Literature DB >> 24860314

Di-aqua-bis-(nicotinamide-κN (1))bis-(thio-cyanato-κN)nickel(II).

Deepanjali Pandey1, Shahid S Narvi1, Gopal K Mehrotra1, Raymond J Butcher2.   

Abstract

In the title complex, [Ni(NCS)2(C6H6N2O)2(H2O)2], the Ni(II) ion is located on an inversion center and is coordinated in a distorted octa-hedral environment by two N atoms from two nicotinamide ligands and two water mol-ecules in the equatorial plane, and two N atoms from two thio-cyanate anions in the axial positions, all acting as monodentate ligands. In the crystal, weak N-H⋯S hydrogen bonds between the amino groups and the thio-cyanate anions form an R 4 (2)(8) motif. The complex mol-ecules are linked by O-H⋯O, O-H⋯S, and N-H⋯S hydrogen bonds into a three-dimensional supra-molecular structure. Weak π-π inter-actions between the pyridine rings is also found [centroid-centroid distance = 3.8578 (14) Å].

Entities:  

Year:  2014        PMID: 24860314      PMCID: PMC4011277          DOI: 10.1107/S1600536814006771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of transition metal complexes with biochemically active ligands, see: Antolini et al. (1982 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek, Dal et al. (2009 ▶); Hökelek, Yilmaz et al. (2009 ▶); Özbek et al. (2009 ▶); Zhu et al. (2006 ▶).

Experimental

Crystal data

[Ni(NCS)2(C6H6N2O)2(H2O)2] M = 455.16 Triclinic, a = 7.5574 (15) Å b = 8.2683 (19) Å c = 9.0056 (15) Å α = 73.010 (18)° β = 69.698 (17)° γ = 66.51 (2)° V = 476.23 (18) Å3 Z = 1 Mo Kα radiation μ = 1.27 mm−1 T = 123 K 0.48 × 0.32 × 0.26 mm

Data collection

Agilent Xcalibur Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.690, T max = 1.000 8114 measured reflections 4752 independent reflections 3477 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.125 S = 1.03 4752 reflections 132 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.71 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814006771/hy2643sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006771/hy2643Isup2.hkl CCDC reference: 993930 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Ni(NCS)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 455.16F(000) = 234
Triclinic, P1Dx = 1.587 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5574 (15) ÅCell parameters from 1387 reflections
b = 8.2683 (19) Åθ = 5.2–37.4°
c = 9.0056 (15) ŵ = 1.27 mm1
α = 73.010 (18)°T = 123 K
β = 69.698 (17)°Prism, green-blue
γ = 66.51 (2)°0.48 × 0.32 × 0.26 mm
V = 476.23 (18) Å3
Agilent Xcalibur Ruby CCD diffractometer4752 independent reflections
Radiation source: Enhance (Mo) X-ray Source3477 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 10.5081 pixels mm-1θmax = 37.8°, θmin = 5.1°
ω scansh = −12→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −13→14
Tmin = 0.690, Tmax = 1.000l = −15→15
8114 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0525P)2 + 0.1045P] where P = (Fo2 + 2Fc2)/3
4752 reflections(Δ/σ)max < 0.001
132 parametersΔρmax = 0.50 e Å3
3 restraintsΔρmin = −0.71 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.50000.50001.00000.02711 (9)
S1−0.10823 (7)0.89262 (6)0.85626 (6)0.03634 (11)
O10.3352 (3)0.1975 (2)0.47112 (16)0.0455 (4)
O1W0.5790 (2)0.7206 (2)0.85157 (16)0.0386 (3)
H1W10.671 (3)0.737 (4)0.859 (3)0.061 (9)*
H1W20.588 (4)0.737 (4)0.759 (2)0.056 (8)*
N30.2125 (2)0.6286 (2)0.9666 (2)0.0371 (3)
N10.5789 (2)0.38229 (19)0.78909 (16)0.0268 (3)
N20.2320 (3)0.1178 (2)0.73701 (18)0.0365 (3)
H2A0.14310.08010.72810.044*
H2B0.24390.11060.83270.044*
C70.0784 (3)0.7361 (2)0.92131 (19)0.0281 (3)
C10.4532 (2)0.3212 (2)0.76502 (18)0.0260 (3)
H1A0.32950.32780.84390.031*
C20.4940 (2)0.2486 (2)0.63092 (17)0.0246 (3)
C30.3476 (3)0.1854 (2)0.60664 (19)0.0279 (3)
C40.6734 (3)0.2419 (3)0.5151 (2)0.0327 (3)
H4A0.70510.19660.42020.039*
C50.8053 (3)0.3020 (3)0.5400 (2)0.0363 (4)
H5A0.93010.29680.46310.044*
C60.7533 (3)0.3700 (2)0.6787 (2)0.0314 (3)
H6A0.84570.40950.69560.038*
U11U22U33U12U13U23
Ni0.02907 (15)0.03414 (16)0.02262 (14)−0.01311 (12)−0.00883 (11)−0.00525 (11)
S10.0317 (2)0.0386 (2)0.0394 (2)−0.01499 (18)−0.01464 (18)0.00316 (18)
O10.0661 (10)0.0612 (9)0.0270 (6)−0.0368 (8)−0.0189 (6)−0.0029 (6)
O1W0.0531 (8)0.0506 (8)0.0262 (6)−0.0332 (7)−0.0161 (6)0.0029 (5)
N30.0325 (7)0.0469 (9)0.0357 (8)−0.0099 (7)−0.0125 (6)−0.0129 (7)
N10.0285 (6)0.0331 (6)0.0231 (5)−0.0131 (5)−0.0071 (5)−0.0068 (5)
N20.0404 (8)0.0497 (9)0.0279 (7)−0.0266 (7)−0.0045 (6)−0.0078 (6)
C70.0286 (7)0.0367 (8)0.0241 (6)−0.0158 (6)−0.0050 (6)−0.0079 (6)
C10.0276 (7)0.0333 (7)0.0203 (6)−0.0130 (6)−0.0041 (5)−0.0077 (5)
C20.0299 (7)0.0275 (6)0.0189 (6)−0.0118 (6)−0.0060 (5)−0.0049 (5)
C30.0341 (8)0.0289 (7)0.0238 (6)−0.0114 (6)−0.0082 (6)−0.0073 (5)
C40.0367 (8)0.0396 (9)0.0223 (6)−0.0152 (7)−0.0007 (6)−0.0110 (6)
C50.0308 (8)0.0472 (10)0.0309 (8)−0.0167 (8)0.0017 (7)−0.0136 (7)
C60.0283 (7)0.0384 (8)0.0303 (7)−0.0131 (7)−0.0073 (6)−0.0077 (7)
Ni—O1W2.0876 (15)N2—H2A0.8800
Ni—N32.0899 (17)N2—H2B0.8800
Ni—N12.1776 (14)C1—C21.389 (2)
S1—C71.6377 (18)C1—H1A0.9500
O1—C31.228 (2)C2—C41.386 (2)
O1W—H1W10.79 (2)C2—C31.497 (2)
O1W—H1W20.79 (2)C4—C51.380 (3)
N3—C71.158 (2)C4—H4A0.9500
N1—C61.334 (2)C5—C61.387 (2)
N1—C11.340 (2)C5—H5A0.9500
N2—C31.322 (2)C6—H6A0.9500
O1Wi—Ni—O1W180.00 (6)C3—N2—H2A120.0
O1Wi—Ni—N3i88.85 (7)C3—N2—H2B120.0
O1W—Ni—N3i91.15 (7)H2A—N2—H2B120.0
O1Wi—Ni—N391.15 (7)N3—C7—S1178.30 (17)
O1W—Ni—N388.85 (7)N1—C1—C2123.52 (15)
N3i—Ni—N3180.0N1—C1—H1A118.2
O1Wi—Ni—N190.25 (6)C2—C1—H1A118.2
O1W—Ni—N189.75 (6)C4—C2—C1117.97 (16)
N3i—Ni—N192.52 (6)C4—C2—C3120.08 (14)
N3—Ni—N187.48 (6)C1—C2—C3121.91 (15)
O1Wi—Ni—N1i89.75 (6)O1—C3—N2121.81 (17)
O1W—Ni—N1i90.25 (6)O1—C3—C2121.07 (16)
N3i—Ni—N1i87.48 (6)N2—C3—C2117.12 (14)
N3—Ni—N1i92.52 (6)C5—C4—C2118.94 (15)
N1—Ni—N1i180.000 (1)C5—C4—H4A120.5
Ni—O1W—H1W1118 (2)C2—C4—H4A120.5
Ni—O1W—H1W2119 (2)C4—C5—C6119.16 (17)
H1W1—O1W—H1W2107 (2)C4—C5—H5A120.4
C7—N3—Ni160.38 (17)C6—C5—H5A120.4
C6—N1—C1117.68 (14)N1—C6—C5122.70 (17)
C6—N1—Ni121.18 (12)N1—C6—H6A118.7
C1—N1—Ni121.14 (11)C5—C6—H6A118.7
O1Wi—Ni—N3—C7−179.4 (4)Ni—N1—C1—C2178.49 (12)
O1W—Ni—N3—C70.6 (4)N1—C1—C2—C4−1.0 (2)
N1—Ni—N3—C7−89.2 (4)N1—C1—C2—C3−178.64 (14)
N1i—Ni—N3—C790.8 (4)C4—C2—C3—O1−30.6 (2)
O1Wi—Ni—N1—C6−130.61 (14)C1—C2—C3—O1147.02 (17)
O1W—Ni—N1—C649.39 (14)C4—C2—C3—N2149.97 (17)
N3i—Ni—N1—C6−41.75 (14)C1—C2—C3—N2−32.4 (2)
N3—Ni—N1—C6138.25 (14)C1—C2—C4—C51.9 (3)
O1Wi—Ni—N1—C150.01 (13)C3—C2—C4—C5179.63 (16)
O1W—Ni—N1—C1−129.99 (13)C2—C4—C5—C6−1.0 (3)
N3i—Ni—N1—C1138.87 (13)C1—N1—C6—C51.9 (3)
N3—Ni—N1—C1−41.13 (13)Ni—N1—C6—C5−177.55 (14)
C6—N1—C1—C2−0.9 (2)C4—C5—C6—N1−0.9 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···S1ii0.79 (3)2.47 (3)3.224 (2)161 (3)
O1W—H1W2···O1iii0.79 (2)1.92 (2)2.686 (2)164 (3)
N2—H2A···S1iv0.882.673.459 (2)150
N2—H2B···S1v0.882.623.435 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W1⋯S1i 0.79 (3)2.47 (3)3.224 (2)161 (3)
O1W—H1W2⋯O1ii 0.79 (2)1.92 (2)2.686 (2)164 (3)
N2—H2A⋯S1iii 0.882.673.459 (2)150
N2—H2B⋯S1iv 0.882.623.435 (2)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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