Literature DB >> 23795031

3-Amino-5,6-dimethyl-1,2,4-triazin-2-ium nitrate.

Souhir Bel Haj Salah1, Mohamed Lahbib Mrad, Valeria Ferretti, Frederic Lefebvre, Cherif Ben Nasr.   

Abstract

In the title compound, C5H9N4 (+)·NO3 (-), the organic cations and the nitrate anions have both crystallographically imposed mirror symmetry and are linked via N-H⋯O hydrogen bonds, forming infinite chains running along the c-axis direction. The values of the N-O bond lengths [1.2256 (19)-1.2642 (18) Å] and O-N-O angles [118.39 (16)-121.64 (15)°] indicate that the nitrate anion exhibits a slightly distorted C3h geometry. The N atom of the NH2 group has sp (2) character.

Entities:  

Year:  2013        PMID: 23795031      PMCID: PMC3684929          DOI: 10.1107/S1600536813012026

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to hybrid materials, see: Benali-Cherif et al. (2007 ▶); Messai et al. (2009 ▶). For studies of amine salts, see: Jayaraman et al. (2002 ▶); Steiner (2002 ▶). For related structures, see: Gilli et al. (1994 ▶); Boenigk & Mootz (1988 ▶); Jin et al. (2001 ▶).

Experimental

Crystal data

C5H9N4NO3 M = 187.17 Orthorhombic, a = 19.7213 (2) Å b = 6.4245 (2) Å c = 6.7197 (6) Å V = 851.38 (8) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.32 × 0.18 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer 2321 measured reflections 1326 independent reflections 1031 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.161 S = 1.04 1326 reflections 102 parameters All H-atom parameters refined Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: KappaCCD Server Software (Nonius, 1997 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813012026/rz5062sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012026/rz5062Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012026/rz5062Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H9N4+·NO3F(000) = 392
Mr = 187.17Dx = 1.460 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 2321 reflections
a = 19.7213 (2) Åθ = 2.0–30.0°
b = 6.4245 (2) ŵ = 0.12 mm1
c = 6.7197 (6) ÅT = 295 K
V = 851.38 (8) Å3Rod, colourless
Z = 40.32 × 0.18 × 0.12 mm
Nonius KappaCCD diffractometer1031 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.014
Graphite monochromatorθmax = 30.0°, θmin = 3.8°
φ scans and ω scansh = −27→27
2321 measured reflectionsk = −8→8
1326 independent reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: difference Fourier map
wR(F2) = 0.161All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.1038P)2 + 0.061P] where P = (Fo2 + 2Fc2)/3
1326 reflections(Δ/σ)max < 0.001
102 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.07155 (6)0.2500−0.1964 (2)0.0634 (4)
O2−0.15520 (7)0.25000.0121 (2)0.0705 (5)
O3−0.17374 (7)0.2500−0.3030 (2)0.0767 (5)
N10.04674 (7)0.25000.4549 (2)0.0477 (4)
N20.08600 (8)0.25000.0580 (2)0.0520 (4)
N30.02034 (7)0.25000.11531 (19)0.0478 (4)
N4−0.06438 (7)0.25000.3511 (2)0.0562 (4)
N5−0.13454 (7)0.2500−0.1615 (2)0.0519 (4)
C10.00063 (7)0.25000.3055 (2)0.0419 (4)
C20.13126 (8)0.25000.1986 (2)0.0479 (4)
C30.11066 (8)0.25000.4046 (2)0.0462 (4)
C40.20428 (9)0.25000.1392 (4)0.0650 (5)
C50.16177 (11)0.25000.5668 (3)0.0695 (6)
H1N−0.1005 (17)0.25000.254 (5)0.100 (9)*
H2N−0.0701 (14)0.25000.479 (5)0.083 (8)*
H3N−0.0130 (17)0.25000.007 (5)0.086 (7)*
H10.2269 (9)0.133 (3)0.203 (3)0.092 (6)*
H20.206 (3)0.25000.019 (9)0.153 (16)*
H30.1438 (16)0.25000.683 (5)0.102 (10)*
H40.1920 (13)0.130 (3)0.544 (4)0.128 (8)*
U11U22U33U12U13U23
O10.0410 (6)0.1020 (10)0.0472 (7)0.0000.0003 (5)0.000
O20.0505 (7)0.1173 (12)0.0438 (7)0.0000.0051 (6)0.000
O30.0532 (8)0.1263 (14)0.0506 (8)0.000−0.0160 (6)0.000
N10.0417 (7)0.0647 (8)0.0366 (6)0.000−0.0006 (5)0.000
N20.0452 (7)0.0729 (9)0.0379 (7)0.0000.0026 (5)0.000
N30.0419 (7)0.0646 (8)0.0369 (6)0.000−0.0028 (5)0.000
N40.0405 (7)0.0801 (10)0.0480 (8)0.0000.0019 (6)0.000
N50.0421 (7)0.0695 (9)0.0441 (7)0.000−0.0033 (5)0.000
C10.0400 (7)0.0475 (7)0.0381 (7)0.000−0.0010 (6)0.000
C20.0421 (7)0.0592 (9)0.0424 (8)0.0000.0024 (6)0.000
C30.0412 (7)0.0583 (8)0.0390 (7)0.000−0.0015 (6)0.000
C40.0416 (8)0.0970 (15)0.0564 (11)0.0000.0075 (8)0.000
C50.0474 (9)0.1150 (18)0.0461 (10)0.000−0.0072 (8)0.000
O1—N51.2642 (18)N4—H1N0.97 (3)
O2—N51.236 (2)N4—H2N0.87 (4)
O3—N51.2256 (19)C2—C31.443 (2)
N1—C31.305 (2)C2—C41.494 (2)
N1—C11.3547 (19)C3—C51.485 (2)
N2—C21.300 (2)C4—H10.972 (17)
N2—N31.3510 (19)C4—H20.81 (6)
N3—C11.3357 (19)C5—H30.86 (3)
N3—H3N0.98 (4)C5—H40.99 (2)
N4—C11.3183 (19)
C3—N1—C1117.14 (14)N3—C1—N1120.93 (14)
C2—N2—N3116.81 (14)N2—C2—C3120.27 (15)
C1—N3—N2123.48 (13)N2—C2—C4117.90 (16)
C1—N3—H3N121 (2)C3—C2—C4121.83 (15)
N2—N3—H3N116 (2)N1—C3—C2121.37 (14)
C1—N4—H1N124 (2)N1—C3—C5117.75 (16)
C1—N4—H2N111.0 (18)C2—C3—C5120.88 (15)
H1N—N4—H2N125 (2)C2—C4—H1108.9 (11)
O3—N5—O2121.64 (15)C2—C4—H2108 (4)
O3—N5—O1118.39 (16)H1—C4—H2115 (2)
O2—N5—O1119.97 (15)C3—C5—H3113 (2)
N4—C1—N3120.37 (14)C3—C5—H4107.1 (15)
N4—C1—N1118.70 (15)H3—C5—H4113.1 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O10.98 (4)1.79 (4)2.770 (2)178 (3)
N4—H1N···O20.97 (3)1.93 (3)2.898 (2)166 (3)
N4—H2N···O1i0.87 (4)2.18 (4)3.043 (2)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3N⋯O10.98 (4)1.79 (4)2.770 (2)178 (3)
N4—H1N⋯O20.97 (3)1.93 (3)2.898 (2)166 (3)
N4—H2N⋯O1i 0.87 (4)2.18 (4)3.043 (2)173 (3)

Symmetry code: (i) .

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