Literature DB >> 22590214

Hydrogen bonding in 1-carb-oxy-propanaminium nitrate.

Amel Messai, Rim Benali-Cherif, Erwann Jeanneau, Nourredine Benali-Cherif.   

Abstract

There are two crystallographically independent cations and two anions in the asymmetric unit of the title compound, C(4)H(5)NO(2) (+)·NO(3) (-). In the crystal, the 1-carb-oxy-propanaminium cations and nitrate anions are linked to each other through strong N-H⋯O and O-H⋯O hydrogen bonds, forming a three-dimensional complex network. C-H⋯O inter-actions also occur.

Entities:  

Year:  2012        PMID: 22590214      PMCID: PMC3344452          DOI: 10.1107/S1600536812013682

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to inorganic–organic hybrid materials, see: Benali-Cherif, Allouche et al. (2007 ▶); Benali-Cherif, Kateb et al. (2007 ▶); Messai et al. (2009 ▶); Cherouana et al. (2003 ▶). Changes in illuminated volume were kept to a minimum, and were taken into account (Görbitz, 1999 ▶) by multi-scan inter-frame scaling.

Experimental

Crystal data

C4H10NO2NO3 M = 166.14 Monoclinic, a = 18.274 (2) Å b = 5.6052 (4) Å c = 16.536 (2) Å β = 116.224 (16)° V = 1519.4 (3) Å3 Z = 8 Cu Kα radiation μ = 1.18 mm−1 T = 150 K 0.1 × 0.02 × 0.01 mm

Data collection

Oxford Xcalibur Atlas Gemini ultra diffractometer Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.987, T max = 0.999 14871 measured reflections 2683 independent reflections 2441 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.08 2683 reflections 203 parameters H-atom parameters not refined Δρmax = 0.25 e Å−3 Δρmin = −0.31 e Å−3 Data collection: Gemini User Manual (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO (Oxford Diffraction, 2010 ▶); data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812013682/ru2030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013682/ru2030Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013682/ru2030Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO2+·NO3F(000) = 704
Mr = 166.14Dx = 1.453 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 7884 reflections
a = 18.274 (2) Åθ = 4.8–66.5°
b = 5.6052 (4) ŵ = 1.18 mm1
c = 16.536 (2) ÅT = 150 K
β = 116.224 (16)°Needle, colorless
V = 1519.4 (3) Å30.1 × 0.02 × 0.01 mm
Z = 8
Oxford Xcalibur Atlas Gemini ultra diffractometer2683 independent reflections
Radiation source: fine-focus sealed tube2441 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
Detector resolution: 10.4685 pixels mm-1θmax = 66.6°, θmin = 5.4°
ω scansh = −21→21
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2010)k = −6→6
Tmin = 0.987, Tmax = 0.999l = −19→19
14871 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters not refined
S = 1.08w = 1/[σ2(Fo2) + (0.0631P)2 + 0.5656P] where P = (Fo2 + 2Fc2)/3
2683 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.05317 (6)0.57372 (18)0.29774 (7)0.0216 (3)
O2A0.11711 (7)0.2856 (2)0.39898 (7)0.0261 (3)
H2O0.10420.36680.43190.039*
N1A0.06545 (7)0.3190 (2)0.16452 (8)0.0153 (3)
H1A0.01420.28310.15260.023*
H1B0.07990.23720.12770.023*
H1C0.06930.47460.15630.023*
C1A0.09177 (9)0.3901 (3)0.32014 (10)0.0163 (3)
C2A0.12050 (8)0.2556 (2)0.25965 (9)0.0152 (3)
H20.11660.08380.26800.018*
C3A0.20896 (9)0.3193 (3)0.28412 (11)0.0216 (3)
H3A0.21190.48760.27220.026*
H3B0.24150.29390.34820.026*
C4A0.24575 (10)0.1760 (3)0.23296 (12)0.0299 (4)
H4A0.30120.22520.25150.045*
H4B0.21480.20300.16940.045*
H4C0.24450.00930.24560.045*
O1B0.45105 (7)0.41637 (18)0.24898 (7)0.0221 (3)
O2B0.37874 (8)0.6976 (2)0.27877 (8)0.0294 (3)
H40.39420.62670.32690.044*
N1B0.43613 (7)0.6551 (2)0.09954 (8)0.0154 (3)
H3C0.48590.70120.13860.023*
H3D0.42150.73260.04770.023*
H3E0.43620.49880.09000.023*
C1B0.40800 (9)0.5918 (3)0.22859 (10)0.0173 (3)
C2B0.37732 (9)0.7096 (2)0.13665 (9)0.0163 (3)
H60.37470.88270.14340.020*
C3B0.29190 (9)0.6152 (3)0.07476 (10)0.0243 (4)
H7A0.29460.44310.07040.029*
H7B0.25570.65030.10190.029*
C4B0.25584 (10)0.7202 (4)−0.01973 (11)0.0341 (4)
H8A0.20260.6538−0.05480.051*
H8B0.29060.6829−0.04780.051*
H8C0.25160.8902−0.01630.051*
O4B0.08435 (8)0.80167 (19)0.13033 (7)0.0262 (3)
O3B0.08960 (7)1.04237 (18)0.03095 (7)0.0226 (3)
N2A0.08566 (7)0.8294 (2)0.05545 (8)0.0170 (3)
O3A0.41482 (8)0.32834 (19)0.54878 (8)0.0275 (3)
O4A0.41008 (7)0.56070 (17)0.44238 (7)0.0212 (3)
O5A0.41568 (7)0.17533 (18)0.42863 (8)0.0246 (3)
N2B0.41346 (7)0.3502 (2)0.47249 (8)0.0173 (3)
O5B0.08332 (7)0.65860 (18)0.00782 (8)0.0248 (3)
U11U22U33U12U13U23
O1A0.0271 (6)0.0212 (6)0.0200 (6)0.0077 (4)0.0136 (5)0.0009 (4)
O2A0.0408 (7)0.0267 (6)0.0164 (6)0.0118 (5)0.0178 (5)0.0036 (4)
N1A0.0201 (6)0.0136 (6)0.0140 (6)−0.0013 (4)0.0092 (5)−0.0015 (4)
C1A0.0190 (7)0.0164 (7)0.0154 (7)−0.0021 (5)0.0093 (6)−0.0007 (5)
C2A0.0193 (7)0.0140 (6)0.0134 (7)0.0017 (5)0.0082 (6)0.0002 (5)
C3A0.0195 (8)0.0246 (8)0.0201 (8)0.0000 (6)0.0083 (6)−0.0039 (6)
C4A0.0227 (8)0.0391 (10)0.0325 (9)−0.0003 (7)0.0163 (7)−0.0078 (7)
O1B0.0280 (6)0.0220 (6)0.0182 (5)0.0087 (4)0.0119 (5)0.0064 (4)
O2B0.0450 (7)0.0321 (6)0.0190 (6)0.0178 (5)0.0213 (6)0.0091 (5)
N1B0.0197 (6)0.0141 (6)0.0141 (6)−0.0016 (4)0.0091 (5)0.0000 (4)
C1B0.0215 (7)0.0164 (7)0.0156 (7)−0.0004 (5)0.0096 (6)−0.0005 (5)
C2B0.0210 (7)0.0157 (7)0.0153 (7)0.0030 (5)0.0110 (6)0.0021 (5)
C3B0.0191 (8)0.0329 (8)0.0212 (8)0.0008 (6)0.0092 (7)0.0065 (6)
C4B0.0230 (9)0.0497 (11)0.0232 (9)−0.0038 (8)0.0043 (7)0.0112 (8)
O4B0.0474 (7)0.0192 (5)0.0168 (6)−0.0034 (5)0.0184 (5)0.0011 (4)
O3B0.0373 (6)0.0165 (5)0.0196 (6)−0.0017 (4)0.0176 (5)0.0019 (4)
N2A0.0198 (6)0.0173 (6)0.0143 (6)−0.0006 (5)0.0079 (5)−0.0013 (5)
O3A0.0522 (8)0.0186 (5)0.0228 (6)0.0024 (5)0.0268 (6)0.0028 (4)
O4A0.0334 (6)0.0158 (5)0.0176 (5)0.0026 (4)0.0140 (5)0.0034 (4)
O5A0.0320 (6)0.0208 (5)0.0242 (6)−0.0005 (4)0.0153 (5)−0.0083 (4)
N2B0.0199 (6)0.0172 (6)0.0168 (6)0.0005 (5)0.0099 (5)−0.0002 (5)
O5B0.0321 (6)0.0208 (6)0.0235 (6)0.0007 (4)0.0141 (5)−0.0079 (4)
O1A—C1A1.2098 (18)N1B—C2B1.4859 (17)
O2A—C1A1.3127 (18)N1B—H3C0.8900
O2A—H2O0.8200N1B—H3D0.8900
N1A—C2A1.4880 (18)N1B—H3E0.8900
N1A—H1A0.8900C1B—C2B1.520 (2)
N1A—H1B0.8900C2B—C3B1.534 (2)
N1A—H1C0.8900C2B—H60.9800
C1A—C2A1.5193 (19)C3B—C4B1.521 (2)
C2A—C3A1.525 (2)C3B—H7A0.9700
C2A—H20.9800C3B—H7B0.9700
C3A—C4A1.522 (2)C4B—H8A0.9600
C3A—H3A0.9700C4B—H8B0.9600
C3A—H3B0.9700C4B—H8C0.9600
C4A—H4A0.9600O4B—N2A1.2586 (16)
C4A—H4B0.9600O3B—N2A1.2727 (16)
C4A—H4C0.9600N2A—O5B1.2285 (16)
O1B—C1B1.2103 (18)O3A—N2B1.2568 (16)
O2B—C1B1.3108 (18)O4A—N2B1.2714 (16)
O2B—H40.8200O5A—N2B1.2307 (16)
C1A—O2A—H2O109.5H3C—N1B—H3D109.5
C2A—N1A—H1A109.5C2B—N1B—H3E109.5
C2A—N1A—H1B109.5H3C—N1B—H3E109.5
H1A—N1A—H1B109.5H3D—N1B—H3E109.5
C2A—N1A—H1C109.5O1B—C1B—O2B126.01 (13)
H1A—N1A—H1C109.5O1B—C1B—C2B122.62 (13)
H1B—N1A—H1C109.5O2B—C1B—C2B111.30 (12)
O1A—C1A—O2A125.85 (13)N1B—C2B—C1B108.01 (11)
O1A—C1A—C2A123.02 (13)N1B—C2B—C3B111.22 (12)
O2A—C1A—C2A111.08 (12)C1B—C2B—C3B109.52 (12)
N1A—C2A—C1A107.98 (11)N1B—C2B—H6109.4
N1A—C2A—C3A111.51 (11)C1B—C2B—H6109.4
C1A—C2A—C3A110.08 (12)C3B—C2B—H6109.4
N1A—C2A—H2109.1C4B—C3B—C2B113.77 (13)
C1A—C2A—H2109.1C4B—C3B—H7A108.8
C3A—C2A—H2109.1C2B—C3B—H7A108.8
C4A—C3A—C2A113.94 (13)C4B—C3B—H7B108.8
C4A—C3A—H3A108.8C2B—C3B—H7B108.8
C2A—C3A—H3A108.8H7A—C3B—H7B107.7
C4A—C3A—H3B108.8C3B—C4B—H8A109.5
C2A—C3A—H3B108.8C3B—C4B—H8B109.5
H3A—C3A—H3B107.7H8A—C4B—H8B109.5
C3A—C4A—H4A109.5C3B—C4B—H8C109.5
C3A—C4A—H4B109.5H8A—C4B—H8C109.5
H4A—C4A—H4B109.5H8B—C4B—H8C109.5
C3A—C4A—H4C109.5O5B—N2A—O4B121.59 (12)
H4A—C4A—H4C109.5O5B—N2A—O3B121.18 (11)
H4B—C4A—H4C109.5O4B—N2A—O3B117.22 (11)
C1B—O2B—H4109.5O5A—N2B—O3A121.51 (12)
C2B—N1B—H3C109.5O5A—N2B—O4A121.13 (12)
C2B—N1B—H3D109.5O3A—N2B—O4A117.36 (11)
O1A—C1A—C2A—N1A−24.57 (18)O1B—C1B—C2B—N1B−26.22 (19)
O2A—C1A—C2A—N1A157.91 (12)O2B—C1B—C2B—N1B156.73 (12)
O1A—C1A—C2A—C3A97.38 (16)O1B—C1B—C2B—C3B95.05 (16)
O2A—C1A—C2A—C3A−80.14 (15)O2B—C1B—C2B—C3B−82.00 (15)
N1A—C2A—C3A—C4A−65.55 (16)N1B—C2B—C3B—C4B−60.01 (17)
C1A—C2A—C3A—C4A174.63 (13)C1B—C2B—C3B—C4B−179.33 (13)
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1Ai0.892.112.8590 (18)141
N1A—H1A···O5Bii0.892.482.9464 (18)113
N1A—H1B···O3Biii0.892.012.8877 (17)169
N1A—H1B···O4Biii0.892.443.0033 (16)121
N1A—H1C···O4B0.891.932.8162 (16)173
O2A—H2O···O3Biv0.821.842.6295 (17)160
N1B—H3C···O1Bv0.892.082.8470 (16)143
N1B—H3C···O5Av0.892.502.946 (2)111
N1B—H3D···O3Avi0.892.472.9917 (16)118
N1B—H3D···O4Avi0.892.022.9025 (16)169
N1B—H3E···O3Avii0.891.942.8126 (16)168
O2B—H4···O4A0.821.842.6206 (16)159
C4A—H4B···O3Biii0.962.583.382 (2)141
C2B—H6···O3Avi0.982.573.189 (2)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1A⋯O1Ai0.892.112.8590 (18)141
N1A—H1A⋯O5Bii0.892.482.9464 (18)113
N1A—H1B⋯O3Biii0.892.012.8877 (17)169
N1A—H1B⋯O4Biii0.892.443.0033 (16)121
N1A—H1C⋯O4B0.891.932.8162 (16)173
O2A—H2O⋯O3Biv0.821.842.6295 (17)160
N1B—H3C⋯O1Bv0.892.082.8470 (16)143
N1B—H3C⋯O5Av0.892.502.946 (2)111
N1B—H3D⋯O3Avi0.892.472.9917 (16)118
N1B—H3D⋯O4Avi0.892.022.9025 (16)169
N1B—H3E⋯O3Avii0.891.942.8126 (16)168
O2B—H4⋯O4A0.821.842.6206 (16)159
C4A—H4B⋯O3Biii0.962.583.382 (2)141
C2B—H6⋯O3Avi0.982.573.189 (2)121

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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