| Literature DB >> 21582885 |
Naser Eltaher Eltayeb, Siang Guan Teoh, Ching Kheng Quah, Hoong-Kun Fun, Rohana Adnan.
Abstract
In the title mol-ecule, C(15)H(14)N(2)O(2), the substituted benzene ring forms a dihedral angle of 4.15 (1)° with the benzimidazole ring system. An intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. In the solid state, mol-ecules are linked into chains along the [001] via inter-molecular bifurcated N-H⋯(O,O) hydrogen bonds, which generate R(1) (2)(5) ring motifs. The crystal packing is also consolidated by C-H⋯π inter-actions, and π-π stacking inter-actions between the imidazole and substituted benzene rings [centroid-centroid distance = 3.5746 (13) Å]. The methyl group attached to the benzimidazole ring system is disordered over two positions with occupancies of 0.587 (6) and 0.413 (6), suggesting 180° rotational disorder for the benzimidazole group.Entities:
Year: 2009 PMID: 21582885 PMCID: PMC2969490 DOI: 10.1107/S1600536809022478
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H14N2O2 | |
| Mo | |
| Tetragonal, | Cell parameters from 9054 reflections |
| Hall symbol: -P 4bc | θ = 2.2–29.6° |
| µ = 0.09 mm−1 | |
| Block, yellow | |
| 0.35 × 0.27 × 0.24 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2215 independent reflections |
| Radiation source: fine-focus sealed tube | 1725 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 28200 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2215 reflections | (Δ/σ)max = 0.001 |
| 193 parameters | Δρmax = 0.29 e Å−3 |
| 6 restraints | Δρmin = −0.17 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.63382 (12) | 0.20396 (13) | −0.12954 (12) | 0.0575 (5) | |
| H1O | 0.632 (2) | 0.268 (2) | −0.104 (3) | 0.094 (10)* | |
| O2 | 0.63393 (12) | 0.02461 (12) | −0.12218 (13) | 0.0641 (5) | |
| N1 | 0.62805 (13) | 0.37806 (15) | 0.14723 (17) | 0.0556 (5) | |
| H1N | 0.6438 (18) | 0.3647 (18) | 0.219 (3) | 0.077 (8)* | |
| N2 | 0.62434 (13) | 0.36357 (13) | −0.03521 (15) | 0.0506 (5) | |
| C1 | 0.62626 (15) | 0.46707 (17) | 0.1047 (2) | 0.0579 (6) | |
| C2 | 0.62707 (18) | 0.5541 (2) | 0.1545 (3) | 0.0726 (8) | |
| H2 | 0.6299 | 0.5608 | 0.2309 | 0.087* | |
| C3 | 0.62340 (18) | 0.63115 (19) | 0.0839 (3) | 0.0753 (8) | |
| H3 | 0.6235 | 0.6906 | 0.1139 | 0.090* | 0.413 (6) |
| C4 | 0.6197 (2) | 0.6204 (2) | −0.0292 (3) | 0.0787 (9) | |
| H4 | 0.6168 | 0.6729 | −0.0738 | 0.094* | 0.587 (6) |
| C5 | 0.62015 (19) | 0.53499 (19) | −0.0773 (3) | 0.0730 (8) | |
| H5 | 0.6182 | 0.5289 | −0.1538 | 0.088* | |
| C6 | 0.62354 (15) | 0.45686 (17) | −0.0092 (2) | 0.0540 (6) | |
| C7 | 0.62715 (14) | 0.31865 (16) | 0.06068 (17) | 0.0469 (6) | |
| C8 | 0.62766 (14) | 0.21826 (16) | 0.06973 (17) | 0.0456 (5) | |
| C9 | 0.63060 (14) | 0.16508 (16) | −0.02796 (16) | 0.0456 (5) | |
| C10 | 0.63048 (15) | 0.06902 (17) | −0.02064 (18) | 0.0511 (6) | |
| C11 | 0.62696 (16) | 0.02486 (17) | 0.0801 (2) | 0.0559 (6) | |
| H11 | 0.6263 | −0.0396 | 0.0838 | 0.067* | |
| C12 | 0.62437 (16) | 0.07732 (17) | 0.17613 (19) | 0.0572 (6) | |
| H12 | 0.6227 | 0.0478 | 0.2444 | 0.069* | |
| C13 | 0.62424 (15) | 0.17223 (16) | 0.17120 (18) | 0.0513 (6) | |
| H13 | 0.6218 | 0.2065 | 0.2363 | 0.062* | |
| C14 | 0.6320 (2) | −0.07360 (18) | −0.1201 (2) | 0.0739 (8) | |
| H14A | 0.6353 | −0.0970 | −0.1942 | 0.111* | |
| H14B | 0.5754 | −0.0942 | −0.0862 | 0.111* | |
| H14C | 0.6840 | −0.0962 | −0.0784 | 0.111* | |
| C15 | 0.6189 (3) | 0.7303 (3) | 0.1250 (4) | 0.0672 (15) | 0.587 (6) |
| H15A | 0.6664 | 0.7664 | 0.0896 | 0.101* | 0.587 (6) |
| H15B | 0.6282 | 0.7314 | 0.2035 | 0.101* | 0.587 (6) |
| H15C | 0.5592 | 0.7561 | 0.1078 | 0.101* | 0.587 (6) |
| C15A | 0.6243 (6) | 0.7101 (5) | −0.0739 (9) | 0.106 (3) | 0.413 (6) |
| H15D | 0.5763 | 0.7175 | −0.1282 | 0.160* | 0.413 (6) |
| H15E | 0.6837 | 0.7191 | −0.1080 | 0.160* | 0.413 (6) |
| H15F | 0.6159 | 0.7549 | −0.0161 | 0.160* | 0.413 (6) |
| O1 | 0.0754 (11) | 0.0642 (11) | 0.0329 (9) | 0.0026 (8) | 0.0016 (7) | 0.0016 (7) |
| O2 | 0.0800 (12) | 0.0649 (11) | 0.0474 (10) | 0.0083 (9) | −0.0050 (8) | −0.0113 (8) |
| N1 | 0.0574 (12) | 0.0687 (14) | 0.0407 (11) | 0.0040 (10) | −0.0037 (9) | −0.0075 (10) |
| N2 | 0.0537 (12) | 0.0567 (12) | 0.0415 (11) | 0.0009 (9) | 0.0024 (8) | 0.0063 (9) |
| C1 | 0.0444 (13) | 0.0568 (15) | 0.0725 (17) | 0.0022 (10) | 0.0038 (11) | −0.0055 (12) |
| C2 | 0.0608 (16) | 0.079 (2) | 0.0781 (18) | 0.0009 (13) | 0.0067 (14) | −0.0209 (16) |
| C3 | 0.0564 (15) | 0.0563 (16) | 0.113 (2) | −0.0023 (12) | 0.0144 (15) | −0.0108 (15) |
| C4 | 0.0736 (19) | 0.071 (2) | 0.092 (2) | −0.0012 (14) | 0.0211 (16) | 0.0047 (16) |
| C5 | 0.0750 (18) | 0.0601 (17) | 0.0837 (19) | 0.0024 (13) | 0.0163 (15) | 0.0105 (15) |
| C6 | 0.0490 (13) | 0.0562 (15) | 0.0568 (15) | −0.0009 (10) | 0.0053 (11) | 0.0012 (11) |
| C7 | 0.0393 (12) | 0.0602 (14) | 0.0413 (13) | −0.0005 (10) | −0.0004 (9) | −0.0022 (10) |
| C8 | 0.0388 (11) | 0.0593 (14) | 0.0387 (12) | 0.0020 (9) | −0.0018 (9) | 0.0024 (10) |
| C9 | 0.0405 (12) | 0.0641 (15) | 0.0323 (11) | 0.0027 (10) | 0.0007 (9) | 0.0040 (10) |
| C10 | 0.0476 (13) | 0.0619 (15) | 0.0438 (13) | 0.0049 (10) | −0.0056 (10) | −0.0051 (10) |
| C11 | 0.0579 (14) | 0.0548 (14) | 0.0549 (15) | 0.0010 (11) | −0.0065 (11) | 0.0047 (11) |
| C12 | 0.0632 (15) | 0.0655 (16) | 0.0429 (13) | 0.0008 (12) | −0.0042 (11) | 0.0075 (11) |
| C13 | 0.0563 (14) | 0.0637 (15) | 0.0338 (12) | 0.0018 (11) | −0.0030 (10) | 0.0008 (10) |
| C14 | 0.085 (2) | 0.0676 (18) | 0.0689 (18) | 0.0108 (14) | −0.0186 (15) | −0.0187 (14) |
| C15 | 0.066 (3) | 0.061 (3) | 0.074 (3) | 0.001 (2) | 0.005 (2) | −0.009 (2) |
| C15A | 0.102 (6) | 0.056 (5) | 0.162 (9) | 0.003 (4) | 0.001 (6) | 0.031 (5) |
| O1—C9 | 1.352 (2) | C5—H5 | 0.93 |
| O1—H1O | 0.97 (3) | C7—C8 | 1.451 (3) |
| O2—C10 | 1.386 (3) | C8—C13 | 1.396 (3) |
| O2—C14 | 1.416 (3) | C8—C9 | 1.409 (3) |
| N1—C7 | 1.353 (3) | C9—C10 | 1.387 (3) |
| N1—C1 | 1.382 (3) | C10—C11 | 1.376 (3) |
| N1—H1N | 0.92 (3) | C11—C12 | 1.387 (3) |
| N2—C7 | 1.329 (3) | C11—H11 | 0.93 |
| N2—C6 | 1.381 (3) | C12—C13 | 1.369 (3) |
| C1—C6 | 1.387 (4) | C12—H12 | 0.93 |
| C1—C2 | 1.392 (4) | C13—H13 | 0.93 |
| C2—C3 | 1.402 (4) | C14—H14A | 0.96 |
| C2—H2 | 0.93 | C14—H14B | 0.96 |
| C3—C4 | 1.378 (5) | C14—H14C | 0.96 |
| C3—C15 | 1.515 (5) | C15—H15A | 0.96 |
| C3—H3 | 0.93 | C15—H15B | 0.96 |
| C4—C5 | 1.362 (4) | C15—H15C | 0.96 |
| C4—C15A | 1.403 (8) | C15A—H15D | 0.96 |
| C4—H4 | 0.93 | C15A—H15E | 0.96 |
| C5—C6 | 1.396 (4) | C15A—H15F | 0.96 |
| C9—O1—H1O | 95.9 (19) | C13—C8—C7 | 122.7 (2) |
| C10—O2—C14 | 116.42 (19) | C9—C8—C7 | 118.62 (19) |
| C7—N1—C1 | 107.4 (2) | O1—C9—C10 | 118.15 (19) |
| C7—N1—H1N | 127.0 (17) | O1—C9—C8 | 122.6 (2) |
| C1—N1—H1N | 123.5 (16) | C10—C9—C8 | 119.28 (19) |
| C7—N2—C6 | 106.02 (19) | C11—C10—O2 | 125.0 (2) |
| N1—C1—C6 | 105.8 (2) | C11—C10—C9 | 121.2 (2) |
| N1—C1—C2 | 132.5 (3) | O2—C10—C9 | 113.8 (2) |
| C6—C1—C2 | 121.8 (3) | C10—C11—C12 | 119.4 (2) |
| C1—C2—C3 | 116.7 (3) | C10—C11—H11 | 120.3 |
| C1—C2—H2 | 121.6 | C12—C11—H11 | 120.3 |
| C3—C2—H2 | 121.6 | C13—C12—C11 | 120.5 (2) |
| C4—C3—C2 | 121.2 (3) | C13—C12—H12 | 119.7 |
| C4—C3—C15 | 115.5 (3) | C11—C12—H12 | 119.7 |
| C2—C3—C15 | 123.3 (3) | C12—C13—C8 | 120.8 (2) |
| C4—C3—H3 | 119.4 | C12—C13—H13 | 119.6 |
| C2—C3—H3 | 119.4 | C8—C13—H13 | 119.6 |
| C5—C4—C3 | 121.7 (3) | O2—C14—H14A | 109.5 |
| C5—C4—C15A | 131.9 (5) | O2—C14—H14B | 109.5 |
| C3—C4—C15A | 106.1 (5) | H14A—C14—H14B | 109.5 |
| C5—C4—H4 | 119.1 | O2—C14—H14C | 109.5 |
| C3—C4—H4 | 119.1 | H14A—C14—H14C | 109.5 |
| C4—C5—C6 | 118.5 (3) | H14B—C14—H14C | 109.5 |
| C4—C5—H5 | 120.8 | C3—C15—H15A | 109.5 |
| C6—C5—H5 | 120.8 | C3—C15—H15B | 109.5 |
| N2—C6—C1 | 109.2 (2) | C3—C15—H15C | 109.5 |
| N2—C6—C5 | 130.7 (2) | C4—C15A—H15D | 109.5 |
| C1—C6—C5 | 120.1 (2) | C4—C15A—H15E | 109.5 |
| N2—C7—N1 | 111.6 (2) | H15D—C15A—H15E | 109.5 |
| N2—C7—C8 | 123.48 (19) | C4—C15A—H15F | 109.5 |
| N1—C7—C8 | 124.9 (2) | H15D—C15A—H15F | 109.5 |
| C13—C8—C9 | 118.7 (2) | H15E—C15A—H15F | 109.5 |
| C7—N1—C1—C6 | 0.5 (2) | C1—N1—C7—N2 | −0.4 (2) |
| C7—N1—C1—C2 | −179.3 (2) | C1—N1—C7—C8 | −179.45 (19) |
| N1—C1—C2—C3 | −179.2 (2) | N2—C7—C8—C13 | −175.5 (2) |
| C6—C1—C2—C3 | 1.1 (4) | N1—C7—C8—C13 | 3.5 (3) |
| C1—C2—C3—C4 | −0.4 (4) | N2—C7—C8—C9 | 3.7 (3) |
| C1—C2—C3—C15 | 176.8 (3) | N1—C7—C8—C9 | −177.3 (2) |
| C2—C3—C4—C5 | −0.5 (4) | C13—C8—C9—O1 | 179.87 (19) |
| C15—C3—C4—C5 | −177.9 (3) | C7—C8—C9—O1 | 0.6 (3) |
| C2—C3—C4—C15A | −175.4 (4) | C13—C8—C9—C10 | −0.3 (3) |
| C15—C3—C4—C15A | 7.2 (5) | C7—C8—C9—C10 | −179.56 (19) |
| C3—C4—C5—C6 | 0.6 (4) | C14—O2—C10—C11 | 1.1 (3) |
| C15A—C4—C5—C6 | 174.0 (5) | C14—O2—C10—C9 | −178.7 (2) |
| C7—N2—C6—C1 | 0.2 (2) | O1—C9—C10—C11 | −179.8 (2) |
| C7—N2—C6—C5 | −179.4 (2) | C8—C9—C10—C11 | 0.4 (3) |
| N1—C1—C6—N2 | −0.4 (3) | O1—C9—C10—O2 | 0.1 (3) |
| C2—C1—C6—N2 | 179.4 (2) | C8—C9—C10—O2 | −179.74 (18) |
| N1—C1—C6—C5 | 179.3 (2) | O2—C10—C11—C12 | 179.6 (2) |
| C2—C1—C6—C5 | −0.9 (4) | C9—C10—C11—C12 | −0.6 (3) |
| C4—C5—C6—N2 | 179.7 (2) | C10—C11—C12—C13 | 0.7 (3) |
| C4—C5—C6—C1 | 0.1 (4) | C11—C12—C13—C8 | −0.7 (3) |
| C6—N2—C7—N1 | 0.1 (2) | C9—C8—C13—C12 | 0.4 (3) |
| C6—N2—C7—C8 | 179.20 (19) | C7—C8—C13—C12 | 179.7 (2) |
| H··· | ||||
| N1—H1N···O1i | 0.92 (4) | 2.03 (3) | 2.919 (3) | 164 (2) |
| N1—H1N···O2i | 0.92 (4) | 2.58 (3) | 3.168 (3) | 123 (2) |
| O1—H1O···N2 | 0.97 (3) | 1.61 (3) | 2.572 (3) | 167 (3) |
| C14—H14B···Cg1ii | 0.96 | 2.95 | 3.840 (3) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.92 (4) | 2.03 (3) | 2.919 (3) | 164 (2) |
| N1—H1 | 0.92 (4) | 2.58 (3) | 3.168 (3) | 123 (2) |
| O1—H1 | 0.97 (3) | 1.61 (3) | 2.572 (3) | 167 (3) |
| C14—H14 | 0.96 | 2.95 | 3.840 (3) | 154 |
Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C8–C13 benzene ring.