| Literature DB >> 21578934 |
Naser Eltaher Eltayeb, Siang Guan Teoh, Rohana Adnan, Hoong-Kun Fun, Suchada Chantrapromma.
Abstract
The title compound, 0.75C(15)H(14)N(2)O·0.25C(15)H(14)N(2)O, is a co-crystal of 2-methyl-6-(6-methyl-1H-benzimidazol-2-yl)phenol as the major component and 2-methyl-6-(5-methyl-1H-benz-imidazol-2-yl)phenol as the minor component. The refined site-occupancy ratio is 0.746 (4)/0.254 (4). The conformations of both components are identical except for that of the methyl substituent on the benzene ring of the benzimidazole unit which is positionally disordered over two positions. The mol-ecule is essentially planar, the dihedral angle between the benzimidazole plane and the benzene ring being 3.49 (4)°. An intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. In the crystal packing, mol-ecules are linked through N-H⋯O hydrogen bonds into chains along [201]. These chains are stacked approximately along the a-axis direction. The crystal packing is further stabilized by weak N-H⋯O and O⋯H⋯N hydrogen bonds, together with weak inter-molecular C-H⋯π inter-actions. A π-π inter-action with a centroid-centroid distance of 3.6241 (6) Å is also observed between the substituted phenyl ring and that of the benzimidazole system.Entities:
Year: 2009 PMID: 21578934 PMCID: PMC2972110 DOI: 10.1107/S1600536809049770
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 0.75C15H14N2O·0.25C15H14N2O | |
| Monoclinic, | Melting point: ?' K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 3703 reflections | |
| θ = 2.0–31.0° | |
| µ = 0.09 mm−1 | |
| β = 105.085 (1)° | |
| Needle, yellow | |
| 0.59 × 0.17 × 0.10 mm |
| Bruker APEXII CCD area-detector diffractometer | 3703 independent reflections |
| Radiation source: sealed tube | 3165 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 34431 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3703 reflections | (Δ/σ)max = 0.001 |
| 184 parameters | Δρmax = 0.61 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| O1 | 1.19279 (16) | 0.73306 (4) | 0.38129 (6) | 0.01798 (17) | |
| N1 | 0.75983 (18) | 0.80945 (5) | 0.29676 (7) | 0.01616 (18) | |
| N2 | 0.51410 (19) | 0.79954 (5) | 0.11676 (8) | 0.01659 (18) | |
| C1 | 1.1529 (2) | 0.70454 (5) | 0.27765 (8) | 0.01503 (19) | |
| C2 | 1.3414 (2) | 0.65397 (5) | 0.26490 (9) | 0.0167 (2) | |
| C3 | 1.3081 (2) | 0.62518 (6) | 0.15941 (10) | 0.0202 (2) | |
| H3A | 1.4326 | 0.5918 | 0.1501 | 0.024* | |
| C4 | 1.0927 (2) | 0.64511 (6) | 0.06716 (10) | 0.0226 (2) | |
| H4A | 1.0756 | 0.6256 | −0.0029 | 0.027* | |
| C5 | 0.9042 (2) | 0.69426 (6) | 0.08074 (9) | 0.0189 (2) | |
| H5A | 0.7591 | 0.7073 | 0.0196 | 0.023* | |
| C6 | 0.9303 (2) | 0.72445 (5) | 0.18570 (8) | 0.01520 (19) | |
| C7 | 0.7363 (2) | 0.77685 (5) | 0.20056 (8) | 0.01523 (19) | |
| C8 | 0.3873 (2) | 0.85056 (5) | 0.16229 (9) | 0.0164 (2) | |
| C9 | 0.1586 (2) | 0.89213 (5) | 0.11465 (9) | 0.0187 (2) | |
| H9A | 0.0587 | 0.8876 | 0.0398 | 0.022* | |
| C10 | 0.0862 (2) | 0.94063 (6) | 0.18357 (10) | 0.0197 (2) | |
| H10A | −0.0692 | 0.9702 | 0.1537 | 0.024* | 0.254 (4) |
| C11 | 0.2396 (2) | 0.94650 (6) | 0.29702 (10) | 0.0202 (2) | |
| H11A | 0.1853 | 0.9801 | 0.3432 | 0.024* | 0.746 (4) |
| C12 | 0.4672 (2) | 0.90501 (6) | 0.34381 (9) | 0.0199 (2) | |
| H12A | 0.5665 | 0.9094 | 0.4188 | 0.024* | |
| C13 | 0.5427 (2) | 0.85640 (5) | 0.27486 (9) | 0.0163 (2) | |
| C14 | 1.5751 (2) | 0.63299 (6) | 0.36352 (9) | 0.0208 (2) | |
| H14A | 1.6860 | 0.5988 | 0.3405 | 0.031* | |
| H14B | 1.4973 | 0.6156 | 0.4216 | 0.031* | |
| H14C | 1.6918 | 0.6711 | 0.3916 | 0.031* | |
| C15 | −0.1576 (3) | 0.98865 (7) | 0.13834 (13) | 0.0201 (3) | 0.746 (4) |
| H15A | −0.2119 | 0.9866 | 0.0577 | 0.030* | 0.746 (4) |
| H15B | −0.1006 | 1.0336 | 0.1620 | 0.030* | 0.746 (4) |
| H15C | −0.3142 | 0.9760 | 0.1668 | 0.030* | 0.746 (4) |
| C15A | 0.1355 (10) | 0.9949 (2) | 0.3651 (5) | 0.0267 (11) | 0.254 (4) |
| H15D | 0.2593 | 0.9959 | 0.4395 | 0.040* | 0.254 (4) |
| H15E | −0.0496 | 0.9820 | 0.3689 | 0.040* | 0.254 (4) |
| H15F | 0.1282 | 1.0387 | 0.3317 | 0.040* | 0.254 (4) |
| H1N2 | 0.445 (4) | 0.7809 (10) | 0.0451 (16) | 0.041 (5)* | |
| H1O1 | 1.058 (5) | 0.7671 (11) | 0.3717 (19) | 0.058 (6)* |
| O1 | 0.0181 (4) | 0.0218 (4) | 0.0123 (3) | 0.0025 (3) | 0.0008 (3) | −0.0007 (3) |
| N1 | 0.0156 (4) | 0.0180 (4) | 0.0141 (4) | 0.0009 (3) | 0.0025 (3) | 0.0006 (3) |
| N2 | 0.0152 (4) | 0.0189 (4) | 0.0138 (4) | 0.0011 (3) | 0.0005 (3) | 0.0000 (3) |
| C1 | 0.0143 (4) | 0.0174 (4) | 0.0126 (4) | −0.0020 (3) | 0.0021 (3) | 0.0010 (3) |
| C2 | 0.0149 (4) | 0.0180 (4) | 0.0164 (5) | −0.0004 (3) | 0.0026 (3) | 0.0014 (4) |
| C3 | 0.0183 (5) | 0.0219 (5) | 0.0196 (5) | 0.0025 (4) | 0.0037 (4) | −0.0019 (4) |
| C4 | 0.0211 (5) | 0.0272 (5) | 0.0181 (5) | 0.0024 (4) | 0.0030 (4) | −0.0046 (4) |
| C5 | 0.0174 (5) | 0.0238 (5) | 0.0137 (4) | 0.0013 (4) | 0.0007 (4) | −0.0014 (4) |
| C6 | 0.0142 (4) | 0.0174 (4) | 0.0133 (4) | −0.0003 (3) | 0.0024 (3) | 0.0001 (3) |
| C7 | 0.0136 (4) | 0.0175 (4) | 0.0136 (4) | −0.0005 (3) | 0.0019 (3) | 0.0018 (3) |
| C8 | 0.0148 (4) | 0.0172 (4) | 0.0163 (5) | −0.0010 (3) | 0.0024 (3) | 0.0008 (3) |
| C9 | 0.0157 (4) | 0.0201 (5) | 0.0184 (5) | 0.0001 (4) | 0.0010 (4) | 0.0022 (4) |
| C10 | 0.0162 (4) | 0.0194 (5) | 0.0228 (5) | −0.0002 (4) | 0.0037 (4) | 0.0032 (4) |
| C11 | 0.0197 (5) | 0.0195 (5) | 0.0216 (5) | 0.0008 (4) | 0.0060 (4) | −0.0005 (4) |
| C12 | 0.0201 (5) | 0.0220 (5) | 0.0172 (5) | 0.0007 (4) | 0.0040 (4) | −0.0007 (4) |
| C13 | 0.0152 (4) | 0.0174 (4) | 0.0157 (5) | −0.0002 (3) | 0.0027 (3) | 0.0020 (3) |
| C14 | 0.0177 (5) | 0.0234 (5) | 0.0192 (5) | 0.0033 (4) | 0.0012 (4) | 0.0023 (4) |
| C15 | 0.0167 (6) | 0.0179 (7) | 0.0243 (7) | 0.0024 (5) | 0.0027 (5) | 0.0019 (5) |
| C15A | 0.023 (2) | 0.024 (2) | 0.035 (3) | 0.0009 (17) | 0.0110 (19) | −0.0034 (18) |
| O1—C1 | 1.3639 (12) | C9—H9A | 0.9300 |
| O1—H1O1 | 0.93 (2) | C10—C11 | 1.4100 (16) |
| N1—C7 | 1.3291 (13) | C10—C15 | 1.5217 (18) |
| N1—C13 | 1.3919 (13) | C10—H10A | 0.9599 |
| N2—C7 | 1.3706 (13) | C11—C12 | 1.3902 (15) |
| N2—C8 | 1.3842 (14) | C11—C15A | 1.454 (5) |
| N2—H1N2 | 0.936 (19) | C11—H11A | 0.9600 |
| C1—C2 | 1.4045 (14) | C12—C13 | 1.3996 (15) |
| C1—C6 | 1.4124 (14) | C12—H12A | 0.9300 |
| C2—C3 | 1.3904 (15) | C14—H14A | 0.9600 |
| C2—C14 | 1.4990 (15) | C14—H14B | 0.9600 |
| C3—C4 | 1.3951 (16) | C14—H14C | 0.9600 |
| C3—H3A | 0.9300 | C15—H10A | 0.5624 |
| C4—C5 | 1.3877 (15) | C15—H15A | 0.9600 |
| C4—H4A | 0.9300 | C15—H15B | 0.9600 |
| C5—C6 | 1.4009 (14) | C15—H15C | 0.9600 |
| C5—H5A | 0.9300 | C15A—H11A | 0.5030 |
| C6—C7 | 1.4572 (14) | C15A—H15D | 0.9600 |
| C8—C9 | 1.3970 (14) | C15A—H15E | 0.9600 |
| C8—C13 | 1.4035 (14) | C15A—H15F | 0.9600 |
| C9—C10 | 1.3915 (16) | ||
| C1—O1—H1O1 | 105.0 (14) | C9—C10—C15 | 120.98 (11) |
| C7—N1—C13 | 105.67 (8) | C11—C10—C15 | 118.62 (11) |
| C7—N2—C8 | 106.97 (9) | C9—C10—H10A | 119.8 |
| C7—N2—H1N2 | 127.1 (12) | C11—C10—H10A | 119.8 |
| C8—N2—H1N2 | 125.5 (12) | C12—C11—C10 | 121.86 (10) |
| O1—C1—C2 | 117.66 (9) | C12—C11—C15A | 121.4 (2) |
| O1—C1—C6 | 121.79 (9) | C10—C11—C15A | 116.6 (2) |
| C2—C1—C6 | 120.55 (9) | C12—C11—H11A | 119.1 |
| C3—C2—C1 | 118.62 (10) | C10—C11—H11A | 119.0 |
| C3—C2—C14 | 121.45 (10) | C11—C12—C13 | 118.11 (10) |
| C1—C2—C14 | 119.92 (9) | C11—C12—H12A | 120.9 |
| C2—C3—C4 | 121.60 (10) | C13—C12—H12A | 120.9 |
| C2—C3—H3A | 119.2 | N1—C13—C12 | 131.12 (10) |
| C4—C3—H3A | 119.2 | N1—C13—C8 | 109.24 (9) |
| C5—C4—C3 | 119.50 (10) | C12—C13—C8 | 119.63 (10) |
| C5—C4—H4A | 120.2 | C2—C14—H14A | 109.5 |
| C3—C4—H4A | 120.2 | C2—C14—H14B | 109.5 |
| C4—C5—C6 | 120.63 (10) | H14A—C14—H14B | 109.5 |
| C4—C5—H5A | 119.7 | C2—C14—H14C | 109.5 |
| C6—C5—H5A | 119.7 | H14A—C14—H14C | 109.5 |
| C5—C6—C1 | 119.07 (9) | H14B—C14—H14C | 109.5 |
| C5—C6—C7 | 121.12 (9) | C10—C15—H15A | 109.5 |
| C1—C6—C7 | 119.80 (9) | H10A—C15—H15A | 107.6 |
| N1—C7—N2 | 112.23 (9) | C10—C15—H15B | 109.5 |
| N1—C7—C6 | 123.58 (9) | H10A—C15—H15B | 111.4 |
| N2—C7—C6 | 124.17 (9) | C10—C15—H15C | 109.5 |
| N2—C8—C9 | 131.51 (10) | H10A—C15—H15C | 109.4 |
| N2—C8—C13 | 105.89 (9) | C11—C15A—H15D | 109.5 |
| C9—C8—C13 | 122.58 (10) | C11—C15A—H15E | 109.5 |
| C10—C9—C8 | 117.42 (10) | H15D—C15A—H15E | 109.5 |
| C10—C9—H9A | 121.3 | C11—C15A—H15F | 109.5 |
| C8—C9—H9A | 121.3 | H15D—C15A—H15F | 109.5 |
| C9—C10—C11 | 120.40 (10) | H15E—C15A—H15F | 109.5 |
| O1—C1—C2—C3 | −178.69 (9) | C1—C6—C7—N2 | −179.91 (9) |
| C6—C1—C2—C3 | 1.56 (15) | C7—N2—C8—C9 | 178.20 (11) |
| O1—C1—C2—C14 | 0.27 (14) | C7—N2—C8—C13 | −0.17 (11) |
| C6—C1—C2—C14 | −179.49 (9) | N2—C8—C9—C10 | −178.36 (11) |
| C1—C2—C3—C4 | −0.34 (17) | C13—C8—C9—C10 | −0.22 (16) |
| C14—C2—C3—C4 | −179.28 (10) | C8—C9—C10—C11 | −0.31 (16) |
| C2—C3—C4—C5 | −0.80 (18) | C8—C9—C10—C15 | 179.22 (11) |
| C3—C4—C5—C6 | 0.73 (17) | C9—C10—C11—C12 | 0.42 (17) |
| C4—C5—C6—C1 | 0.46 (16) | C15—C10—C11—C12 | −179.13 (11) |
| C4—C5—C6—C7 | 179.02 (10) | C9—C10—C11—C15A | −175.2 (2) |
| O1—C1—C6—C5 | 178.63 (9) | C15—C10—C11—C15A | 5.2 (3) |
| C2—C1—C6—C5 | −1.62 (15) | C10—C11—C12—C13 | 0.03 (17) |
| O1—C1—C6—C7 | 0.06 (15) | C15A—C11—C12—C13 | 175.5 (2) |
| C2—C1—C6—C7 | 179.81 (9) | C7—N1—C13—C12 | −178.89 (11) |
| C13—N1—C7—N2 | −0.43 (12) | C7—N1—C13—C8 | 0.31 (11) |
| C13—N1—C7—C6 | 177.88 (9) | C11—C12—C13—N1 | 178.57 (10) |
| C8—N2—C7—N1 | 0.39 (12) | C11—C12—C13—C8 | −0.56 (16) |
| C8—N2—C7—C6 | −177.91 (9) | N2—C8—C13—N1 | −0.08 (11) |
| C5—C6—C7—N1 | −176.56 (10) | C9—C8—C13—N1 | −178.63 (9) |
| C1—C6—C7—N1 | 1.98 (15) | N2—C8—C13—C12 | 179.22 (9) |
| C5—C6—C7—N2 | 1.55 (16) | C9—C8—C13—C12 | 0.67 (16) |
| H··· | ||||
| N2—H1N2···O1i | 0.936 (19) | 2.095 (19) | 2.9916 (12) | 160.1 (18) |
| O1—H1O1···N1 | 0.93 (2) | 1.74 (2) | 2.6040 (12) | 153 (2) |
| C15—H15C···Cg3ii | 0.96 | 2.66 | 3.5731 (16) | 160 |
| C15A—H15F···Cg2iii | 0.96 | 2.96 | 3.780 (4) | 144 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.936 (19) | 2.095 (19) | 2.9916 (12) | 160.1 (18) |
| O1—H1 | 0.93 (2) | 1.74 (2) | 2.6040 (12) | 153 (2) |
| C15—H15 | 0.96 | 2.66 | 3.5731 (16) | 160 |
| C15 | 0.96 | 2.96 | 3.780 (4) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg2 and Cg3 are the centroids of the C1–C6 and C8–C13 rings, respectively.