| Literature DB >> 24940204 |
Ricardo Alfredo Gutiérrez Márquez1, Carmela Crisóstomo-Lucas1, David Morales-Morales1, Simón Hernández-Ortega1.
Abstract
The asymmetric unit of the title compound, [PdCl2(C10H8N2)]·0.5C4H8O2, consists of one Pd(II) complex mol-ecule and a half-mol-ecule of 1,4-dioxane, the complete mol-ecule being generated by inversion symmetry. The Pd(II) atom has an almost square-planar coordination formed by the 2,2'-bi-pyridine ligand and two chloride ligands. Two intra-molecular C-H⋯Cl hydrogen bonds occur. In the crystal, the Pd(II) complex and 1,4-dioxane mol-ecules are connected by C-H⋯O hydrogen bonds, forming a layer parallel to (10-1). Within the layer, weak π-π inter-actions [centroid-centroid distance = 3.817 (4) Å] are observed between the pyridine rings.Entities:
Year: 2014 PMID: 24940204 PMCID: PMC4051027 DOI: 10.1107/S1600536814009507
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl(C10H8N2)2]·0.5C4H8O2 | |
| Monoclinic, | Mo |
| Cell parameters from 4271 reflections | |
| θ = 2.8–25.4° | |
| µ = 1.80 mm−1 | |
| β = 105.423 (2)° | |
| Prism, yellow | |
| 0.40 × 0.07 × 0.06 mm |
| Bruker APEXII CCD area-detector diffractometer | 1813 reflections with |
| Detector resolution: 0.83 pixels mm-1 | |
| ω scans | θmax = 25.4°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 7244 measured reflections | |
| 2414 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2414 reflections | Δρmax = 1.49 e Å−3 |
| 163 parameters | Δρmin = −1.13 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Pd1 | 0.16709 (6) | 0.48172 (3) | −0.14236 (4) | 0.0377 (2) | |
| Cl1 | 0.1430 (3) | 0.56553 (14) | −0.29371 (14) | 0.0636 (5) | |
| Cl2 | 0.0446 (3) | 0.35687 (14) | −0.24462 (15) | 0.0657 (5) | |
| N1 | 0.1942 (6) | 0.4175 (3) | −0.0003 (4) | 0.0376 (12) | |
| C2 | 0.2757 (9) | 0.4690 (4) | 0.0871 (5) | 0.0387 (15) | |
| C3 | 0.3108 (10) | 0.4325 (5) | 0.1885 (5) | 0.0487 (16) | |
| H3 | 0.3678 | 0.4679 | 0.2481 | 0.058* | |
| C4 | 0.2607 (10) | 0.3433 (5) | 0.2008 (6) | 0.0542 (18) | |
| H4 | 0.2840 | 0.3179 | 0.2688 | 0.065* | |
| C5 | 0.1779 (9) | 0.2927 (5) | 0.1140 (5) | 0.0512 (17) | |
| H5 | 0.1436 | 0.2324 | 0.1221 | 0.061* | |
| C6 | 0.1439 (9) | 0.3305 (5) | 0.0125 (6) | 0.0496 (16) | |
| H6 | 0.0858 | 0.2955 | −0.0472 | 0.060* | |
| N7 | 0.2849 (7) | 0.5840 (3) | −0.0419 (4) | 0.0401 (12) | |
| C8 | 0.3249 (8) | 0.5628 (4) | 0.0654 (5) | 0.0382 (14) | |
| C9 | 0.4075 (9) | 0.6253 (5) | 0.1418 (5) | 0.0493 (16) | |
| H9 | 0.4329 | 0.6098 | 0.2138 | 0.059* | |
| C10 | 0.4534 (10) | 0.7111 (5) | 0.1131 (6) | 0.0587 (19) | |
| H10 | 0.5092 | 0.7541 | 0.1650 | 0.070* | |
| C11 | 0.4154 (10) | 0.7319 (5) | 0.0072 (7) | 0.059 (2) | |
| H11 | 0.4461 | 0.7894 | −0.0139 | 0.071* | |
| C12 | 0.3315 (9) | 0.6679 (4) | −0.0688 (6) | 0.0468 (16) | |
| H12 | 0.3064 | 0.6833 | −0.1408 | 0.056* | |
| O1 | 0.4638 (7) | 0.5658 (4) | 0.4170 (4) | 0.0603 (13) | |
| C13 | 0.6526 (11) | 0.5477 (6) | 0.4826 (6) | 0.0583 (19) | |
| H13A | 0.6822 | 0.5899 | 0.5426 | 0.070* | |
| H13B | 0.7444 | 0.5577 | 0.4413 | 0.070* | |
| C14 | 0.6707 (11) | 0.4527 (6) | 0.5235 (6) | 0.062 (2) | |
| H14A | 0.6504 | 0.4105 | 0.4637 | 0.075* | |
| H14B | 0.7994 | 0.4432 | 0.5688 | 0.075* |
| Pd1 | 0.0384 (3) | 0.0347 (4) | 0.0405 (4) | 0.00612 (19) | 0.0114 (2) | −0.0008 (2) |
| Cl1 | 0.0829 (13) | 0.0635 (13) | 0.0483 (10) | 0.0124 (10) | 0.0241 (9) | 0.0100 (9) |
| Cl2 | 0.0785 (12) | 0.0538 (12) | 0.0561 (11) | −0.0033 (9) | 0.0025 (9) | −0.0138 (9) |
| N1 | 0.034 (2) | 0.035 (3) | 0.047 (3) | 0.004 (2) | 0.016 (2) | 0.000 (2) |
| C2 | 0.038 (3) | 0.036 (4) | 0.048 (4) | 0.006 (3) | 0.023 (3) | −0.003 (3) |
| C3 | 0.053 (4) | 0.054 (5) | 0.041 (4) | 0.000 (3) | 0.017 (3) | 0.002 (3) |
| C4 | 0.062 (4) | 0.056 (5) | 0.050 (4) | 0.006 (3) | 0.024 (3) | 0.008 (4) |
| C5 | 0.058 (4) | 0.034 (4) | 0.069 (5) | 0.000 (3) | 0.029 (4) | 0.009 (4) |
| C6 | 0.048 (4) | 0.041 (4) | 0.061 (4) | 0.001 (3) | 0.018 (3) | 0.000 (3) |
| N7 | 0.036 (3) | 0.037 (3) | 0.051 (3) | 0.004 (2) | 0.016 (2) | −0.002 (3) |
| C8 | 0.034 (3) | 0.033 (3) | 0.051 (4) | 0.000 (3) | 0.019 (3) | −0.009 (3) |
| C9 | 0.054 (4) | 0.046 (4) | 0.051 (4) | −0.002 (3) | 0.020 (3) | −0.010 (3) |
| C10 | 0.065 (4) | 0.044 (4) | 0.070 (5) | −0.008 (3) | 0.023 (4) | −0.025 (4) |
| C11 | 0.055 (4) | 0.025 (3) | 0.108 (6) | 0.002 (3) | 0.043 (4) | 0.000 (4) |
| C12 | 0.051 (4) | 0.034 (4) | 0.060 (4) | 0.003 (3) | 0.022 (3) | 0.005 (3) |
| O1 | 0.078 (3) | 0.055 (3) | 0.052 (3) | 0.013 (3) | 0.023 (3) | 0.013 (3) |
| C13 | 0.066 (5) | 0.058 (5) | 0.055 (4) | −0.007 (4) | 0.022 (4) | −0.006 (4) |
| C14 | 0.062 (5) | 0.062 (5) | 0.064 (5) | 0.008 (4) | 0.018 (4) | 0.014 (4) |
| Pd1—N7 | 2.017 (5) | C8—C9 | 1.363 (9) |
| Pd1—N1 | 2.029 (5) | C9—C10 | 1.374 (10) |
| Pd1—Cl1 | 2.2793 (18) | C9—H9 | 0.9300 |
| Pd1—Cl2 | 2.2912 (19) | C10—C11 | 1.360 (11) |
| N1—C6 | 1.345 (8) | C10—H10 | 0.9300 |
| N1—C2 | 1.357 (8) | C11—C12 | 1.376 (9) |
| C2—C3 | 1.377 (9) | C11—H11 | 0.9300 |
| C2—C8 | 1.463 (9) | C12—H12 | 0.9300 |
| C3—C4 | 1.375 (10) | O1—C14i | 1.420 (8) |
| C3—H3 | 0.9300 | O1—C13 | 1.430 (9) |
| C4—C5 | 1.346 (10) | C13—C14 | 1.479 (11) |
| C4—H4 | 0.9300 | C13—H13A | 0.9700 |
| C5—C6 | 1.387 (9) | C13—H13B | 0.9700 |
| C5—H5 | 0.9300 | C14—O1i | 1.420 (8) |
| C6—H6 | 0.9300 | C14—H14A | 0.9700 |
| N7—C12 | 1.344 (8) | C14—H14B | 0.9700 |
| N7—C8 | 1.377 (8) | ||
| N7—Pd1—N1 | 80.5 (2) | C9—C8—C2 | 124.8 (6) |
| N7—Pd1—Cl1 | 94.55 (16) | N7—C8—C2 | 114.1 (5) |
| N1—Pd1—Cl1 | 174.96 (15) | C8—C9—C10 | 120.4 (7) |
| N7—Pd1—Cl2 | 175.00 (15) | C8—C9—H9 | 119.8 |
| N1—Pd1—Cl2 | 94.89 (15) | C10—C9—H9 | 119.8 |
| Cl1—Pd1—Cl2 | 90.09 (7) | C11—C10—C9 | 118.5 (7) |
| C6—N1—C2 | 119.6 (5) | C11—C10—H10 | 120.7 |
| C6—N1—Pd1 | 125.8 (5) | C9—C10—H10 | 120.7 |
| C2—N1—Pd1 | 114.6 (4) | C10—C11—C12 | 120.2 (7) |
| N1—C2—C3 | 120.6 (6) | C10—C11—H11 | 119.9 |
| N1—C2—C8 | 115.7 (5) | C12—C11—H11 | 119.9 |
| C3—C2—C8 | 123.7 (6) | N7—C12—C11 | 121.9 (6) |
| C4—C3—C2 | 119.4 (6) | N7—C12—H12 | 119.0 |
| C4—C3—H3 | 120.3 | C11—C12—H12 | 119.0 |
| C2—C3—H3 | 120.3 | C14i—O1—C13 | 109.1 (6) |
| C5—C4—C3 | 119.8 (7) | O1—C13—C14 | 111.5 (6) |
| C5—C4—H4 | 120.1 | O1—C13—H13A | 109.3 |
| C3—C4—H4 | 120.1 | C14—C13—H13A | 109.3 |
| C4—C5—C6 | 120.0 (6) | O1—C13—H13B | 109.3 |
| C4—C5—H5 | 120.0 | C14—C13—H13B | 109.3 |
| C6—C5—H5 | 120.0 | H13A—C13—H13B | 108.0 |
| N1—C6—C5 | 120.6 (6) | O1i—C14—C13 | 111.4 (6) |
| N1—C6—H6 | 119.7 | O1i—C14—H14A | 109.3 |
| C5—C6—H6 | 119.7 | C13—C14—H14A | 109.3 |
| C12—N7—C8 | 117.8 (5) | O1i—C14—H14B | 109.3 |
| C12—N7—Pd1 | 127.0 (5) | C13—C14—H14B | 109.3 |
| C8—N7—Pd1 | 115.1 (4) | H14A—C14—H14B | 108.0 |
| C9—C8—N7 | 121.1 (6) |
| H··· | ||||
| C3—H3···O1 | 0.93 | 2.55 | 3.471 (9) | 170 |
| C5—H5···O1ii | 0.93 | 2.57 | 3.464 (8) | 163 |
| C9—H9···O1 | 0.93 | 2.66 | 3.587 (8) | 174 |
| C6—H6···Cl2 | 0.93 | 2.65 | 3.239 (7) | 122 |
| C12—H12···Cl1 | 0.93 | 2.65 | 3.238 (7) | 122 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯O1 | 0.93 | 2.55 | 3.471 (9) | 170 |
| C5—H5⋯O1i | 0.93 | 2.57 | 3.464 (8) | 163 |
| C9—H9⋯O1 | 0.93 | 2.66 | 3.587 (8) | 174 |
| C6—H6⋯Cl2 | 0.93 | 2.65 | 3.239 (7) | 122 |
| C12—H12⋯Cl1 | 0.93 | 2.65 | 3.238 (7) | 122 |
Symmetry code: (i) .