| Literature DB >> 23795031 |
Souhir Bel Haj Salah1, Mohamed Lahbib Mrad, Valeria Ferretti, Frederic Lefebvre, Cherif Ben Nasr.
Abstract
In the title compound, C5H9N4 (+)·NO3 (-), the organic cations and the nitrate anions have both crystallographically imposed mirror symmetry and are linked via N-H⋯O hydrogen bonds, forming infinite chains running along the c-axis direction. The values of the N-O bond lengths [1.2256 (19)-1.2642 (18) Å] and O-N-O angles [118.39 (16)-121.64 (15)°] indicate that the nitrate anion exhibits a slightly distorted C3h geometry. The N atom of the NH2 group has sp (2) character.Entities:
Year: 2013 PMID: 23795031 PMCID: PMC3684929 DOI: 10.1107/S1600536813012026
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H9N4+·NO3− | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2n | Cell parameters from 2321 reflections |
| θ = 2.0–30.0° | |
| µ = 0.12 mm−1 | |
| Rod, colourless | |
| 0.32 × 0.18 × 0.12 mm |
| Nonius KappaCCD diffractometer | 1031 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 30.0°, θmin = 3.8° |
| φ scans and ω scans | |
| 2321 measured reflections | |
| 1326 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| All H-atom parameters refined | |
| 1326 reflections | (Δ/σ)max < 0.001 |
| 102 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.07155 (6) | 0.2500 | −0.1964 (2) | 0.0634 (4) | |
| O2 | −0.15520 (7) | 0.2500 | 0.0121 (2) | 0.0705 (5) | |
| O3 | −0.17374 (7) | 0.2500 | −0.3030 (2) | 0.0767 (5) | |
| N1 | 0.04674 (7) | 0.2500 | 0.4549 (2) | 0.0477 (4) | |
| N2 | 0.08600 (8) | 0.2500 | 0.0580 (2) | 0.0520 (4) | |
| N3 | 0.02034 (7) | 0.2500 | 0.11531 (19) | 0.0478 (4) | |
| N4 | −0.06438 (7) | 0.2500 | 0.3511 (2) | 0.0562 (4) | |
| N5 | −0.13454 (7) | 0.2500 | −0.1615 (2) | 0.0519 (4) | |
| C1 | 0.00063 (7) | 0.2500 | 0.3055 (2) | 0.0419 (4) | |
| C2 | 0.13126 (8) | 0.2500 | 0.1986 (2) | 0.0479 (4) | |
| C3 | 0.11066 (8) | 0.2500 | 0.4046 (2) | 0.0462 (4) | |
| C4 | 0.20428 (9) | 0.2500 | 0.1392 (4) | 0.0650 (5) | |
| C5 | 0.16177 (11) | 0.2500 | 0.5668 (3) | 0.0695 (6) | |
| H1N | −0.1005 (17) | 0.2500 | 0.254 (5) | 0.100 (9)* | |
| H2N | −0.0701 (14) | 0.2500 | 0.479 (5) | 0.083 (8)* | |
| H3N | −0.0130 (17) | 0.2500 | 0.007 (5) | 0.086 (7)* | |
| H1 | 0.2269 (9) | 0.133 (3) | 0.203 (3) | 0.092 (6)* | |
| H2 | 0.206 (3) | 0.2500 | 0.019 (9) | 0.153 (16)* | |
| H3 | 0.1438 (16) | 0.2500 | 0.683 (5) | 0.102 (10)* | |
| H4 | 0.1920 (13) | 0.130 (3) | 0.544 (4) | 0.128 (8)* |
| O1 | 0.0410 (6) | 0.1020 (10) | 0.0472 (7) | 0.000 | 0.0003 (5) | 0.000 |
| O2 | 0.0505 (7) | 0.1173 (12) | 0.0438 (7) | 0.000 | 0.0051 (6) | 0.000 |
| O3 | 0.0532 (8) | 0.1263 (14) | 0.0506 (8) | 0.000 | −0.0160 (6) | 0.000 |
| N1 | 0.0417 (7) | 0.0647 (8) | 0.0366 (6) | 0.000 | −0.0006 (5) | 0.000 |
| N2 | 0.0452 (7) | 0.0729 (9) | 0.0379 (7) | 0.000 | 0.0026 (5) | 0.000 |
| N3 | 0.0419 (7) | 0.0646 (8) | 0.0369 (6) | 0.000 | −0.0028 (5) | 0.000 |
| N4 | 0.0405 (7) | 0.0801 (10) | 0.0480 (8) | 0.000 | 0.0019 (6) | 0.000 |
| N5 | 0.0421 (7) | 0.0695 (9) | 0.0441 (7) | 0.000 | −0.0033 (5) | 0.000 |
| C1 | 0.0400 (7) | 0.0475 (7) | 0.0381 (7) | 0.000 | −0.0010 (6) | 0.000 |
| C2 | 0.0421 (7) | 0.0592 (9) | 0.0424 (8) | 0.000 | 0.0024 (6) | 0.000 |
| C3 | 0.0412 (7) | 0.0583 (8) | 0.0390 (7) | 0.000 | −0.0015 (6) | 0.000 |
| C4 | 0.0416 (8) | 0.0970 (15) | 0.0564 (11) | 0.000 | 0.0075 (8) | 0.000 |
| C5 | 0.0474 (9) | 0.1150 (18) | 0.0461 (10) | 0.000 | −0.0072 (8) | 0.000 |
| O1—N5 | 1.2642 (18) | N4—H1N | 0.97 (3) |
| O2—N5 | 1.236 (2) | N4—H2N | 0.87 (4) |
| O3—N5 | 1.2256 (19) | C2—C3 | 1.443 (2) |
| N1—C3 | 1.305 (2) | C2—C4 | 1.494 (2) |
| N1—C1 | 1.3547 (19) | C3—C5 | 1.485 (2) |
| N2—C2 | 1.300 (2) | C4—H1 | 0.972 (17) |
| N2—N3 | 1.3510 (19) | C4—H2 | 0.81 (6) |
| N3—C1 | 1.3357 (19) | C5—H3 | 0.86 (3) |
| N3—H3N | 0.98 (4) | C5—H4 | 0.99 (2) |
| N4—C1 | 1.3183 (19) | ||
| C3—N1—C1 | 117.14 (14) | N3—C1—N1 | 120.93 (14) |
| C2—N2—N3 | 116.81 (14) | N2—C2—C3 | 120.27 (15) |
| C1—N3—N2 | 123.48 (13) | N2—C2—C4 | 117.90 (16) |
| C1—N3—H3N | 121 (2) | C3—C2—C4 | 121.83 (15) |
| N2—N3—H3N | 116 (2) | N1—C3—C2 | 121.37 (14) |
| C1—N4—H1N | 124 (2) | N1—C3—C5 | 117.75 (16) |
| C1—N4—H2N | 111.0 (18) | C2—C3—C5 | 120.88 (15) |
| H1N—N4—H2N | 125 (2) | C2—C4—H1 | 108.9 (11) |
| O3—N5—O2 | 121.64 (15) | C2—C4—H2 | 108 (4) |
| O3—N5—O1 | 118.39 (16) | H1—C4—H2 | 115 (2) |
| O2—N5—O1 | 119.97 (15) | C3—C5—H3 | 113 (2) |
| N4—C1—N3 | 120.37 (14) | C3—C5—H4 | 107.1 (15) |
| N4—C1—N1 | 118.70 (15) | H3—C5—H4 | 113.1 (17) |
| H··· | ||||
| N3—H3 | 0.98 (4) | 1.79 (4) | 2.770 (2) | 178 (3) |
| N4—H1 | 0.97 (3) | 1.93 (3) | 2.898 (2) | 166 (3) |
| N4—H2 | 0.87 (4) | 2.18 (4) | 3.043 (2) | 173 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.98 (4) | 1.79 (4) | 2.770 (2) | 178 (3) |
| N4—H1 | 0.97 (3) | 1.93 (3) | 2.898 (2) | 166 (3) |
| N4—H2 | 0.87 (4) | 2.18 (4) | 3.043 (2) | 173 (3) |
Symmetry code: (i) .