| Literature DB >> 22065469 |
Naser Eltaher Eltayeb, Siang Guan Teoh, Suchada Chantrapromma, Hoong-Kun Fun.
Abstract
In the title mononuclear complex, [Zn(C(21)H(16)N(3)O)Cl], the Zn(II) ion is coordinated in a distorted tetra-hedral geometry by two benzimidazole N atoms and one phenolate O atom from the tridentate Schiff base ligand and a chloride ligand. The benzimidazole ring system forms dihedral angles of 26.68 (9) and 56.16 (9)° with the adjacent benzene ring and the methyl-phenolate group benzene ring, respectively. In the crystal, mol-ecules are linked by N-H⋯Cl hydrogen bonds into chains along [100]. Furthermore, weak C-H⋯O and C-H⋯π inter-actions, in addition to π-π inter-actions with centroid-centroid distances in the range 3.5826 (13)-3.9681 (13) Å, are also observed.Entities:
Year: 2011 PMID: 22065469 PMCID: PMC3200787 DOI: 10.1107/S1600536811030170
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C21H16N3O)Cl] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5678 reflections |
| θ = 2.1–30.7° | |
| µ = 1.51 mm−1 | |
| β = 99.675 (1)° | Block, yellow |
| 0.26 × 0.18 × 0.09 mm | |
| Bruker APEXII CCD area-detector diffractometer | 5678 independent reflections |
| Radiation source: sealed tube | 3773 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.7°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 22729 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5678 reflections | (Δ/σ)max = 0.001 |
| 249 parameters | Δρmax = 0.64 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Zn1 | 0.66403 (3) | 0.062335 (13) | 0.71581 (2) | 0.03608 (9) | |
| Cl1 | 0.50460 (7) | 0.00213 (4) | 0.81468 (7) | 0.05647 (19) | |
| O1 | 0.56252 (18) | 0.11090 (8) | 0.57283 (14) | 0.0414 (4) | |
| N1 | 0.86821 (19) | 0.01439 (9) | 0.71573 (16) | 0.0330 (4) | |
| N2 | 1.1246 (2) | −0.00194 (10) | 0.76330 (18) | 0.0375 (4) | |
| N3 | 0.7792 (2) | 0.14557 (9) | 0.79697 (16) | 0.0349 (4) | |
| C1 | 0.9123 (2) | −0.03570 (11) | 0.63665 (19) | 0.0336 (5) | |
| C2 | 0.8211 (3) | −0.07198 (12) | 0.5421 (2) | 0.0413 (5) | |
| H2A | 0.7133 | −0.0651 | 0.5221 | 0.050* | |
| C3 | 0.8977 (3) | −0.11859 (13) | 0.4794 (2) | 0.0504 (6) | |
| H3A | 0.8401 | −0.1447 | 0.4167 | 0.060* | |
| C4 | 1.0616 (3) | −0.12755 (13) | 0.5080 (2) | 0.0496 (6) | |
| H4A | 1.1098 | −0.1590 | 0.4628 | 0.060* | |
| C5 | 1.1522 (3) | −0.09105 (12) | 0.6007 (2) | 0.0445 (6) | |
| H5A | 1.2606 | −0.0967 | 0.6190 | 0.053* | |
| C6 | 1.0740 (3) | −0.04558 (11) | 0.6655 (2) | 0.0358 (5) | |
| C7 | 0.9989 (2) | 0.03287 (11) | 0.79017 (19) | 0.0318 (5) | |
| C8 | 1.0111 (2) | 0.08132 (11) | 0.89379 (19) | 0.0332 (5) | |
| C9 | 1.1357 (3) | 0.07388 (12) | 0.9935 (2) | 0.0388 (5) | |
| H9A | 1.2078 | 0.0386 | 0.9919 | 0.047* | |
| C10 | 1.1532 (3) | 0.11775 (13) | 1.0936 (2) | 0.0456 (6) | |
| H10A | 1.2370 | 0.1123 | 1.1582 | 0.055* | |
| C11 | 1.0461 (3) | 0.16957 (14) | 1.0971 (2) | 0.0520 (7) | |
| H11A | 1.0567 | 0.1986 | 1.1653 | 0.062* | |
| C12 | 0.9230 (3) | 0.17893 (13) | 1.0006 (2) | 0.0451 (6) | |
| H12A | 0.8517 | 0.2144 | 1.0042 | 0.054* | |
| C13 | 0.9045 (2) | 0.13597 (11) | 0.89831 (19) | 0.0351 (5) | |
| C14 | 0.7407 (2) | 0.20702 (12) | 0.7581 (2) | 0.0374 (5) | |
| H14A | 0.7912 | 0.2430 | 0.8042 | 0.045* | |
| C15 | 0.6287 (2) | 0.22529 (11) | 0.6517 (2) | 0.0362 (5) | |
| C16 | 0.6017 (3) | 0.29611 (12) | 0.6307 (2) | 0.0438 (6) | |
| H16A | 0.6503 | 0.3273 | 0.6890 | 0.053* | |
| C17 | 0.5065 (3) | 0.32035 (13) | 0.5274 (2) | 0.0470 (6) | |
| H17A | 0.4893 | 0.3673 | 0.5172 | 0.056* | |
| C18 | 0.4349 (3) | 0.27452 (12) | 0.4370 (2) | 0.0411 (5) | |
| C19 | 0.4615 (3) | 0.20532 (12) | 0.4549 (2) | 0.0408 (5) | |
| H19A | 0.4170 | 0.1753 | 0.3928 | 0.049* | |
| C20 | 0.5529 (2) | 0.17729 (12) | 0.5628 (2) | 0.0365 (5) | |
| C21 | 0.3284 (3) | 0.29989 (14) | 0.3235 (2) | 0.0541 (7) | |
| H21A | 0.3299 | 0.2681 | 0.2569 | 0.081* | |
| H21B | 0.3640 | 0.3440 | 0.3006 | 0.081* | |
| H21C | 0.2232 | 0.3038 | 0.3405 | 0.081* | |
| H1N1 | 1.208 (3) | 0.0047 (13) | 0.793 (2) | 0.051 (8)* |
| Zn1 | 0.02462 (12) | 0.03720 (15) | 0.04474 (16) | 0.00021 (11) | 0.00096 (10) | 0.00267 (12) |
| Cl1 | 0.0295 (3) | 0.0641 (4) | 0.0770 (5) | −0.0005 (3) | 0.0123 (3) | 0.0210 (4) |
| O1 | 0.0393 (8) | 0.0357 (9) | 0.0447 (9) | −0.0003 (7) | −0.0063 (7) | 0.0032 (7) |
| N1 | 0.0269 (8) | 0.0347 (10) | 0.0367 (9) | −0.0008 (7) | 0.0029 (7) | 0.0039 (8) |
| N2 | 0.0252 (9) | 0.0420 (11) | 0.0433 (11) | 0.0027 (9) | 0.0000 (8) | 0.0006 (9) |
| N3 | 0.0280 (8) | 0.0382 (10) | 0.0372 (10) | 0.0010 (8) | 0.0018 (7) | −0.0020 (8) |
| C1 | 0.0344 (11) | 0.0308 (11) | 0.0357 (11) | 0.0002 (9) | 0.0062 (9) | 0.0037 (9) |
| C2 | 0.0374 (12) | 0.0410 (14) | 0.0442 (13) | −0.0029 (10) | 0.0030 (10) | 0.0003 (11) |
| C3 | 0.0646 (17) | 0.0414 (14) | 0.0440 (14) | −0.0089 (13) | 0.0054 (12) | −0.0046 (12) |
| C4 | 0.0651 (17) | 0.0369 (14) | 0.0507 (15) | 0.0040 (12) | 0.0211 (13) | −0.0006 (11) |
| C5 | 0.0437 (13) | 0.0407 (13) | 0.0505 (14) | 0.0077 (11) | 0.0118 (11) | 0.0068 (12) |
| C6 | 0.0337 (11) | 0.0356 (12) | 0.0388 (12) | 0.0015 (9) | 0.0079 (9) | 0.0054 (10) |
| C7 | 0.0262 (9) | 0.0350 (11) | 0.0340 (11) | 0.0007 (9) | 0.0043 (8) | 0.0070 (9) |
| C8 | 0.0288 (10) | 0.0352 (12) | 0.0356 (11) | −0.0040 (9) | 0.0055 (8) | 0.0050 (9) |
| C9 | 0.0322 (11) | 0.0425 (13) | 0.0401 (12) | −0.0009 (10) | 0.0014 (9) | 0.0066 (10) |
| C10 | 0.0396 (12) | 0.0573 (16) | 0.0365 (12) | −0.0095 (12) | −0.0038 (10) | 0.0043 (11) |
| C11 | 0.0538 (15) | 0.0623 (17) | 0.0377 (13) | −0.0100 (14) | 0.0017 (11) | −0.0110 (12) |
| C12 | 0.0430 (13) | 0.0491 (15) | 0.0429 (13) | 0.0009 (11) | 0.0061 (10) | −0.0089 (11) |
| C13 | 0.0281 (10) | 0.0392 (12) | 0.0367 (11) | −0.0046 (9) | 0.0021 (8) | 0.0006 (10) |
| C14 | 0.0331 (11) | 0.0389 (13) | 0.0400 (12) | 0.0001 (10) | 0.0060 (9) | −0.0046 (10) |
| C15 | 0.0327 (11) | 0.0366 (12) | 0.0398 (12) | 0.0038 (9) | 0.0075 (9) | 0.0011 (10) |
| C16 | 0.0417 (13) | 0.0394 (13) | 0.0497 (14) | 0.0029 (11) | 0.0056 (11) | −0.0042 (11) |
| C17 | 0.0442 (13) | 0.0387 (14) | 0.0581 (15) | 0.0063 (11) | 0.0084 (12) | 0.0055 (12) |
| C18 | 0.0344 (11) | 0.0458 (14) | 0.0440 (13) | 0.0070 (10) | 0.0089 (10) | 0.0078 (11) |
| C19 | 0.0370 (12) | 0.0460 (14) | 0.0385 (12) | −0.0024 (10) | 0.0036 (9) | −0.0001 (10) |
| C20 | 0.0272 (10) | 0.0426 (13) | 0.0402 (12) | 0.0003 (9) | 0.0070 (9) | −0.0010 (10) |
| C21 | 0.0474 (14) | 0.0585 (17) | 0.0544 (15) | 0.0114 (13) | 0.0022 (12) | 0.0111 (13) |
| Zn1—O1 | 1.9137 (15) | C8—C13 | 1.415 (3) |
| Zn1—N1 | 1.9954 (17) | C9—C10 | 1.380 (3) |
| Zn1—N3 | 2.0292 (18) | C9—H9A | 0.9300 |
| Zn1—Cl1 | 2.2249 (7) | C10—C11 | 1.375 (3) |
| O1—C20 | 1.300 (3) | C10—H10A | 0.9300 |
| N1—C7 | 1.327 (2) | C11—C12 | 1.380 (3) |
| N1—C1 | 1.401 (3) | C11—H11A | 0.9300 |
| N2—C7 | 1.354 (3) | C12—C13 | 1.388 (3) |
| N2—C6 | 1.381 (3) | C12—H12A | 0.9300 |
| N2—H1N1 | 0.75 (3) | C14—C15 | 1.430 (3) |
| N3—C14 | 1.296 (3) | C14—H14A | 0.9300 |
| N3—C13 | 1.427 (2) | C15—C16 | 1.413 (3) |
| C1—C2 | 1.386 (3) | C15—C20 | 1.428 (3) |
| C1—C6 | 1.392 (3) | C16—C17 | 1.367 (3) |
| C2—C3 | 1.375 (3) | C16—H16A | 0.9300 |
| C2—H2A | 0.9300 | C17—C18 | 1.399 (3) |
| C3—C4 | 1.408 (4) | C17—H17A | 0.9300 |
| C3—H3A | 0.9300 | C18—C19 | 1.377 (3) |
| C4—C5 | 1.373 (3) | C18—C21 | 1.501 (3) |
| C4—H4A | 0.9300 | C19—C20 | 1.417 (3) |
| C5—C6 | 1.381 (3) | C19—H19A | 0.9300 |
| C5—H5A | 0.9300 | C21—H21A | 0.9600 |
| C7—C8 | 1.468 (3) | C21—H21B | 0.9600 |
| C8—C9 | 1.406 (3) | C21—H21C | 0.9600 |
| O1—Zn1—N1 | 120.95 (7) | C10—C9—H9A | 119.3 |
| O1—Zn1—N3 | 95.00 (7) | C8—C9—H9A | 119.3 |
| N1—Zn1—N3 | 90.39 (7) | C11—C10—C9 | 119.6 (2) |
| O1—Zn1—Cl1 | 115.14 (5) | C11—C10—H10A | 120.2 |
| N1—Zn1—Cl1 | 111.84 (5) | C9—C10—H10A | 120.2 |
| N3—Zn1—Cl1 | 120.39 (6) | C10—C11—C12 | 120.7 (2) |
| C20—O1—Zn1 | 125.15 (14) | C10—C11—H11A | 119.7 |
| C7—N1—C1 | 106.20 (17) | C12—C11—H11A | 119.7 |
| C7—N1—Zn1 | 122.18 (15) | C11—C12—C13 | 120.6 (2) |
| C1—N1—Zn1 | 131.21 (13) | C11—C12—H12A | 119.7 |
| C7—N2—C6 | 108.47 (18) | C13—C12—H12A | 119.7 |
| C7—N2—H1N1 | 124 (2) | C12—C13—C8 | 119.72 (19) |
| C6—N2—H1N1 | 127 (2) | C12—C13—N3 | 121.3 (2) |
| C14—N3—C13 | 119.79 (18) | C8—C13—N3 | 118.95 (19) |
| C14—N3—Zn1 | 120.98 (14) | N3—C14—C15 | 126.9 (2) |
| C13—N3—Zn1 | 119.23 (14) | N3—C14—H14A | 116.6 |
| C2—C1—C6 | 121.4 (2) | C15—C14—H14A | 116.6 |
| C2—C1—N1 | 129.8 (2) | C16—C15—C20 | 119.0 (2) |
| C6—C1—N1 | 108.80 (18) | C16—C15—C14 | 116.5 (2) |
| C3—C2—C1 | 116.9 (2) | C20—C15—C14 | 124.3 (2) |
| C3—C2—H2A | 121.6 | C17—C16—C15 | 122.2 (2) |
| C1—C2—H2A | 121.6 | C17—C16—H16A | 118.9 |
| C2—C3—C4 | 121.4 (2) | C15—C16—H16A | 118.9 |
| C2—C3—H3A | 119.3 | C16—C17—C18 | 119.9 (2) |
| C4—C3—H3A | 119.3 | C16—C17—H17A | 120.0 |
| C5—C4—C3 | 121.8 (2) | C18—C17—H17A | 120.0 |
| C5—C4—H4A | 119.1 | C19—C18—C17 | 118.8 (2) |
| C3—C4—H4A | 119.1 | C19—C18—C21 | 120.3 (2) |
| C4—C5—C6 | 116.5 (2) | C17—C18—C21 | 120.9 (2) |
| C4—C5—H5A | 121.7 | C18—C19—C20 | 123.6 (2) |
| C6—C5—H5A | 121.7 | C18—C19—H19A | 118.2 |
| C5—C6—N2 | 132.6 (2) | C20—C19—H19A | 118.2 |
| C5—C6—C1 | 122.0 (2) | O1—C20—C19 | 118.2 (2) |
| N2—C6—C1 | 105.41 (19) | O1—C20—C15 | 125.38 (19) |
| N1—C7—N2 | 111.11 (19) | C19—C20—C15 | 116.4 (2) |
| N1—C7—C8 | 126.48 (19) | C18—C21—H21A | 109.5 |
| N2—C7—C8 | 122.33 (18) | C18—C21—H21B | 109.5 |
| C9—C8—C13 | 117.9 (2) | H21A—C21—H21B | 109.5 |
| C9—C8—C7 | 118.8 (2) | C18—C21—H21C | 109.5 |
| C13—C8—C7 | 123.31 (18) | H21A—C21—H21C | 109.5 |
| C10—C9—C8 | 121.5 (2) | H21B—C21—H21C | 109.5 |
| N1—Zn1—O1—C20 | −107.74 (18) | N1—C7—C8—C9 | 152.4 (2) |
| N3—Zn1—O1—C20 | −14.28 (18) | N2—C7—C8—C9 | −24.0 (3) |
| Cl1—Zn1—O1—C20 | 112.73 (17) | N1—C7—C8—C13 | −28.3 (3) |
| O1—Zn1—N1—C7 | 116.26 (16) | N2—C7—C8—C13 | 155.4 (2) |
| N3—Zn1—N1—C7 | 20.19 (17) | C13—C8—C9—C10 | 0.7 (3) |
| Cl1—Zn1—N1—C7 | −103.02 (16) | C7—C8—C9—C10 | −179.9 (2) |
| O1—Zn1—N1—C1 | −55.4 (2) | C8—C9—C10—C11 | 0.7 (4) |
| N3—Zn1—N1—C1 | −151.41 (18) | C9—C10—C11—C12 | −1.2 (4) |
| Cl1—Zn1—N1—C1 | 85.37 (18) | C10—C11—C12—C13 | 0.3 (4) |
| O1—Zn1—N3—C14 | 13.98 (18) | C11—C12—C13—C8 | 1.1 (4) |
| N1—Zn1—N3—C14 | 135.10 (18) | C11—C12—C13—N3 | −179.0 (2) |
| Cl1—Zn1—N3—C14 | −109.09 (17) | C9—C8—C13—C12 | −1.6 (3) |
| O1—Zn1—N3—C13 | −166.00 (15) | C7—C8—C13—C12 | 179.0 (2) |
| N1—Zn1—N3—C13 | −44.88 (16) | C9—C8—C13—N3 | 178.56 (19) |
| Cl1—Zn1—N3—C13 | 70.93 (16) | C7—C8—C13—N3 | −0.8 (3) |
| C7—N1—C1—C2 | 179.7 (2) | C14—N3—C13—C12 | 40.8 (3) |
| Zn1—N1—C1—C2 | −7.7 (3) | Zn1—N3—C13—C12 | −139.24 (19) |
| C7—N1—C1—C6 | −0.9 (2) | C14—N3—C13—C8 | −139.4 (2) |
| Zn1—N1—C1—C6 | 171.74 (15) | Zn1—N3—C13—C8 | 40.6 (2) |
| C6—C1—C2—C3 | 0.7 (3) | C13—N3—C14—C15 | 174.0 (2) |
| N1—C1—C2—C3 | −180.0 (2) | Zn1—N3—C14—C15 | −6.0 (3) |
| C1—C2—C3—C4 | −1.6 (3) | N3—C14—C15—C16 | 177.5 (2) |
| C2—C3—C4—C5 | 1.0 (4) | N3—C14—C15—C20 | −7.2 (4) |
| C3—C4—C5—C6 | 0.7 (4) | C20—C15—C16—C17 | −0.6 (4) |
| C4—C5—C6—N2 | 179.1 (2) | C14—C15—C16—C17 | 175.0 (2) |
| C4—C5—C6—C1 | −1.6 (3) | C15—C16—C17—C18 | −1.4 (4) |
| C7—N2—C6—C5 | 178.7 (2) | C16—C17—C18—C19 | 0.5 (4) |
| C7—N2—C6—C1 | −0.7 (2) | C16—C17—C18—C21 | 179.3 (2) |
| C2—C1—C6—C5 | 1.0 (3) | C17—C18—C19—C20 | 2.6 (4) |
| N1—C1—C6—C5 | −178.5 (2) | C21—C18—C19—C20 | −176.2 (2) |
| C2—C1—C6—N2 | −179.6 (2) | Zn1—O1—C20—C19 | −174.38 (15) |
| N1—C1—C6—N2 | 1.0 (2) | Zn1—O1—C20—C15 | 6.2 (3) |
| C1—N1—C7—N2 | 0.4 (2) | C18—C19—C20—O1 | 176.0 (2) |
| Zn1—N1—C7—N2 | −173.03 (14) | C18—C19—C20—C15 | −4.5 (3) |
| C1—N1—C7—C8 | −176.3 (2) | C16—C15—C20—O1 | −177.2 (2) |
| Zn1—N1—C7—C8 | 10.3 (3) | C14—C15—C20—O1 | 7.6 (4) |
| C6—N2—C7—N1 | 0.2 (2) | C16—C15—C20—C19 | 3.4 (3) |
| C6—N2—C7—C8 | 177.05 (19) | C14—C15—C20—C19 | −171.8 (2) |
| H··· | ||||
| N2—H1N1···Cl1i | 0.75 (3) | 2.53 (3) | 3.2352 (19) | 157 (2) |
| C2—H2A···O1ii | 0.93 | 2.59 | 3.425 (3) | 149 |
| C12—H12A···Cg1iii | 0.93 | 2.96 | 3.762 (3) | 145 |
| C21—H21C···Cg2iv | 0.96 | 2.92 | 3.741 (3) | 144 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C15–C20 and C8–C13 rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1N1⋯Cl1i | 0.75 (3) | 2.53 (3) | 3.2352 (19) | 157 (2) |
| C2—H2 | 0.93 | 2.59 | 3.425 (3) | 149 |
| C12—H12 | 0.93 | 2.96 | 3.762 (3) | 145 |
| C21—H21 | 0.96 | 2.92 | 3.741 (3) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .