Literature DB >> 22065469

(2-{[2-(1H-Benzimidazol-2-yl-κN)phen-yl]imino-methyl-κN}-5-methyl-phenolato-κO)chloridozinc(II).

Naser Eltaher Eltayeb, Siang Guan Teoh, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title mononuclear complex, [Zn(C(21)H(16)N(3)O)Cl], the Zn(II) ion is coordinated in a distorted tetra-hedral geometry by two benzimidazole N atoms and one phenolate O atom from the tridentate Schiff base ligand and a chloride ligand. The benzimidazole ring system forms dihedral angles of 26.68 (9) and 56.16 (9)° with the adjacent benzene ring and the methyl-phenolate group benzene ring, respectively. In the crystal, mol-ecules are linked by N-H⋯Cl hydrogen bonds into chains along [100]. Furthermore, weak C-H⋯O and C-H⋯π inter-actions, in addition to π-π inter-actions with centroid-centroid distances in the range 3.5826 (13)-3.9681 (13) Å, are also observed.

Entities:  

Year:  2011        PMID: 22065469      PMCID: PMC3200787          DOI: 10.1107/S1600536811030170

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond-length data, see: Allen et al. (1987 ▶). For background to benzimidazoles and their applications, see: Chassaing et al. (2008 ▶); Kucukbay et al. (2003 ▶); Podunavac-Kuzmanovic & Cvetkovic (2010 ▶); Podunavac-Kuzmanovic et al. (1999 ▶); Podunavac-Kuzmanovic & Markov (2006 ▶); Xue et al. (2011 ▶). For related structures, see: Eltayeb et al. (2007 ▶, 2009 ▶); Eltayeb, Teoh, Chantrapromma & Fun (2011 ▶); Eltayeb, Teoh, Yeap & Fun (2011 ▶); Maldonado-Rogado et al. (2007 ▶); Tong & Ye (2004 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

[Zn(C21n class="Species">H16N3O)Cl] M = 427.21 Monoclinic, a = 8.6338 (1) Å b = 19.4952 (2) Å c = 10.9687 (1) Å β = 99.675 (1)° V = 1819.97 (3) Å3 Z = 4 Mo Kα radiation μ = 1.51 mm−1 T = 100 K 0.26 × 0.18 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.694, T max = 0.878 22729 measured reflections 5678 independent reflections 3773 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.088 S = 1.03 5678 reflections 249 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030170/lh6598sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030170/lh6598Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C21H16N3O)Cl]F(000) = 872
Mr = 427.21Dx = 1.559 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5678 reflections
a = 8.6338 (1) Åθ = 2.1–30.7°
b = 19.4952 (2) ŵ = 1.51 mm1
c = 10.9687 (1) ÅT = 100 K
β = 99.675 (1)°Block, yellow
V = 1819.97 (3) Å30.26 × 0.18 × 0.09 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer5678 independent reflections
Radiation source: sealed tube3773 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 30.7°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.694, Tmax = 0.878k = −28→26
22729 measured reflectionsl = −12→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0283P)2 + 0.6885P] where P = (Fo2 + 2Fc2)/3
5678 reflections(Δ/σ)max = 0.001
249 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.66403 (3)0.062335 (13)0.71581 (2)0.03608 (9)
Cl10.50460 (7)0.00213 (4)0.81468 (7)0.05647 (19)
O10.56252 (18)0.11090 (8)0.57283 (14)0.0414 (4)
N10.86821 (19)0.01439 (9)0.71573 (16)0.0330 (4)
N21.1246 (2)−0.00194 (10)0.76330 (18)0.0375 (4)
N30.7792 (2)0.14557 (9)0.79697 (16)0.0349 (4)
C10.9123 (2)−0.03570 (11)0.63665 (19)0.0336 (5)
C20.8211 (3)−0.07198 (12)0.5421 (2)0.0413 (5)
H2A0.7133−0.06510.52210.050*
C30.8977 (3)−0.11859 (13)0.4794 (2)0.0504 (6)
H3A0.8401−0.14470.41670.060*
C41.0616 (3)−0.12755 (13)0.5080 (2)0.0496 (6)
H4A1.1098−0.15900.46280.060*
C51.1522 (3)−0.09105 (12)0.6007 (2)0.0445 (6)
H5A1.2606−0.09670.61900.053*
C61.0740 (3)−0.04558 (11)0.6655 (2)0.0358 (5)
C70.9989 (2)0.03287 (11)0.79017 (19)0.0318 (5)
C81.0111 (2)0.08132 (11)0.89379 (19)0.0332 (5)
C91.1357 (3)0.07388 (12)0.9935 (2)0.0388 (5)
H9A1.20780.03860.99190.047*
C101.1532 (3)0.11775 (13)1.0936 (2)0.0456 (6)
H10A1.23700.11231.15820.055*
C111.0461 (3)0.16957 (14)1.0971 (2)0.0520 (7)
H11A1.05670.19861.16530.062*
C120.9230 (3)0.17893 (13)1.0006 (2)0.0451 (6)
H12A0.85170.21441.00420.054*
C130.9045 (2)0.13597 (11)0.89831 (19)0.0351 (5)
C140.7407 (2)0.20702 (12)0.7581 (2)0.0374 (5)
H14A0.79120.24300.80420.045*
C150.6287 (2)0.22529 (11)0.6517 (2)0.0362 (5)
C160.6017 (3)0.29611 (12)0.6307 (2)0.0438 (6)
H16A0.65030.32730.68900.053*
C170.5065 (3)0.32035 (13)0.5274 (2)0.0470 (6)
H17A0.48930.36730.51720.056*
C180.4349 (3)0.27452 (12)0.4370 (2)0.0411 (5)
C190.4615 (3)0.20532 (12)0.4549 (2)0.0408 (5)
H19A0.41700.17530.39280.049*
C200.5529 (2)0.17729 (12)0.5628 (2)0.0365 (5)
C210.3284 (3)0.29989 (14)0.3235 (2)0.0541 (7)
H21A0.32990.26810.25690.081*
H21B0.36400.34400.30060.081*
H21C0.22320.30380.34050.081*
H1N11.208 (3)0.0047 (13)0.793 (2)0.051 (8)*
U11U22U33U12U13U23
Zn10.02462 (12)0.03720 (15)0.04474 (16)0.00021 (11)0.00096 (10)0.00267 (12)
Cl10.0295 (3)0.0641 (4)0.0770 (5)−0.0005 (3)0.0123 (3)0.0210 (4)
O10.0393 (8)0.0357 (9)0.0447 (9)−0.0003 (7)−0.0063 (7)0.0032 (7)
N10.0269 (8)0.0347 (10)0.0367 (9)−0.0008 (7)0.0029 (7)0.0039 (8)
N20.0252 (9)0.0420 (11)0.0433 (11)0.0027 (9)0.0000 (8)0.0006 (9)
N30.0280 (8)0.0382 (10)0.0372 (10)0.0010 (8)0.0018 (7)−0.0020 (8)
C10.0344 (11)0.0308 (11)0.0357 (11)0.0002 (9)0.0062 (9)0.0037 (9)
C20.0374 (12)0.0410 (14)0.0442 (13)−0.0029 (10)0.0030 (10)0.0003 (11)
C30.0646 (17)0.0414 (14)0.0440 (14)−0.0089 (13)0.0054 (12)−0.0046 (12)
C40.0651 (17)0.0369 (14)0.0507 (15)0.0040 (12)0.0211 (13)−0.0006 (11)
C50.0437 (13)0.0407 (13)0.0505 (14)0.0077 (11)0.0118 (11)0.0068 (12)
C60.0337 (11)0.0356 (12)0.0388 (12)0.0015 (9)0.0079 (9)0.0054 (10)
C70.0262 (9)0.0350 (11)0.0340 (11)0.0007 (9)0.0043 (8)0.0070 (9)
C80.0288 (10)0.0352 (12)0.0356 (11)−0.0040 (9)0.0055 (8)0.0050 (9)
C90.0322 (11)0.0425 (13)0.0401 (12)−0.0009 (10)0.0014 (9)0.0066 (10)
C100.0396 (12)0.0573 (16)0.0365 (12)−0.0095 (12)−0.0038 (10)0.0043 (11)
C110.0538 (15)0.0623 (17)0.0377 (13)−0.0100 (14)0.0017 (11)−0.0110 (12)
C120.0430 (13)0.0491 (15)0.0429 (13)0.0009 (11)0.0061 (10)−0.0089 (11)
C130.0281 (10)0.0392 (12)0.0367 (11)−0.0046 (9)0.0021 (8)0.0006 (10)
C140.0331 (11)0.0389 (13)0.0400 (12)0.0001 (10)0.0060 (9)−0.0046 (10)
C150.0327 (11)0.0366 (12)0.0398 (12)0.0038 (9)0.0075 (9)0.0011 (10)
C160.0417 (13)0.0394 (13)0.0497 (14)0.0029 (11)0.0056 (11)−0.0042 (11)
C170.0442 (13)0.0387 (14)0.0581 (15)0.0063 (11)0.0084 (12)0.0055 (12)
C180.0344 (11)0.0458 (14)0.0440 (13)0.0070 (10)0.0089 (10)0.0078 (11)
C190.0370 (12)0.0460 (14)0.0385 (12)−0.0024 (10)0.0036 (9)−0.0001 (10)
C200.0272 (10)0.0426 (13)0.0402 (12)0.0003 (9)0.0070 (9)−0.0010 (10)
C210.0474 (14)0.0585 (17)0.0544 (15)0.0114 (13)0.0022 (12)0.0111 (13)
Zn1—O11.9137 (15)C8—C131.415 (3)
Zn1—N11.9954 (17)C9—C101.380 (3)
Zn1—N32.0292 (18)C9—H9A0.9300
Zn1—Cl12.2249 (7)C10—C111.375 (3)
O1—C201.300 (3)C10—H10A0.9300
N1—C71.327 (2)C11—C121.380 (3)
N1—C11.401 (3)C11—H11A0.9300
N2—C71.354 (3)C12—C131.388 (3)
N2—C61.381 (3)C12—H12A0.9300
N2—H1N10.75 (3)C14—C151.430 (3)
N3—C141.296 (3)C14—H14A0.9300
N3—C131.427 (2)C15—C161.413 (3)
C1—C21.386 (3)C15—C201.428 (3)
C1—C61.392 (3)C16—C171.367 (3)
C2—C31.375 (3)C16—H16A0.9300
C2—H2A0.9300C17—C181.399 (3)
C3—C41.408 (4)C17—H17A0.9300
C3—H3A0.9300C18—C191.377 (3)
C4—C51.373 (3)C18—C211.501 (3)
C4—H4A0.9300C19—C201.417 (3)
C5—C61.381 (3)C19—H19A0.9300
C5—H5A0.9300C21—H21A0.9600
C7—C81.468 (3)C21—H21B0.9600
C8—C91.406 (3)C21—H21C0.9600
O1—Zn1—N1120.95 (7)C10—C9—H9A119.3
O1—Zn1—N395.00 (7)C8—C9—H9A119.3
N1—Zn1—N390.39 (7)C11—C10—C9119.6 (2)
O1—Zn1—Cl1115.14 (5)C11—C10—H10A120.2
N1—Zn1—Cl1111.84 (5)C9—C10—H10A120.2
N3—Zn1—Cl1120.39 (6)C10—C11—C12120.7 (2)
C20—O1—Zn1125.15 (14)C10—C11—H11A119.7
C7—N1—C1106.20 (17)C12—C11—H11A119.7
C7—N1—Zn1122.18 (15)C11—C12—C13120.6 (2)
C1—N1—Zn1131.21 (13)C11—C12—H12A119.7
C7—N2—C6108.47 (18)C13—C12—H12A119.7
C7—N2—H1N1124 (2)C12—C13—C8119.72 (19)
C6—N2—H1N1127 (2)C12—C13—N3121.3 (2)
C14—N3—C13119.79 (18)C8—C13—N3118.95 (19)
C14—N3—Zn1120.98 (14)N3—C14—C15126.9 (2)
C13—N3—Zn1119.23 (14)N3—C14—H14A116.6
C2—C1—C6121.4 (2)C15—C14—H14A116.6
C2—C1—N1129.8 (2)C16—C15—C20119.0 (2)
C6—C1—N1108.80 (18)C16—C15—C14116.5 (2)
C3—C2—C1116.9 (2)C20—C15—C14124.3 (2)
C3—C2—H2A121.6C17—C16—C15122.2 (2)
C1—C2—H2A121.6C17—C16—H16A118.9
C2—C3—C4121.4 (2)C15—C16—H16A118.9
C2—C3—H3A119.3C16—C17—C18119.9 (2)
C4—C3—H3A119.3C16—C17—H17A120.0
C5—C4—C3121.8 (2)C18—C17—H17A120.0
C5—C4—H4A119.1C19—C18—C17118.8 (2)
C3—C4—H4A119.1C19—C18—C21120.3 (2)
C4—C5—C6116.5 (2)C17—C18—C21120.9 (2)
C4—C5—H5A121.7C18—C19—C20123.6 (2)
C6—C5—H5A121.7C18—C19—H19A118.2
C5—C6—N2132.6 (2)C20—C19—H19A118.2
C5—C6—C1122.0 (2)O1—C20—C19118.2 (2)
N2—C6—C1105.41 (19)O1—C20—C15125.38 (19)
N1—C7—N2111.11 (19)C19—C20—C15116.4 (2)
N1—C7—C8126.48 (19)C18—C21—H21A109.5
N2—C7—C8122.33 (18)C18—C21—H21B109.5
C9—C8—C13117.9 (2)H21A—C21—H21B109.5
C9—C8—C7118.8 (2)C18—C21—H21C109.5
C13—C8—C7123.31 (18)H21A—C21—H21C109.5
C10—C9—C8121.5 (2)H21B—C21—H21C109.5
N1—Zn1—O1—C20−107.74 (18)N1—C7—C8—C9152.4 (2)
N3—Zn1—O1—C20−14.28 (18)N2—C7—C8—C9−24.0 (3)
Cl1—Zn1—O1—C20112.73 (17)N1—C7—C8—C13−28.3 (3)
O1—Zn1—N1—C7116.26 (16)N2—C7—C8—C13155.4 (2)
N3—Zn1—N1—C720.19 (17)C13—C8—C9—C100.7 (3)
Cl1—Zn1—N1—C7−103.02 (16)C7—C8—C9—C10−179.9 (2)
O1—Zn1—N1—C1−55.4 (2)C8—C9—C10—C110.7 (4)
N3—Zn1—N1—C1−151.41 (18)C9—C10—C11—C12−1.2 (4)
Cl1—Zn1—N1—C185.37 (18)C10—C11—C12—C130.3 (4)
O1—Zn1—N3—C1413.98 (18)C11—C12—C13—C81.1 (4)
N1—Zn1—N3—C14135.10 (18)C11—C12—C13—N3−179.0 (2)
Cl1—Zn1—N3—C14−109.09 (17)C9—C8—C13—C12−1.6 (3)
O1—Zn1—N3—C13−166.00 (15)C7—C8—C13—C12179.0 (2)
N1—Zn1—N3—C13−44.88 (16)C9—C8—C13—N3178.56 (19)
Cl1—Zn1—N3—C1370.93 (16)C7—C8—C13—N3−0.8 (3)
C7—N1—C1—C2179.7 (2)C14—N3—C13—C1240.8 (3)
Zn1—N1—C1—C2−7.7 (3)Zn1—N3—C13—C12−139.24 (19)
C7—N1—C1—C6−0.9 (2)C14—N3—C13—C8−139.4 (2)
Zn1—N1—C1—C6171.74 (15)Zn1—N3—C13—C840.6 (2)
C6—C1—C2—C30.7 (3)C13—N3—C14—C15174.0 (2)
N1—C1—C2—C3−180.0 (2)Zn1—N3—C14—C15−6.0 (3)
C1—C2—C3—C4−1.6 (3)N3—C14—C15—C16177.5 (2)
C2—C3—C4—C51.0 (4)N3—C14—C15—C20−7.2 (4)
C3—C4—C5—C60.7 (4)C20—C15—C16—C17−0.6 (4)
C4—C5—C6—N2179.1 (2)C14—C15—C16—C17175.0 (2)
C4—C5—C6—C1−1.6 (3)C15—C16—C17—C18−1.4 (4)
C7—N2—C6—C5178.7 (2)C16—C17—C18—C190.5 (4)
C7—N2—C6—C1−0.7 (2)C16—C17—C18—C21179.3 (2)
C2—C1—C6—C51.0 (3)C17—C18—C19—C202.6 (4)
N1—C1—C6—C5−178.5 (2)C21—C18—C19—C20−176.2 (2)
C2—C1—C6—N2−179.6 (2)Zn1—O1—C20—C19−174.38 (15)
N1—C1—C6—N21.0 (2)Zn1—O1—C20—C156.2 (3)
C1—N1—C7—N20.4 (2)C18—C19—C20—O1176.0 (2)
Zn1—N1—C7—N2−173.03 (14)C18—C19—C20—C15−4.5 (3)
C1—N1—C7—C8−176.3 (2)C16—C15—C20—O1−177.2 (2)
Zn1—N1—C7—C810.3 (3)C14—C15—C20—O17.6 (4)
C6—N2—C7—N10.2 (2)C16—C15—C20—C193.4 (3)
C6—N2—C7—C8177.05 (19)C14—C15—C20—C19−171.8 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N1···Cl1i0.75 (3)2.53 (3)3.2352 (19)157 (2)
C2—H2A···O1ii0.932.593.425 (3)149
C12—H12A···Cg1iii0.932.963.762 (3)145
C21—H21C···Cg2iv0.962.923.741 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C15–C20 and C8–C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N1⋯Cl1i0.75 (3)2.53 (3)3.2352 (19)157 (2)
C2—H2A⋯O1ii0.932.593.425 (3)149
C12—H12ACg1iii0.932.963.762 (3)145
C21—H21CCg2iv0.962.923.741 (3)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Ching Kheng Quah; Hoong-Kun Fun; Rohana Adnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

6.  4-(5,6-Dihydro-benzimidazo[1,2-c]quinazolin-6-yl)benzene-1,3-diol dimethyl sulfoxide monosolvate.

Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

7.  [2-(1H-Benzimidazol-2-yl-κN)aniline-κN]dichloridozinc.

Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  2-(5,6-Dihydro-benzimidazo[1,2-c]quinazolin-6-yl)-5-meth-oxy-phenol.

Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  1 in total

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