
C40.2607 (10)0.3433 (5)0.2008 (6)0.0542 (18)
H40.28400.31790.26880.065*
C50.1779 (9)0.2927 (5)0.1140 (5)0.0512 (17)
H50.14360.23240.12210.061*
C60.1439 (9)0.3305 (5)0.0125 (6)0.0496 (16)
H60.08580.2955−0.04720.060*
N70.2849 (7)0.5840 (3)−0.0419 (4)0.0401 (12)
C80.3249 (8)0.5628 (4)0.0654 (5)0.0382 (14)
C90.4075 (9)0.6253 (5)0.1418 (5)0.0493 (16)
H90.43290.60980.21380.059*
C100.4534 (10)0.7111 (5)0.1131 (6)0.0587 (19)
H100.50920.75410.16500.070*
C110.4154 (10)0.7319 (5)0.0072 (7)0.059 (2)
H110.44610.7894−0.01390.071*
C120.3315 (9)0.6679 (4)−0.0688 (6)0.0468 (16)
H120.30640.6833−0.14080.056*
O10.4638 (7)0.5658 (4)0.4170 (4)0.0603 (13)
C130.6526 (11)0.5477 (6)0.4826 (6)0.0583 (19)
H13A0.68220.58990.54260.070*
H13B0.74440.55770.44130.070*
C140.6707 (11)0.4527 (6)0.5235 (6)0.062 (2)
H14A0.65040.41050.46370.075*
H14B0.79940.44320.56880.075*
U11U22U33U12U13U23
Pd10.0384 (3)0.0347 (4)0.0405 (4)0.00612 (19)0.0114 (2)−0.0008 (2)
Cl10.0829 (13)0.0635 (13)0.0483 (10)0.0124 (10)0.0241 (9)0.0100 (9)
Cl20.0785 (12)0.0538 (12)0.0561 (11)−0.0033 (9)0.0025 (9)−0.0138 (9)
N10.034 (2)0.035 (3)0.047 (3)0.004 (2)0.016 (2)0.000 (2)
C20.038 (3)0.036 (4)0.048 (4)0.006 (3)0.023 (3)−0.003 (3)
C30.053 (4)0.054 (5)0.041 (4)0.000 (3)0.017 (3)0.002 (3)
C40.062 (4)0.056 (5)0.050 (4)0.006 (3)0.024 (3)0.008 (4)
C50.058 (4)0.034 (4)0.069 (5)0.000 (3)0.029 (4)0.009 (4)
C60.048 (4)0.041 (4)0.061 (4)0.001 (3)0.018 (3)0.000 (3)
N70.036 (3)0.037 (3)0.051 (3)0.004 (2)0.016 (2)−0.002 (3)
C80.034 (3)0.033 (3)0.051 (4)0.000 (3)0.019 (3)−0.009 (3)
C90.054 (4)0.046 (4)0.051 (4)−0.002 (3)0.020 (3)−0.010 (3)
C100.065 (4)0.044 (4)0.070 (5)−0.008 (3)0.023 (4)−0.025 (4)
C110.055 (4)0.025 (3)0.108 (6)0.002 (3)0.043 (4)0.000 (4)
C120.051 (4)0.034 (4)0.060 (4)0.003 (3)0.022 (3)0.005 (3)
O10.078 (3)0.055 (3)0.052 (3)0.013 (3)0.023 (3)0.013 (3)
C130.066 (5)0.058 (5)0.055 (4)−0.007 (4)0.022 (4)−0.006 (4)
C140.062 (5)0.062 (5)0.064 (5)0.008 (4)0.018 (4)0.014 (4)
Pd1—N72.017 (5)C8—C91.363 (9)
Pd1—N12.029 (5)C9—C101.374 (10)
Pd1—Cl12.2793 (18)C9—H90.9300
Pd1—Cl22.2912 (19)C10—C111.360 (11)
N1—C61.345 (8)C10—H100.9300
N1—C21.357 (8)C11—C121.376 (9)
C2—C31.377 (9)C11—H110.9300
C2—C81.463 (9)C12—H120.9300
C3—C41.375 (10)O1—C14i1.420 (8)
C3—H30.9300O1—C131.430 (9)
C4—C51.346 (10)C13—C141.479 (11)
C4—H40.9300C13—H13A0.9700
C5—C61.387 (9)C13—H13B0.9700
C5—H50.9300C14—O1i1.420 (8)
C6—H60.9300C14—H14A0.9700
N7—C121.344 (8)C14—H14B0.9700
N7—C81.377 (8)
N7—Pd1—N180.5 (2)C9—C8—C2124.8 (6)
N7—Pd1—Cl194.55 (16)N7—C8—C2114.1 (5)
N1—Pd1—Cl1174.96 (15)C8—C9—C10120.4 (7)
N7—Pd1—Cl2175.00 (15)C8—C9—H9119.8
N1—Pd1—Cl294.89 (15)C10—C9—H9119.8
Cl1—Pd1—Cl290.09 (7)C11—C10—C9118.5 (7)
C6—N1—C2119.6 (5)C11—C10—H10120.7
C6—N1—Pd1125.8 (5)C9—C10—H10120.7
C2—N1—Pd1114.6 (4)C10—C11—C12120.2 (7)
N1—C2—C3120.6 (6)C10—C11—H11119.9
N1—C2—C8115.7 (5)C12—C11—H11119.9
C3—C2—C8123.7 (6)N7—C12—C11121.9 (6)
C4—C3—C2119.4 (6)N7—C12—H12119.0
C4—C3—H3120.3C11—C12—H12119.0
C2—C3—H3120.3C14i—O1—C13109.1 (6)
C5—C4—C3119.8 (7)O1—C13—C14111.5 (6)
C5—C4—H4120.1O1—C13—H13A109.3
C3—C4—H4120.1C14—C13—H13A109.3
C4—C5—C6120.0 (6)O1—C13—H13B109.3
C4—C5—H5120.0C14—C13—H13B109.3
C6—C5—H5120.0H13A—C13—H13B108.0
N1—C6—C5120.6 (6)O1i—C14—C13111.4 (6)
N1—C6—H6119.7O1i—C14—H14A109.3
C5—C6—H6119.7C13—C14—H14A109.3
C12—N7—C8117.8 (5)O1i—C14—H14B109.3
C12—N7—Pd1127.0 (5)C13—C14—H14B109.3
C8—N7—Pd1115.1 (4)H14A—C14—H14B108.0
C9—C8—N7121.1 (6)
D—H···AD—HH···AD···AD—H···A
C3—H3···O10.932.553.471 (9)170
C5—H5···O1ii0.932.573.464 (8)163
C9—H9···O10.932.663.587 (8)174
C6—H6···Cl20.932.653.239 (7)122
C12—H12···Cl10.932.653.238 (7)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O10.932.553.471 (9)170
C5—H5⋯O1i 0.932.573.464 (8)163
C9—H9⋯O10.932.663.587 (8)174
C6—H6⋯Cl20.932.653.239 (7)122
C12—H12⋯Cl10.932.653.238 (7)122

Symmetry code: (i) .

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