Literature DB >> 24940215

Di-aqua-bis-(nicotinamide-κN (1))bis-(thiocyanato-κS)cobalt(II).

Deepanjali Pandey1, Shahid S Narvi1, Siddhartha Chaudhuri2.   

Abstract

In the title compound, [Co(NCS)2(C6H6N2O)2(H2O)2], the Co(II) cation is located on an inversion centre and is coordinated by two thio-cyanate anions, two nicotinamide mol-ecules and two water mol-ecules in a distorted N2O2S2 octa-hedral geometry. The amide group is twisted by 31.30 (16)° with respect to the pyridine ring. In the crystal, mol-ecules are linked by O-H⋯O, O-H⋯S and N-H⋯S hydrogen bonds into a three-dimensional supra-molecular network. Weak π-π stacking is observed between parallel pyridine rings of adjacent mol-ecules, the centroid-centroid distance being 3.8270 (19) Å.

Entities:  

Year:  2014        PMID: 24940215      PMCID: PMC4051052          DOI: 10.1107/S1600536814011453

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of transition-metal complexes with biochemically active ligands, see: Antolini et al. (1982 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek et al. (2009a ▶,b ▶); Özbek et al. (2009 ▶).

Experimental

Crystal data

[Co(NCS)2(C6H6N2O)2(H2O)2] M = 455.38 Triclinic, a = 7.5475 (19) Å b = 8.054 (2) Å c = 8.932 (2) Å α = 73.347 (4)° β = 70.067 (4)° γ = 66.559 (4)° V = 461.07 (19) Å3 Z = 1 Mo Kα radiation μ = 1.19 mm−1 T = 100 K 0.35 × 0.33 × 0.31 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.68, T max = 0.71 2450 measured reflections 1626 independent reflections 1469 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.097 S = 1.07 1626 reflections 130 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.39 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814011453/xu5790sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814011453/xu5790Isup2.hkl CCDC reference: 850080 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Co(NCS)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 455.38F(000) = 233
Triclinic, P1Dx = 1.640 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5475 (19) ÅCell parameters from 1626 reflections
b = 8.054 (2) Åθ = 2.5–25.2°
c = 8.932 (2) ŵ = 1.19 mm1
α = 73.347 (4)°T = 100 K
β = 70.067 (4)°Prism, pink
γ = 66.559 (4)°0.35 × 0.33 × 0.31 mm
V = 461.07 (19) Å3
Bruker SMART CCD area-detector diffractometer1626 independent reflections
Radiation source: fine-focus sealed tube1469 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
phi and ω scansθmax = 25.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −9→8
Tmin = 0.68, Tmax = 0.71k = −8→9
2450 measured reflectionsl = −6→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0582P)2 + 0.1481P] where P = (Fo2 + 2Fc2)/3
1626 reflections(Δ/σ)max = 0.001
130 parametersΔρmax = 0.60 e Å3
2 restraintsΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co0.50000.50000.50000.01075 (18)
S11.10774 (10)0.10828 (9)0.64395 (8)0.0188 (2)
N10.7855 (3)0.3745 (3)0.5269 (3)0.0190 (5)
N20.5800 (3)0.3846 (3)0.2911 (3)0.0156 (5)
N30.2309 (3)0.1182 (3)0.2363 (3)0.0183 (5)
H3A0.14080.08390.22800.022*
H3B0.24470.10990.33010.022*
O10.3341 (3)0.1985 (3)−0.0328 (2)0.0219 (4)
O20.5635 (3)0.7330 (3)0.3582 (2)0.0187 (4)
C10.9198 (4)0.2665 (4)0.5745 (3)0.0163 (6)
C20.4546 (4)0.3214 (3)0.2666 (3)0.0156 (5)
H20.33420.32690.34430.019*
C30.4961 (4)0.2479 (4)0.1301 (3)0.0162 (6)
C40.6758 (4)0.2414 (4)0.0138 (3)0.0178 (6)
H40.70670.1965−0.08020.021*
C50.8072 (4)0.3027 (4)0.0404 (3)0.0188 (6)
H50.92960.2971−0.03440.023*
C60.7542 (4)0.3726 (4)0.1800 (3)0.0171 (6)
H60.84380.41320.19730.021*
C70.3480 (4)0.1838 (3)0.1049 (3)0.0156 (6)
H2A0.572 (5)0.748 (4)0.260 (2)0.023*
H2B0.662 (4)0.750 (4)0.363 (4)0.023*
U11U22U33U12U13U23
Co0.0119 (3)0.0132 (3)0.0084 (3)−0.0052 (2)−0.00355 (19)−0.00102 (18)
S10.0173 (4)0.0203 (4)0.0188 (4)−0.0074 (3)−0.0069 (3)0.0011 (3)
N10.0212 (13)0.0203 (12)0.0166 (12)−0.0074 (10)−0.0059 (10)−0.0032 (9)
N20.0170 (12)0.0159 (12)0.0140 (11)−0.0062 (9)−0.0046 (9)−0.0009 (9)
N30.0205 (12)0.0254 (13)0.0140 (11)−0.0128 (10)−0.0051 (9)−0.0025 (9)
O10.0280 (11)0.0270 (11)0.0156 (10)−0.0134 (9)−0.0079 (8)−0.0021 (8)
O20.0217 (10)0.0247 (11)0.0143 (9)−0.0135 (9)−0.0058 (8)−0.0005 (8)
C10.0184 (14)0.0207 (14)0.0120 (13)−0.0101 (12)0.0003 (11)−0.0060 (11)
C20.0159 (13)0.0147 (13)0.0140 (12)−0.0044 (11)−0.0040 (10)−0.0001 (10)
C30.0185 (14)0.0147 (13)0.0141 (13)−0.0053 (11)−0.0052 (11)0.0003 (10)
C40.0215 (14)0.0182 (14)0.0126 (13)−0.0062 (11)−0.0041 (11)−0.0021 (10)
C50.0158 (14)0.0215 (15)0.0163 (13)−0.0065 (11)−0.0019 (11)−0.0016 (11)
C60.0171 (14)0.0175 (14)0.0175 (14)−0.0068 (11)−0.0065 (11)−0.0003 (11)
C70.0179 (14)0.0140 (13)0.0151 (13)−0.0034 (11)−0.0061 (11)−0.0032 (10)
Co—N12.050 (2)O1—C71.237 (3)
Co—N1i2.050 (2)O2—H2A0.838 (18)
Co—N22.119 (2)O2—H2B0.825 (18)
Co—N2i2.119 (2)C2—C31.394 (4)
Co—O22.0724 (18)C2—H20.9300
Co—O2i2.0724 (18)C3—C41.391 (4)
S1—C11.652 (3)C3—C71.505 (4)
N1—C11.160 (4)C4—C51.378 (4)
N2—C61.337 (3)C4—H40.9300
N2—C21.338 (3)C5—C61.384 (4)
N3—C71.321 (3)C5—H50.9300
N3—H3A0.8600C6—H60.9300
N3—H3B0.8600
N1—Co—N1i180.0Co—O2—H2A116 (2)
N1—Co—O291.98 (8)Co—O2—H2B118 (2)
N1i—Co—O288.02 (8)H2A—O2—H2B106 (3)
N1—Co—O2i88.02 (8)N1—C1—S1178.4 (2)
N1i—Co—O2i91.98 (8)N2—C2—C3123.0 (2)
O2—Co—O2i180.000 (1)N2—C2—H2118.5
N1—Co—N291.21 (9)C3—C2—H2118.5
N1i—Co—N288.79 (9)C4—C3—C2118.2 (2)
O2—Co—N290.66 (8)C4—C3—C7120.5 (2)
O2i—Co—N289.34 (8)C2—C3—C7121.3 (2)
N1—Co—N2i88.79 (9)C5—C4—C3118.9 (2)
N1i—Co—N2i91.21 (9)C5—C4—H4120.5
O2—Co—N2i89.34 (8)C3—C4—H4120.5
O2i—Co—N2i90.66 (8)C4—C5—C6119.0 (2)
N2—Co—N2i180.0C4—C5—H5120.5
C1—N1—Co159.3 (2)C6—C5—H5120.5
C6—N2—C2117.8 (2)N2—C6—C5123.0 (2)
C6—N2—Co122.02 (17)N2—C6—H6118.5
C2—N2—Co120.17 (17)C5—C6—H6118.5
C7—N3—H3A120.0O1—C7—N3122.5 (2)
C7—N3—H3B120.0O1—C7—C3120.7 (2)
H3A—N3—H3B120.0N3—C7—C3116.7 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1ii0.83 (2)1.89 (2)2.690 (2)161 (4)
O2—H2B···S1iii0.82 (4)2.41 (3)3.204 (3)163 (3)
N3—H3A···S1iv0.862.663.425 (3)149
N3—H3B···S1v0.862.633.422 (3)153
Table 1

Selected bond lengths (Å)

Co—N12.050 (2)
Co—N22.119 (2)
Co—O22.0724 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2A⋯O1i 0.83 (2)1.89 (2)2.690 (2)161 (4)
O2—H2B⋯S1ii 0.82 (4)2.41 (3)3.204 (3)163 (3)
N3—H3A⋯S1iii 0.862.663.425 (3)149
N3—H3B⋯S1iv 0.862.633.422 (3)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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