Literature DB >> 21582885

2-Meth-oxy-6-(6-methyl-1H-benzimid-azol-2-yl)phenol.

Naser Eltaher Eltayeb, Siang Guan Teoh, Ching Kheng Quah, Hoong-Kun Fun, Rohana Adnan.   

Abstract

In the title mol-ecule, C(15)H(14)N(2)O(2), the substituted benzene ring forms a dihedral angle of 4.15 (1)° with the benzimidazole ring system. An intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. In the solid state, mol-ecules are linked into chains along the [001] via inter-molecular bifurcated N-H⋯(O,O) hydrogen bonds, which generate R(1) (2)(5) ring motifs. The crystal packing is also consolidated by C-H⋯π inter-actions, and π-π stacking inter-actions between the imidazole and substituted benzene rings [centroid-centroid distance = 3.5746 (13) Å]. The methyl group attached to the benzimidazole ring system is disordered over two positions with occupancies of 0.587 (6) and 0.413 (6), suggesting 180° rotational disorder for the benzimidazole group.

Entities:  

Year:  2009        PMID: 21582885      PMCID: PMC2969490          DOI: 10.1107/S1600536809022478

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzimidazole derivatives, see: Minoura et al. (2004 ▶); Pawar et al. (2004 ▶); Tomei et al. (2003 ▶); Rao et al. (2003 ▶); Demirayak et al. (2002 ▶). For related structures, see: Eltayeb et al. (2007a ▶,b ▶,c ▶); Yeap et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C15H14N2O2 M = 254.28 Tetragonal, a = 14.4118 (2) Å c = 12.0995 (2) Å V = 2513.07 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.35 × 0.27 × 0.24 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.969, T max = 0.978 28200 measured reflections 2215 independent reflections 1725 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.156 S = 1.08 2215 reflections 193 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022478/ci2825sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022478/ci2825Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O2Dx = 1.344 Mg m3
Mr = 254.28Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P42/nCell parameters from 9054 reflections
Hall symbol: -P 4bcθ = 2.2–29.6°
a = 14.4118 (2) ŵ = 0.09 mm1
c = 12.0995 (2) ÅT = 100 K
V = 2513.07 (6) Å3Block, yellow
Z = 80.35 × 0.27 × 0.24 mm
F(000) = 1072
Bruker SMART APEXII CCD area-detector diffractometer2215 independent reflections
Radiation source: fine-focus sealed tube1725 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→16
Tmin = 0.969, Tmax = 0.978k = −17→17
28200 measured reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0696P)2 + 1.1514P] where P = (Fo2 + 2Fc2)/3
2215 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.29 e Å3
6 restraintsΔρmin = −0.17 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.63382 (12)0.20396 (13)−0.12954 (12)0.0575 (5)
H1O0.632 (2)0.268 (2)−0.104 (3)0.094 (10)*
O20.63393 (12)0.02461 (12)−0.12218 (13)0.0641 (5)
N10.62805 (13)0.37806 (15)0.14723 (17)0.0556 (5)
H1N0.6438 (18)0.3647 (18)0.219 (3)0.077 (8)*
N20.62434 (13)0.36357 (13)−0.03521 (15)0.0506 (5)
C10.62626 (15)0.46707 (17)0.1047 (2)0.0579 (6)
C20.62707 (18)0.5541 (2)0.1545 (3)0.0726 (8)
H20.62990.56080.23090.087*
C30.62340 (18)0.63115 (19)0.0839 (3)0.0753 (8)
H30.62350.69060.11390.090*0.413 (6)
C40.6197 (2)0.6204 (2)−0.0292 (3)0.0787 (9)
H40.61680.6729−0.07380.094*0.587 (6)
C50.62015 (19)0.53499 (19)−0.0773 (3)0.0730 (8)
H50.61820.5289−0.15380.088*
C60.62354 (15)0.45686 (17)−0.0092 (2)0.0540 (6)
C70.62715 (14)0.31865 (16)0.06068 (17)0.0469 (6)
C80.62766 (14)0.21826 (16)0.06973 (17)0.0456 (5)
C90.63060 (14)0.16508 (16)−0.02796 (16)0.0456 (5)
C100.63048 (15)0.06902 (17)−0.02064 (18)0.0511 (6)
C110.62696 (16)0.02486 (17)0.0801 (2)0.0559 (6)
H110.6263−0.03960.08380.067*
C120.62437 (16)0.07732 (17)0.17613 (19)0.0572 (6)
H120.62270.04780.24440.069*
C130.62424 (15)0.17223 (16)0.17120 (18)0.0513 (6)
H130.62180.20650.23630.062*
C140.6320 (2)−0.07360 (18)−0.1201 (2)0.0739 (8)
H14A0.6353−0.0970−0.19420.111*
H14B0.5754−0.0942−0.08620.111*
H14C0.6840−0.0962−0.07840.111*
C150.6189 (3)0.7303 (3)0.1250 (4)0.0672 (15)0.587 (6)
H15A0.66640.76640.08960.101*0.587 (6)
H15B0.62820.73140.20350.101*0.587 (6)
H15C0.55920.75610.10780.101*0.587 (6)
C15A0.6243 (6)0.7101 (5)−0.0739 (9)0.106 (3)0.413 (6)
H15D0.57630.7175−0.12820.160*0.413 (6)
H15E0.68370.7191−0.10800.160*0.413 (6)
H15F0.61590.7549−0.01610.160*0.413 (6)
U11U22U33U12U13U23
O10.0754 (11)0.0642 (11)0.0329 (9)0.0026 (8)0.0016 (7)0.0016 (7)
O20.0800 (12)0.0649 (11)0.0474 (10)0.0083 (9)−0.0050 (8)−0.0113 (8)
N10.0574 (12)0.0687 (14)0.0407 (11)0.0040 (10)−0.0037 (9)−0.0075 (10)
N20.0537 (12)0.0567 (12)0.0415 (11)0.0009 (9)0.0024 (8)0.0063 (9)
C10.0444 (13)0.0568 (15)0.0725 (17)0.0022 (10)0.0038 (11)−0.0055 (12)
C20.0608 (16)0.079 (2)0.0781 (18)0.0009 (13)0.0067 (14)−0.0209 (16)
C30.0564 (15)0.0563 (16)0.113 (2)−0.0023 (12)0.0144 (15)−0.0108 (15)
C40.0736 (19)0.071 (2)0.092 (2)−0.0012 (14)0.0211 (16)0.0047 (16)
C50.0750 (18)0.0601 (17)0.0837 (19)0.0024 (13)0.0163 (15)0.0105 (15)
C60.0490 (13)0.0562 (15)0.0568 (15)−0.0009 (10)0.0053 (11)0.0012 (11)
C70.0393 (12)0.0602 (14)0.0413 (13)−0.0005 (10)−0.0004 (9)−0.0022 (10)
C80.0388 (11)0.0593 (14)0.0387 (12)0.0020 (9)−0.0018 (9)0.0024 (10)
C90.0405 (12)0.0641 (15)0.0323 (11)0.0027 (10)0.0007 (9)0.0040 (10)
C100.0476 (13)0.0619 (15)0.0438 (13)0.0049 (10)−0.0056 (10)−0.0051 (10)
C110.0579 (14)0.0548 (14)0.0549 (15)0.0010 (11)−0.0065 (11)0.0047 (11)
C120.0632 (15)0.0655 (16)0.0429 (13)0.0008 (12)−0.0042 (11)0.0075 (11)
C130.0563 (14)0.0637 (15)0.0338 (12)0.0018 (11)−0.0030 (10)0.0008 (10)
C140.085 (2)0.0676 (18)0.0689 (18)0.0108 (14)−0.0186 (15)−0.0187 (14)
C150.066 (3)0.061 (3)0.074 (3)0.001 (2)0.005 (2)−0.009 (2)
C15A0.102 (6)0.056 (5)0.162 (9)0.003 (4)0.001 (6)0.031 (5)
O1—C91.352 (2)C5—H50.93
O1—H1O0.97 (3)C7—C81.451 (3)
O2—C101.386 (3)C8—C131.396 (3)
O2—C141.416 (3)C8—C91.409 (3)
N1—C71.353 (3)C9—C101.387 (3)
N1—C11.382 (3)C10—C111.376 (3)
N1—H1N0.92 (3)C11—C121.387 (3)
N2—C71.329 (3)C11—H110.93
N2—C61.381 (3)C12—C131.369 (3)
C1—C61.387 (4)C12—H120.93
C1—C21.392 (4)C13—H130.93
C2—C31.402 (4)C14—H14A0.96
C2—H20.93C14—H14B0.96
C3—C41.378 (5)C14—H14C0.96
C3—C151.515 (5)C15—H15A0.96
C3—H30.93C15—H15B0.96
C4—C51.362 (4)C15—H15C0.96
C4—C15A1.403 (8)C15A—H15D0.96
C4—H40.93C15A—H15E0.96
C5—C61.396 (4)C15A—H15F0.96
C9—O1—H1O95.9 (19)C13—C8—C7122.7 (2)
C10—O2—C14116.42 (19)C9—C8—C7118.62 (19)
C7—N1—C1107.4 (2)O1—C9—C10118.15 (19)
C7—N1—H1N127.0 (17)O1—C9—C8122.6 (2)
C1—N1—H1N123.5 (16)C10—C9—C8119.28 (19)
C7—N2—C6106.02 (19)C11—C10—O2125.0 (2)
N1—C1—C6105.8 (2)C11—C10—C9121.2 (2)
N1—C1—C2132.5 (3)O2—C10—C9113.8 (2)
C6—C1—C2121.8 (3)C10—C11—C12119.4 (2)
C1—C2—C3116.7 (3)C10—C11—H11120.3
C1—C2—H2121.6C12—C11—H11120.3
C3—C2—H2121.6C13—C12—C11120.5 (2)
C4—C3—C2121.2 (3)C13—C12—H12119.7
C4—C3—C15115.5 (3)C11—C12—H12119.7
C2—C3—C15123.3 (3)C12—C13—C8120.8 (2)
C4—C3—H3119.4C12—C13—H13119.6
C2—C3—H3119.4C8—C13—H13119.6
C5—C4—C3121.7 (3)O2—C14—H14A109.5
C5—C4—C15A131.9 (5)O2—C14—H14B109.5
C3—C4—C15A106.1 (5)H14A—C14—H14B109.5
C5—C4—H4119.1O2—C14—H14C109.5
C3—C4—H4119.1H14A—C14—H14C109.5
C4—C5—C6118.5 (3)H14B—C14—H14C109.5
C4—C5—H5120.8C3—C15—H15A109.5
C6—C5—H5120.8C3—C15—H15B109.5
N2—C6—C1109.2 (2)C3—C15—H15C109.5
N2—C6—C5130.7 (2)C4—C15A—H15D109.5
C1—C6—C5120.1 (2)C4—C15A—H15E109.5
N2—C7—N1111.6 (2)H15D—C15A—H15E109.5
N2—C7—C8123.48 (19)C4—C15A—H15F109.5
N1—C7—C8124.9 (2)H15D—C15A—H15F109.5
C13—C8—C9118.7 (2)H15E—C15A—H15F109.5
C7—N1—C1—C60.5 (2)C1—N1—C7—N2−0.4 (2)
C7—N1—C1—C2−179.3 (2)C1—N1—C7—C8−179.45 (19)
N1—C1—C2—C3−179.2 (2)N2—C7—C8—C13−175.5 (2)
C6—C1—C2—C31.1 (4)N1—C7—C8—C133.5 (3)
C1—C2—C3—C4−0.4 (4)N2—C7—C8—C93.7 (3)
C1—C2—C3—C15176.8 (3)N1—C7—C8—C9−177.3 (2)
C2—C3—C4—C5−0.5 (4)C13—C8—C9—O1179.87 (19)
C15—C3—C4—C5−177.9 (3)C7—C8—C9—O10.6 (3)
C2—C3—C4—C15A−175.4 (4)C13—C8—C9—C10−0.3 (3)
C15—C3—C4—C15A7.2 (5)C7—C8—C9—C10−179.56 (19)
C3—C4—C5—C60.6 (4)C14—O2—C10—C111.1 (3)
C15A—C4—C5—C6174.0 (5)C14—O2—C10—C9−178.7 (2)
C7—N2—C6—C10.2 (2)O1—C9—C10—C11−179.8 (2)
C7—N2—C6—C5−179.4 (2)C8—C9—C10—C110.4 (3)
N1—C1—C6—N2−0.4 (3)O1—C9—C10—O20.1 (3)
C2—C1—C6—N2179.4 (2)C8—C9—C10—O2−179.74 (18)
N1—C1—C6—C5179.3 (2)O2—C10—C11—C12179.6 (2)
C2—C1—C6—C5−0.9 (4)C9—C10—C11—C12−0.6 (3)
C4—C5—C6—N2179.7 (2)C10—C11—C12—C130.7 (3)
C4—C5—C6—C10.1 (4)C11—C12—C13—C8−0.7 (3)
C6—N2—C7—N10.1 (2)C9—C8—C13—C120.4 (3)
C6—N2—C7—C8179.20 (19)C7—C8—C13—C12179.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.92 (4)2.03 (3)2.919 (3)164 (2)
N1—H1N···O2i0.92 (4)2.58 (3)3.168 (3)123 (2)
O1—H1O···N20.97 (3)1.61 (3)2.572 (3)167 (3)
C14—H14B···Cg1ii0.962.953.840 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.92 (4)2.03 (3)2.919 (3)164 (2)
N1—H1N⋯O2i0.92 (4)2.58 (3)3.168 (3)123 (2)
O1—H1O⋯N20.97 (3)1.61 (3)2.572 (3)167 (3)
C14—H14BCg1ii0.962.953.840 (3)154

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C8–C13 benzene ring.

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