Literature DB >> 21589434

2-(5,6-Dibromo-7-methyl-3H-imidazo[4,5-b]pyridin-2-yl)phenol.

Haixia Wang1.   

Abstract

In the title compound, C(13)H(9)Br(2)N(3)O, the mol-ecular skeleton, influenced by an intra-molecular O-H⋯N hydrogen bond, is roughly planar, with a mean deviation of 0.033 Å. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into chains propagating in [100]. Weak inter-molecular π-π inter-actions [centroid-centroid distances = 3.760 (3) and 3.723 (3) Å] further consolidate the packing.

Entities:  

Year:  2010        PMID: 21589434      PMCID: PMC3011805          DOI: 10.1107/S1600536810045277

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of imidazole and its derivatives in transition metal complexes, see: Huang et al. (2004 ▶). For related structures, see: Eltayeb et al. (2009 ▶); Xiao et al. (2009 ▶); Elerman & Kabak (1997 ▶).

Experimental

Crystal data

C13H9Br2N3O M = 383.05 Orthorhombic, a = 13.181 (5) Å b = 8.494 (3) Å c = 22.692 (8) Å V = 2540.5 (16) Å3 Z = 8 Mo Kα radiation μ = 6.38 mm−1 T = 293 K 0.31 × 0.28 × 0.24 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.243, T max = 0.310 11656 measured reflections 2234 independent reflections 1706 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.138 S = 1.08 2234 reflections 173 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.88 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045277/cv2784sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045277/cv2784Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9Br2N3OF(000) = 1488
Mr = 383.05Dx = 2.003 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1452 reflections
a = 13.181 (5) Åθ = 2.9–24.6°
b = 8.494 (3) ŵ = 6.38 mm1
c = 22.692 (8) ÅT = 293 K
V = 2540.5 (16) Å3Block, orange–yellow
Z = 80.31 × 0.28 × 0.24 mm
Bruker APEXII CCD area-detector diffractometer2234 independent reflections
Radiation source: fine-focus sealed tube1706 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −15→15
Tmin = 0.243, Tmax = 0.310k = −9→10
11656 measured reflectionsl = −24→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0692P)2 + 6.558P] where P = (Fo2 + 2Fc2)/3
2234 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.88 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.27968 (6)1.22305 (9)0.48970 (3)0.0618 (3)
Br20.51701 (6)1.19032 (9)0.54180 (3)0.0669 (3)
O10.0310 (3)0.7707 (6)0.73898 (19)0.0541 (12)
H10.06140.81110.71130.081*
N10.3413 (3)0.8522 (5)0.7102 (2)0.0380 (10)
H1A0.40110.82150.73060.046*
N20.1806 (3)0.8887 (5)0.68102 (19)0.0365 (10)
N30.4280 (4)1.0090 (7)0.6313 (2)0.0615 (15)
C10.3468 (4)0.9445 (6)0.6601 (2)0.0348 (12)
C20.2452 (4)0.9659 (6)0.6416 (2)0.0350 (12)
C30.2226 (4)1.0517 (7)0.5909 (2)0.0432 (13)
C40.3060 (4)1.1146 (7)0.5612 (2)0.0414 (13)
C50.4049 (4)1.0950 (6)0.5811 (2)0.0400 (13)
C60.1127 (5)1.0806 (9)0.5643 (3)0.0680 (19)
H6A0.09231.18730.57170.102*
H6B0.06531.00980.58250.102*
H6C0.11401.06210.52260.102*
C70.2410 (4)0.8221 (6)0.7213 (2)0.0357 (12)
C80.2041 (4)0.7275 (6)0.7696 (2)0.0354 (12)
C90.0988 (5)0.7064 (7)0.7768 (3)0.0431 (13)
C100.0636 (5)0.6169 (8)0.8237 (3)0.0578 (17)
H10−0.00570.60220.82880.069*
C110.1315 (5)0.5488 (8)0.8632 (3)0.0604 (18)
H110.10740.48950.89470.072*
C120.2329 (5)0.5690 (8)0.8558 (3)0.0536 (16)
H120.27790.52260.88210.064*
C130.2693 (4)0.6560 (7)0.8104 (3)0.0453 (14)
H130.33900.66860.80630.054*
U11U22U33U12U13U23
Br10.0851 (6)0.0621 (5)0.0383 (4)0.0019 (4)−0.0058 (3)0.0082 (3)
Br20.0640 (5)0.0757 (5)0.0609 (5)−0.0265 (4)0.0124 (3)0.0054 (4)
O10.029 (2)0.079 (3)0.054 (3)0.0054 (19)0.0065 (19)0.007 (2)
N10.027 (2)0.048 (3)0.039 (3)−0.0008 (19)−0.0055 (19)0.001 (2)
N20.028 (2)0.045 (3)0.037 (3)0.0009 (18)−0.0012 (19)−0.002 (2)
N30.056 (3)0.068 (4)0.060 (4)−0.006 (3)0.003 (3)−0.005 (3)
C10.029 (3)0.043 (3)0.033 (3)−0.004 (2)0.000 (2)−0.003 (2)
C20.033 (3)0.040 (3)0.032 (3)−0.001 (2)0.000 (2)−0.004 (2)
C30.048 (3)0.046 (3)0.036 (3)0.007 (3)−0.002 (3)−0.005 (3)
C40.050 (3)0.041 (3)0.034 (3)−0.002 (3)0.000 (3)−0.003 (2)
C50.045 (3)0.040 (3)0.036 (3)−0.007 (2)0.006 (3)0.000 (2)
C60.071 (5)0.076 (5)0.057 (4)0.012 (4)0.011 (4)0.010 (4)
C70.031 (3)0.040 (3)0.036 (3)−0.001 (2)0.004 (2)−0.007 (2)
C80.038 (3)0.034 (3)0.034 (3)−0.002 (2)0.004 (2)−0.004 (2)
C90.044 (3)0.044 (3)0.041 (3)0.001 (3)0.009 (3)−0.006 (3)
C100.054 (4)0.061 (4)0.059 (4)−0.008 (3)0.023 (3)−0.001 (3)
C110.082 (5)0.051 (4)0.048 (4)−0.004 (3)0.018 (3)0.006 (3)
C120.066 (4)0.052 (4)0.043 (4)0.001 (3)−0.004 (3)0.008 (3)
C130.042 (3)0.047 (3)0.047 (4)−0.001 (3)−0.006 (3)0.003 (3)
Br1—C41.897 (6)C4—C51.389 (8)
Br2—C51.907 (5)C6—H6A0.9600
O1—C91.354 (7)C6—H6B0.9600
O1—H10.8200C6—H6C0.9600
N1—C71.369 (7)C7—C81.442 (8)
N1—C11.382 (7)C8—C131.402 (8)
N1—H1A0.9504C8—C91.408 (8)
N2—C71.338 (7)C9—C101.388 (8)
N2—C21.398 (7)C10—C111.392 (9)
N3—C11.370 (7)C10—H100.9300
N3—C51.387 (8)C11—C121.358 (9)
C1—C21.415 (7)C11—H110.9300
C2—C31.394 (8)C12—C131.355 (8)
C3—C41.396 (8)C12—H120.9300
C3—C61.589 (9)C13—H130.9300
Cg1···Cg2i3.760 (3)Cg1···Cg3ii3.723 (3)
C9—O1—H1109.5C3—C6—H6C109.5
C7—N1—C1107.9 (4)H6A—C6—H6C109.5
C7—N1—H1A131.3H6B—C6—H6C109.5
C1—N1—H1A120.8N2—C7—N1111.7 (5)
C7—N2—C2105.9 (4)N2—C7—C8123.6 (5)
C1—N3—C5115.6 (5)N1—C7—C8124.7 (5)
N3—C1—N1131.4 (5)C13—C8—C9118.1 (5)
N3—C1—C2123.1 (5)C13—C8—C7122.4 (5)
N1—C1—C2105.6 (4)C9—C8—C7119.5 (5)
C3—C2—N2130.1 (5)O1—C9—C10119.1 (6)
C3—C2—C1121.0 (5)O1—C9—C8121.6 (5)
N2—C2—C1109.0 (5)C10—C9—C8119.3 (6)
C2—C3—C4115.5 (5)C9—C10—C11120.4 (6)
C2—C3—C6126.1 (5)C9—C10—H10119.8
C4—C3—C6118.4 (5)C11—C10—H10119.8
C5—C4—C3122.4 (5)C12—C11—C10120.0 (6)
C5—C4—Br1120.5 (4)C12—C11—H11120.0
C3—C4—Br1117.1 (4)C10—C11—H11120.0
N3—C5—C4122.5 (5)C13—C12—C11120.8 (6)
N3—C5—Br2115.9 (4)C13—C12—H12119.6
C4—C5—Br2121.6 (4)C11—C12—H12119.6
C3—C6—H6A109.5C12—C13—C8121.5 (5)
C3—C6—H6B109.5C12—C13—H13119.3
H6A—C6—H6B109.5C8—C13—H13119.3
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1iii0.951.902.839 (6)171
O1—H1···N20.821.842.573 (6)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.951.902.839 (6)171
O1—H1⋯N20.821.842.573 (6)149

Symmetry code: (i) .

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