| Literature DB >> 24860314 |
Deepanjali Pandey1, Shahid S Narvi1, Gopal K Mehrotra1, Raymond J Butcher2.
Abstract
In the title complex, [Ni(NCS)2(C6H6N2O)2(H2O)2], the Ni(II) ion is located on an inversion center and is coordinated in a distorted octa-hedral environment by two N atoms from two nicotinamide ligands and two water mol-ecules in the equatorial plane, and two N atoms from two thio-cyanate anions in the axial positions, all acting as monodentate ligands. In the crystal, weak N-H⋯S hydrogen bonds between the amino groups and the thio-cyanate anions form an R 4 (2)(8) motif. The complex mol-ecules are linked by O-H⋯O, O-H⋯S, and N-H⋯S hydrogen bonds into a three-dimensional supra-molecular structure. Weak π-π inter-actions between the pyridine rings is also found [centroid-centroid distance = 3.8578 (14) Å].Entities:
Year: 2014 PMID: 24860314 PMCID: PMC4011277 DOI: 10.1107/S1600536814006771
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(NCS)2(C6H6N2O)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1387 reflections | |
| θ = 5.2–37.4° | |
| µ = 1.27 mm−1 | |
| α = 73.010 (18)° | |
| β = 69.698 (17)° | Prism, green-blue |
| γ = 66.51 (2)° | 0.48 × 0.32 × 0.26 mm |
| Agilent Xcalibur Ruby CCD diffractometer | 4752 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 3477 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 37.8°, θmin = 5.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8114 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4752 reflections | (Δ/σ)max < 0.001 |
| 132 parameters | Δρmax = 0.50 e Å−3 |
| 3 restraints | Δρmin = −0.71 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni | 0.5000 | 0.5000 | 1.0000 | 0.02711 (9) | |
| S1 | −0.10823 (7) | 0.89262 (6) | 0.85626 (6) | 0.03634 (11) | |
| O1 | 0.3352 (3) | 0.1975 (2) | 0.47112 (16) | 0.0455 (4) | |
| O1W | 0.5790 (2) | 0.7206 (2) | 0.85157 (16) | 0.0386 (3) | |
| H1W1 | 0.671 (3) | 0.737 (4) | 0.859 (3) | 0.061 (9)* | |
| H1W2 | 0.588 (4) | 0.737 (4) | 0.759 (2) | 0.056 (8)* | |
| N3 | 0.2125 (2) | 0.6286 (2) | 0.9666 (2) | 0.0371 (3) | |
| N1 | 0.5789 (2) | 0.38229 (19) | 0.78909 (16) | 0.0268 (3) | |
| N2 | 0.2320 (3) | 0.1178 (2) | 0.73701 (18) | 0.0365 (3) | |
| H2A | 0.1431 | 0.0801 | 0.7281 | 0.044* | |
| H2B | 0.2439 | 0.1106 | 0.8327 | 0.044* | |
| C7 | 0.0784 (3) | 0.7361 (2) | 0.92131 (19) | 0.0281 (3) | |
| C1 | 0.4532 (2) | 0.3212 (2) | 0.76502 (18) | 0.0260 (3) | |
| H1A | 0.3295 | 0.3278 | 0.8439 | 0.031* | |
| C2 | 0.4940 (2) | 0.2486 (2) | 0.63092 (17) | 0.0246 (3) | |
| C3 | 0.3476 (3) | 0.1854 (2) | 0.60664 (19) | 0.0279 (3) | |
| C4 | 0.6734 (3) | 0.2419 (3) | 0.5151 (2) | 0.0327 (3) | |
| H4A | 0.7051 | 0.1966 | 0.4202 | 0.039* | |
| C5 | 0.8053 (3) | 0.3020 (3) | 0.5400 (2) | 0.0363 (4) | |
| H5A | 0.9301 | 0.2968 | 0.4631 | 0.044* | |
| C6 | 0.7533 (3) | 0.3700 (2) | 0.6787 (2) | 0.0314 (3) | |
| H6A | 0.8457 | 0.4095 | 0.6956 | 0.038* |
| Ni | 0.02907 (15) | 0.03414 (16) | 0.02262 (14) | −0.01311 (12) | −0.00883 (11) | −0.00525 (11) |
| S1 | 0.0317 (2) | 0.0386 (2) | 0.0394 (2) | −0.01499 (18) | −0.01464 (18) | 0.00316 (18) |
| O1 | 0.0661 (10) | 0.0612 (9) | 0.0270 (6) | −0.0368 (8) | −0.0189 (6) | −0.0029 (6) |
| O1W | 0.0531 (8) | 0.0506 (8) | 0.0262 (6) | −0.0332 (7) | −0.0161 (6) | 0.0029 (5) |
| N3 | 0.0325 (7) | 0.0469 (9) | 0.0357 (8) | −0.0099 (7) | −0.0125 (6) | −0.0129 (7) |
| N1 | 0.0285 (6) | 0.0331 (6) | 0.0231 (5) | −0.0131 (5) | −0.0071 (5) | −0.0068 (5) |
| N2 | 0.0404 (8) | 0.0497 (9) | 0.0279 (7) | −0.0266 (7) | −0.0045 (6) | −0.0078 (6) |
| C7 | 0.0286 (7) | 0.0367 (8) | 0.0241 (6) | −0.0158 (6) | −0.0050 (6) | −0.0079 (6) |
| C1 | 0.0276 (7) | 0.0333 (7) | 0.0203 (6) | −0.0130 (6) | −0.0041 (5) | −0.0077 (5) |
| C2 | 0.0299 (7) | 0.0275 (6) | 0.0189 (6) | −0.0118 (6) | −0.0060 (5) | −0.0049 (5) |
| C3 | 0.0341 (8) | 0.0289 (7) | 0.0238 (6) | −0.0114 (6) | −0.0082 (6) | −0.0073 (5) |
| C4 | 0.0367 (8) | 0.0396 (9) | 0.0223 (6) | −0.0152 (7) | −0.0007 (6) | −0.0110 (6) |
| C5 | 0.0308 (8) | 0.0472 (10) | 0.0309 (8) | −0.0167 (8) | 0.0017 (7) | −0.0136 (7) |
| C6 | 0.0283 (7) | 0.0384 (8) | 0.0303 (7) | −0.0131 (7) | −0.0073 (6) | −0.0077 (7) |
| Ni—O1W | 2.0876 (15) | N2—H2A | 0.8800 |
| Ni—N3 | 2.0899 (17) | N2—H2B | 0.8800 |
| Ni—N1 | 2.1776 (14) | C1—C2 | 1.389 (2) |
| S1—C7 | 1.6377 (18) | C1—H1A | 0.9500 |
| O1—C3 | 1.228 (2) | C2—C4 | 1.386 (2) |
| O1W—H1W1 | 0.79 (2) | C2—C3 | 1.497 (2) |
| O1W—H1W2 | 0.79 (2) | C4—C5 | 1.380 (3) |
| N3—C7 | 1.158 (2) | C4—H4A | 0.9500 |
| N1—C6 | 1.334 (2) | C5—C6 | 1.387 (2) |
| N1—C1 | 1.340 (2) | C5—H5A | 0.9500 |
| N2—C3 | 1.322 (2) | C6—H6A | 0.9500 |
| O1Wi—Ni—O1W | 180.00 (6) | C3—N2—H2A | 120.0 |
| O1Wi—Ni—N3i | 88.85 (7) | C3—N2—H2B | 120.0 |
| O1W—Ni—N3i | 91.15 (7) | H2A—N2—H2B | 120.0 |
| O1Wi—Ni—N3 | 91.15 (7) | N3—C7—S1 | 178.30 (17) |
| O1W—Ni—N3 | 88.85 (7) | N1—C1—C2 | 123.52 (15) |
| N3i—Ni—N3 | 180.0 | N1—C1—H1A | 118.2 |
| O1Wi—Ni—N1 | 90.25 (6) | C2—C1—H1A | 118.2 |
| O1W—Ni—N1 | 89.75 (6) | C4—C2—C1 | 117.97 (16) |
| N3i—Ni—N1 | 92.52 (6) | C4—C2—C3 | 120.08 (14) |
| N3—Ni—N1 | 87.48 (6) | C1—C2—C3 | 121.91 (15) |
| O1Wi—Ni—N1i | 89.75 (6) | O1—C3—N2 | 121.81 (17) |
| O1W—Ni—N1i | 90.25 (6) | O1—C3—C2 | 121.07 (16) |
| N3i—Ni—N1i | 87.48 (6) | N2—C3—C2 | 117.12 (14) |
| N3—Ni—N1i | 92.52 (6) | C5—C4—C2 | 118.94 (15) |
| N1—Ni—N1i | 180.000 (1) | C5—C4—H4A | 120.5 |
| Ni—O1W—H1W1 | 118 (2) | C2—C4—H4A | 120.5 |
| Ni—O1W—H1W2 | 119 (2) | C4—C5—C6 | 119.16 (17) |
| H1W1—O1W—H1W2 | 107 (2) | C4—C5—H5A | 120.4 |
| C7—N3—Ni | 160.38 (17) | C6—C5—H5A | 120.4 |
| C6—N1—C1 | 117.68 (14) | N1—C6—C5 | 122.70 (17) |
| C6—N1—Ni | 121.18 (12) | N1—C6—H6A | 118.7 |
| C1—N1—Ni | 121.14 (11) | C5—C6—H6A | 118.7 |
| O1Wi—Ni—N3—C7 | −179.4 (4) | Ni—N1—C1—C2 | 178.49 (12) |
| O1W—Ni—N3—C7 | 0.6 (4) | N1—C1—C2—C4 | −1.0 (2) |
| N1—Ni—N3—C7 | −89.2 (4) | N1—C1—C2—C3 | −178.64 (14) |
| N1i—Ni—N3—C7 | 90.8 (4) | C4—C2—C3—O1 | −30.6 (2) |
| O1Wi—Ni—N1—C6 | −130.61 (14) | C1—C2—C3—O1 | 147.02 (17) |
| O1W—Ni—N1—C6 | 49.39 (14) | C4—C2—C3—N2 | 149.97 (17) |
| N3i—Ni—N1—C6 | −41.75 (14) | C1—C2—C3—N2 | −32.4 (2) |
| N3—Ni—N1—C6 | 138.25 (14) | C1—C2—C4—C5 | 1.9 (3) |
| O1Wi—Ni—N1—C1 | 50.01 (13) | C3—C2—C4—C5 | 179.63 (16) |
| O1W—Ni—N1—C1 | −129.99 (13) | C2—C4—C5—C6 | −1.0 (3) |
| N3i—Ni—N1—C1 | 138.87 (13) | C1—N1—C6—C5 | 1.9 (3) |
| N3—Ni—N1—C1 | −41.13 (13) | Ni—N1—C6—C5 | −177.55 (14) |
| C6—N1—C1—C2 | −0.9 (2) | C4—C5—C6—N1 | −0.9 (3) |
| H··· | ||||
| O1 | 0.79 (3) | 2.47 (3) | 3.224 (2) | 161 (3) |
| O1 | 0.79 (2) | 1.92 (2) | 2.686 (2) | 164 (3) |
| N2—H2 | 0.88 | 2.67 | 3.459 (2) | 150 |
| N2—H2 | 0.88 | 2.62 | 3.435 (2) | 154 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.79 (3) | 2.47 (3) | 3.224 (2) | 161 (3) |
| O1 | 0.79 (2) | 1.92 (2) | 2.686 (2) | 164 (3) |
| N2—H2 | 0.88 | 2.67 | 3.459 (2) | 150 |
| N2—H2 | 0.88 | 2.62 | 3.435 (2) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .