Literature DB >> 22058999

2-(5,6-Dihydro-benzimidazo[1,2-c]quinazolin-6-yl)-5-meth-oxy-phenol.

Naser Eltaher Eltayeb, Siang Guan Teoh, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title quinazoline derivative, C(21)H(17)N(3)O(2), the benzimidazole unit makes dihedral angles of 8.29 (5) and 81.79 (5)° with the benzene rings of the quinazoline and meth-oxy-phenol units, respectively. The nitro-gen-containing six-membered ring adopts a half-chair conformation. In the crystal, the mol-ecules are linked through O-H⋯N hydrogen bonds into screw chains along the b axis; adjacent chains are further connected by N-H⋯O hydrogen bonds, thereby forming a two-dimensional network lying parallel to the bc plane. Weak C-H⋯π and π⋯π inter-actions with centroid-centroid distances of 3.5258 (8) and 3.7184 (7) Å are present and N⋯O [2.6816 (15) and 3.0519 (15) Å] short contacts also occur.

Entities:  

Year:  2011        PMID: 22058999      PMCID: PMC3200720          DOI: 10.1107/S1600536811034027

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to benzoheterocyclic derivatives and their applications, see: Arienzo et al. (2007 ▶); Chassaing et al. (2008 ▶); Galarcei et al. (2008 ▶); Kumar & Rajput (2009 ▶); Kung et al. (2009 ▶); Podunavac-Kuzmanovic & Cvetkovic (2010 ▶); Via et al. (2001 ▶); Xue et al. (2011 ▶); Zhang et al. (2009 ▶). For related structures, see: Eltayeb et al. (2007 ▶, 2009 ▶, 2011a ▶,b ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H17N3O2 M = 343.38 Monoclinic, a = 9.5408 (1) Å b = 15.6503 (2) Å c = 11.7609 (1) Å β = 110.408 (1)° V = 1645.87 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.28 × 0.25 × 0.22 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.974, T max = 0.980 31713 measured reflections 6610 independent reflections 4637 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.139 S = 1.05 6610 reflections 244 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811034027/hb6371sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034027/hb6371Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811034027/hb6371Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H17N3O2F(000) = 720
Mr = 343.38Dx = 1.386 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6610 reflections
a = 9.5408 (1) Åθ = 2.3–33.8°
b = 15.6503 (2) ŵ = 0.09 mm1
c = 11.7609 (1) ÅT = 100 K
β = 110.408 (1)°Block, pale yellow
V = 1645.87 (3) Å30.28 × 0.25 × 0.22 mm
Z = 4
Bruker APEXII CCD diffractometer6610 independent reflections
Radiation source: sealed tube4637 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 33.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −14→14
Tmin = 0.974, Tmax = 0.980k = −24→22
31713 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0535P)2 + 0.6883P] where P = (Fo2 + 2Fc2)/3
6610 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.14755 (11)0.22525 (6)0.27396 (8)0.0225 (2)
O20.48793 (10)0.20256 (6)0.67860 (8)0.01967 (19)
N10.09967 (11)0.45602 (7)0.26995 (9)0.0155 (2)
N2−0.06837 (12)0.56241 (7)0.21091 (10)0.0195 (2)
N30.32315 (12)0.45264 (7)0.22680 (10)0.0181 (2)
C1−0.00334 (14)0.44114 (8)0.32723 (11)0.0169 (2)
C2−0.01453 (15)0.37959 (9)0.40964 (12)0.0214 (3)
H2A0.05590.33440.43610.026*
C3−0.13327 (16)0.38755 (9)0.45104 (13)0.0261 (3)
H3A−0.14380.34710.50780.031*
C4−0.23825 (16)0.45360 (10)0.41148 (14)0.0276 (3)
H4A−0.31930.45620.44070.033*
C5−0.22662 (15)0.51499 (9)0.33108 (13)0.0251 (3)
H5A−0.29750.56000.30510.030*
C6−0.10683 (14)0.50852 (8)0.28924 (11)0.0185 (2)
C70.05266 (14)0.52788 (8)0.19987 (11)0.0165 (2)
C80.13443 (14)0.55651 (8)0.12348 (11)0.0170 (2)
C90.08353 (15)0.62216 (8)0.03824 (11)0.0206 (3)
H9A−0.00700.65100.03030.025*
C100.16415 (16)0.64543 (9)−0.03470 (11)0.0230 (3)
H10A0.12820.6894−0.09350.028*
C110.29812 (16)0.60404 (9)−0.02133 (11)0.0233 (3)
H11A0.35340.6199−0.07130.028*
C120.35181 (16)0.53980 (9)0.06425 (11)0.0209 (3)
H12A0.44440.51280.07370.025*
C130.26941 (14)0.51475 (8)0.13664 (11)0.0171 (2)
C140.21403 (13)0.39827 (8)0.25378 (10)0.0157 (2)
H14A0.16590.35930.18360.019*
C150.29119 (13)0.34584 (8)0.36554 (10)0.0148 (2)
C160.25404 (13)0.25964 (8)0.37158 (11)0.0159 (2)
C170.32374 (13)0.21322 (8)0.47774 (10)0.0162 (2)
H17A0.29940.15470.48210.019*
C180.42921 (13)0.25281 (8)0.57752 (10)0.0154 (2)
C190.46985 (14)0.33780 (8)0.57194 (11)0.0171 (2)
H19A0.54380.36430.63890.021*
C200.39884 (13)0.38268 (8)0.46523 (11)0.0163 (2)
H20A0.42510.44080.46050.020*
C210.57945 (16)0.24524 (10)0.78736 (12)0.0258 (3)
H21A0.60140.20600.85630.039*
H21B0.52610.29530.80160.039*
H21C0.67330.26350.77830.039*
H1N30.3958 (19)0.4194 (12)0.2166 (15)0.028 (4)*
H1O10.126 (2)0.1665 (15)0.291 (2)0.059 (6)*
U11U22U33U12U13U23
O10.0248 (5)0.0166 (5)0.0191 (4)−0.0058 (4)−0.0014 (4)0.0006 (3)
O20.0217 (4)0.0185 (4)0.0154 (4)−0.0019 (4)0.0021 (3)0.0027 (3)
N10.0152 (5)0.0139 (5)0.0175 (4)0.0018 (4)0.0059 (4)0.0019 (4)
N20.0190 (5)0.0167 (5)0.0214 (5)0.0031 (4)0.0054 (4)0.0003 (4)
N30.0185 (5)0.0166 (5)0.0214 (5)0.0033 (4)0.0098 (4)0.0042 (4)
C10.0155 (5)0.0172 (6)0.0180 (5)−0.0007 (4)0.0057 (4)−0.0019 (4)
C20.0211 (6)0.0196 (6)0.0253 (6)0.0019 (5)0.0103 (5)0.0025 (5)
C30.0277 (7)0.0241 (7)0.0316 (7)−0.0024 (6)0.0166 (6)0.0014 (5)
C40.0239 (7)0.0271 (7)0.0378 (8)−0.0020 (6)0.0184 (6)−0.0052 (6)
C50.0201 (6)0.0220 (7)0.0345 (7)0.0032 (5)0.0113 (5)−0.0031 (5)
C60.0168 (6)0.0164 (6)0.0214 (5)0.0010 (5)0.0054 (4)−0.0025 (4)
C70.0175 (5)0.0130 (5)0.0165 (5)0.0007 (4)0.0028 (4)−0.0004 (4)
C80.0203 (6)0.0133 (5)0.0160 (5)−0.0011 (4)0.0048 (4)−0.0005 (4)
C90.0243 (6)0.0156 (6)0.0185 (5)−0.0002 (5)0.0031 (5)0.0011 (4)
C100.0311 (7)0.0169 (6)0.0169 (5)−0.0034 (5)0.0034 (5)0.0021 (4)
C110.0313 (7)0.0207 (6)0.0181 (5)−0.0069 (5)0.0091 (5)−0.0005 (5)
C120.0244 (6)0.0194 (6)0.0201 (6)−0.0012 (5)0.0094 (5)−0.0002 (5)
C130.0215 (6)0.0134 (5)0.0160 (5)−0.0015 (4)0.0061 (4)−0.0002 (4)
C140.0170 (5)0.0134 (5)0.0170 (5)0.0017 (4)0.0063 (4)0.0006 (4)
C150.0150 (5)0.0127 (5)0.0173 (5)0.0009 (4)0.0064 (4)0.0009 (4)
C160.0144 (5)0.0154 (5)0.0166 (5)0.0001 (4)0.0039 (4)−0.0002 (4)
C170.0173 (5)0.0126 (5)0.0181 (5)−0.0005 (4)0.0056 (4)0.0010 (4)
C180.0145 (5)0.0162 (6)0.0155 (5)0.0014 (4)0.0053 (4)0.0013 (4)
C190.0169 (5)0.0164 (6)0.0173 (5)−0.0027 (4)0.0049 (4)−0.0024 (4)
C200.0171 (5)0.0124 (5)0.0202 (5)−0.0012 (4)0.0077 (4)−0.0003 (4)
C210.0268 (7)0.0277 (7)0.0165 (5)−0.0066 (6)−0.0005 (5)0.0030 (5)
O1—C161.3516 (14)C8—C131.4038 (18)
O1—H1O10.98 (2)C9—C101.386 (2)
O2—C181.3716 (14)C9—H9A0.9500
O2—C211.4373 (15)C10—C111.392 (2)
N1—C71.3739 (15)C10—H10A0.9500
N1—C11.3913 (16)C11—C121.3880 (18)
N1—C141.4793 (15)C11—H11A0.9500
N2—C71.3217 (17)C12—C131.4012 (18)
N2—C61.3894 (17)C12—H12A0.9500
N3—C131.3974 (16)C14—C151.5060 (16)
N3—C141.4626 (16)C14—H14A1.0000
N3—H1N30.908 (18)C15—C201.3863 (16)
C1—C21.3967 (18)C15—C161.4030 (17)
C1—C61.4067 (18)C16—C171.3964 (16)
C2—C31.3859 (19)C17—C181.3964 (17)
C2—H2A0.9500C17—H17A0.9500
C3—C41.401 (2)C18—C191.3934 (17)
C3—H3A0.9500C19—C201.3909 (17)
C4—C51.379 (2)C19—H19A0.9500
C4—H4A0.9500C20—H20A0.9500
C5—C61.3967 (19)C21—H21A0.9800
C5—H5A0.9500C21—H21B0.9800
C7—C81.4509 (18)C21—H21C0.9800
C8—C91.3989 (17)
C16—O1—H1O1110.2 (13)C12—C11—C10120.74 (13)
C18—O2—C21116.28 (10)C12—C11—H11A119.6
C7—N1—C1106.83 (10)C10—C11—H11A119.6
C7—N1—C14121.61 (10)C11—C12—C13119.99 (13)
C1—N1—C14129.58 (10)C11—C12—H12A120.0
C7—N2—C6105.00 (10)C13—C12—H12A120.0
C13—N3—C14117.95 (10)N3—C13—C12121.37 (12)
C13—N3—H1N3113.2 (11)N3—C13—C8119.16 (11)
C14—N3—H1N3109.2 (11)C12—C13—C8119.36 (11)
N1—C1—C2133.57 (12)N3—C14—N1106.57 (10)
N1—C1—C6104.88 (11)N3—C14—C15109.75 (10)
C2—C1—C6121.49 (12)N1—C14—C15112.25 (9)
C3—C2—C1116.84 (12)N3—C14—H14A109.4
C3—C2—H2A121.6N1—C14—H14A109.4
C1—C2—H2A121.6C15—C14—H14A109.4
C2—C3—C4121.79 (13)C20—C15—C16118.87 (11)
C2—C3—H3A119.1C20—C15—C14120.27 (11)
C4—C3—H3A119.1C16—C15—C14120.85 (10)
C5—C4—C3121.50 (13)O1—C16—C17122.33 (11)
C5—C4—H4A119.3O1—C16—C15117.93 (11)
C3—C4—H4A119.3C17—C16—C15119.71 (11)
C4—C5—C6117.53 (13)C16—C17—C18119.96 (11)
C4—C5—H5A121.2C16—C17—H17A120.0
C6—C5—H5A121.2C18—C17—H17A120.0
N2—C6—C5128.86 (12)O2—C18—C19123.50 (11)
N2—C6—C1110.31 (11)O2—C18—C17115.52 (11)
C5—C6—C1120.83 (12)C19—C18—C17120.98 (11)
N2—C7—N1112.91 (11)C20—C19—C18117.94 (11)
N2—C7—C8127.69 (11)C20—C19—H19A121.0
N1—C7—C8119.39 (11)C18—C19—H19A121.0
C9—C8—C13119.79 (12)C15—C20—C19122.49 (11)
C9—C8—C7122.91 (12)C15—C20—H20A118.8
C13—C8—C7117.30 (11)C19—C20—H20A118.8
C10—C9—C8120.52 (13)O2—C21—H21A109.5
C10—C9—H9A119.7O2—C21—H21B109.5
C8—C9—H9A119.7H21A—C21—H21B109.5
C9—C10—C11119.58 (12)O2—C21—H21C109.5
C9—C10—H10A120.2H21A—C21—H21C109.5
C11—C10—H10A120.2H21B—C21—H21C109.5
C7—N1—C1—C2−178.82 (14)C14—N3—C13—C835.42 (16)
C14—N1—C1—C217.3 (2)C11—C12—C13—N3−177.47 (12)
C7—N1—C1—C6−1.59 (13)C11—C12—C13—C8−1.42 (19)
C14—N1—C1—C6−165.47 (11)C9—C8—C13—N3176.42 (11)
N1—C1—C2—C3177.56 (13)C7—C8—C13—N3−4.28 (17)
C6—C1—C2—C30.70 (19)C9—C8—C13—C120.28 (18)
C1—C2—C3—C40.6 (2)C7—C8—C13—C12179.57 (11)
C2—C3—C4—C5−1.3 (2)C13—N3—C14—N1−49.22 (13)
C3—C4—C5—C60.7 (2)C13—N3—C14—C15−171.00 (10)
C7—N2—C6—C5−179.60 (13)C7—N1—C14—N337.49 (14)
C7—N2—C6—C11.18 (14)C1—N1—C14—N3−160.71 (11)
C4—C5—C6—N2−178.49 (13)C7—N1—C14—C15157.67 (11)
C4—C5—C6—C10.6 (2)C1—N1—C14—C15−40.53 (16)
N1—C1—C6—N20.28 (14)N3—C14—C15—C2042.18 (15)
C2—C1—C6—N2177.93 (11)N1—C14—C15—C20−76.13 (14)
N1—C1—C6—C5−179.00 (11)N3—C14—C15—C16−138.89 (12)
C2—C1—C6—C5−1.36 (19)N1—C14—C15—C16102.80 (13)
C6—N2—C7—N1−2.29 (14)C20—C15—C16—O1179.23 (11)
C6—N2—C7—C8176.73 (12)C14—C15—C16—O10.28 (17)
C1—N1—C7—N22.53 (14)C20—C15—C16—C171.05 (18)
C14—N1—C7—N2167.97 (10)C14—C15—C16—C17−177.90 (11)
C1—N1—C7—C8−176.58 (10)O1—C16—C17—C18−177.68 (11)
C14—N1—C7—C8−11.14 (17)C15—C16—C17—C180.42 (18)
N2—C7—C8—C9−7.4 (2)C21—O2—C18—C198.93 (17)
N1—C7—C8—C9171.60 (11)C21—O2—C18—C17−171.12 (11)
N2—C7—C8—C13173.36 (12)C16—C17—C18—O2178.11 (11)
N1—C7—C8—C13−7.68 (17)C16—C17—C18—C19−1.94 (18)
C13—C8—C9—C101.00 (19)O2—C18—C19—C20−178.13 (11)
C7—C8—C9—C10−178.26 (12)C17—C18—C19—C201.92 (18)
C8—C9—C10—C11−1.12 (19)C16—C15—C20—C19−1.06 (18)
C9—C10—C11—C120.0 (2)C14—C15—C20—C19177.89 (11)
C10—C11—C12—C131.3 (2)C18—C19—C20—C15−0.41 (18)
C14—N3—C13—C12−148.52 (12)
Cg4 is the centroid of the C15–C20 ring.
D—H···AD—HH···AD···AD—H···A
N3—H1N3···O2i0.907 (19)2.211 (19)3.0519 (15)153.8 (17)
O1—H1O1···N2ii0.98 (2)1.72 (2)2.6816 (15)168 (2)
C2—H2A···Cg40.952.853.6277 (16)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg4 is the centroid of the C15–C20 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯O2i0.907 (19)2.211 (19)3.0519 (15)153.8 (17)
O1—H1O1⋯N2ii0.98 (2)1.72 (2)2.6816 (15)168 (2)
C2—H2ACg40.952.853.6277 (16)140

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

10.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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