Literature DB >> 21581889

Ethyl 5-amino-1-(4-chloro-2-nitro-phen-yl)-1H-pyrazole-4-carboxyl-ate.

Muhammad Zia-Ur-Rehman, Mark R J Elsegood, Jamil Anwar Choudary, Muhammad Fasih Ullah, Hamid Latif Siddiqui.   

Abstract

In the mol-ecule of the title compound, C(12)H(11)ClN(4)O(4), the pyrazole ring is coplanar with the amino and ethoxy-carbonyl groups within 0.026 (2) and 0.105 (2) Å, respectively. The C(6) ring of the 4-chloro-2-nitro-phenyl group is twisted by 53.58 (4)° relative to the plane of the pyrazole ring. The planar structure of the pyrazole ring is stabilized by an intra-molecular N-H⋯O hydrogen bond between its substituents. Neighbouring mol-ecules are linked through inter-molecular N-H⋯N and N-H⋯O hydrogen bonds, giving rise to one-dimensional tapes along the b axis. Mol-ecules in the chain are linked to those of an adjacent chain through weak C-H⋯O inter-actions, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21581889      PMCID: PMC2968147          DOI: 10.1107/S1600536809000488

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazole and its derivatives, see: Iovu et al. (2003 ▶); Mahajan et al. (1991 ▶); related literature, see: Akhtar et al. (2008 ▶); Baraldi et al. (1998 ▶); Bruno et al. (1990 ▶); Cottineau et al. (2002 ▶); Smith et al. (2001 ▶). For the use of pyrazole-based ligands in investigating the structure–activity relationship of the active site of metalloproteins, see: Dardari et al. (2006 ▶), and in the preparation of commercially important dyestuffs, see: Baroni & Kovyrzina (1961 ▶); Neunhoeffer et al. (1959 ▶). For the synthesis and biological evaluation of heterocyclic compounds, see: Akhtar et al. (2008 ▶); Zia-ur-Rehman et al. (2006 ▶, 2008 ▶).

Experimental

Crystal data

C12H11ClN4O4 M = 310.70 Monoclinic, a = 8.5899 (8) Å b = 10.2413 (9) Å c = 15.6633 (14) Å β = 96.5415 (13)° V = 1369.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 150 (2) K 0.79 × 0.27 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.797, T max = 0.973 15944 measured reflections 4189 independent reflections 3588 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.096 S = 1.04 4189 reflections 197 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809000488/bt2841sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000488/bt2841Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11ClN4O4F(000) = 640
Mr = 310.70Dx = 1.508 Mg m3
Monoclinic, P21/nMelting point: 435 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 8.5899 (8) ÅCell parameters from 6502 reflections
b = 10.2413 (9) Åθ = 2.6–30.6°
c = 15.6633 (14) ŵ = 0.30 mm1
β = 96.5415 (13)°T = 150 K
V = 1369.0 (2) Å3Lath, colourless
Z = 40.79 × 0.27 × 0.09 mm
Bruker APEXII CCD diffractometer4189 independent reflections
Radiation source: fine-focus sealed tube3588 reflections with I > 2σ(I)
graphiteRint = 0.022
ω rotation with narrow frames scansθmax = 30.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)h = −12→12
Tmin = 0.797, Tmax = 0.973k = −14→14
15944 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: all non-H atoms found by direct methods
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: geom except NH coords freely refined
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0507P)2 + 0.3692P] where P = (Fo2 + 2Fc2)/3
4189 reflections(Δ/σ)max = 0.001
197 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.16661 (12)0.37722 (10)0.87165 (6)0.01863 (19)
N10.00154 (11)0.39144 (9)0.83571 (6)0.02209 (18)
O1−0.04727 (11)0.32020 (9)0.77617 (6)0.0316 (2)
O2−0.07682 (10)0.47313 (9)0.86871 (6)0.03110 (19)
C20.19621 (13)0.36020 (11)0.95971 (7)0.0216 (2)
H20.11350.36090.99510.026*
C30.35046 (14)0.34216 (10)0.99458 (7)0.0224 (2)
Cl10.39123 (4)0.31052 (3)1.103127 (17)0.03302 (9)
C40.47238 (13)0.34677 (11)0.94341 (7)0.0229 (2)
H40.57770.33700.96850.028*
C50.43941 (13)0.36565 (10)0.85546 (7)0.0218 (2)
H50.52270.36910.82050.026*
C60.28554 (12)0.37949 (10)0.81810 (6)0.01836 (19)
N20.25381 (11)0.40263 (9)0.72882 (5)0.01940 (17)
N30.16947 (11)0.51311 (9)0.69958 (6)0.02197 (19)
C70.17042 (12)0.51027 (10)0.61560 (7)0.0206 (2)
H70.12150.57440.57780.025*
C80.25215 (12)0.40156 (10)0.58811 (6)0.01772 (19)
C90.30396 (12)0.33322 (10)0.66310 (6)0.01755 (19)
N40.39081 (12)0.22356 (9)0.67437 (6)0.0241 (2)
H4A0.4077 (18)0.1853 (14)0.6270 (11)0.029*
H4B0.3806 (18)0.1713 (14)0.7173 (10)0.029*
C100.28074 (12)0.36124 (10)0.50279 (6)0.01900 (19)
O30.35936 (10)0.26670 (8)0.48774 (5)0.02577 (17)
O40.20696 (9)0.43861 (8)0.44194 (5)0.02405 (17)
C110.23017 (13)0.40996 (12)0.35329 (7)0.0250 (2)
H11A0.13770.43960.31460.030*
H11B0.24070.31450.34600.030*
C120.37412 (17)0.47691 (14)0.32935 (9)0.0355 (3)
H12A0.36550.57110.33890.053*
H12B0.38450.46050.26860.053*
H12C0.46650.44290.36490.053*
U11U22U33U12U13U23
C10.0220 (5)0.0179 (4)0.0160 (4)0.0002 (4)0.0023 (4)−0.0002 (3)
N10.0232 (4)0.0248 (4)0.0183 (4)−0.0023 (3)0.0024 (3)0.0032 (3)
O10.0339 (5)0.0367 (5)0.0230 (4)−0.0084 (4)−0.0021 (3)−0.0042 (3)
O20.0271 (4)0.0339 (5)0.0330 (5)0.0062 (3)0.0063 (3)−0.0003 (4)
C20.0273 (5)0.0227 (5)0.0153 (4)−0.0007 (4)0.0047 (4)−0.0004 (4)
C30.0319 (5)0.0202 (5)0.0146 (4)0.0005 (4)0.0007 (4)−0.0002 (4)
Cl10.04426 (18)0.03893 (17)0.01462 (13)0.00482 (13)−0.00204 (11)0.00275 (10)
C40.0253 (5)0.0213 (5)0.0213 (5)0.0024 (4)−0.0011 (4)0.0009 (4)
C50.0243 (5)0.0208 (5)0.0209 (5)0.0029 (4)0.0054 (4)0.0020 (4)
C60.0256 (5)0.0164 (4)0.0134 (4)0.0016 (4)0.0035 (4)0.0008 (3)
N20.0258 (4)0.0188 (4)0.0142 (4)0.0057 (3)0.0046 (3)0.0019 (3)
N30.0291 (4)0.0192 (4)0.0179 (4)0.0085 (3)0.0044 (3)0.0019 (3)
C70.0237 (5)0.0207 (5)0.0174 (4)0.0043 (4)0.0030 (4)0.0022 (4)
C80.0202 (4)0.0185 (4)0.0149 (4)0.0013 (3)0.0038 (3)0.0015 (3)
C90.0205 (4)0.0171 (4)0.0156 (4)0.0007 (3)0.0048 (3)0.0004 (3)
N40.0361 (5)0.0188 (4)0.0187 (4)0.0091 (4)0.0090 (4)0.0037 (3)
C100.0193 (4)0.0223 (5)0.0157 (4)−0.0012 (4)0.0028 (3)0.0010 (4)
O30.0318 (4)0.0266 (4)0.0196 (4)0.0076 (3)0.0058 (3)−0.0015 (3)
O40.0266 (4)0.0313 (4)0.0145 (3)0.0064 (3)0.0031 (3)0.0029 (3)
C110.0238 (5)0.0369 (6)0.0141 (4)−0.0005 (4)0.0019 (4)0.0012 (4)
C120.0395 (7)0.0374 (7)0.0321 (6)−0.0095 (6)0.0150 (5)0.0001 (5)
C1—C21.3848 (14)C7—C81.4096 (14)
C1—C61.3940 (14)C7—H70.9500
C1—N11.4719 (14)C8—C91.3958 (14)
N1—O11.2202 (13)C8—C101.4462 (14)
N1—O21.2245 (13)C9—N41.3487 (13)
C2—C31.3868 (16)N4—H4A0.866 (16)
C2—H20.9500N4—H4B0.871 (15)
C3—C41.3902 (16)C10—O31.2188 (13)
C3—Cl11.7271 (11)C10—O41.3418 (12)
C4—C51.3881 (15)O4—C111.4549 (13)
C4—H40.9500C11—C121.4985 (17)
C5—C61.3904 (15)C11—H11A0.9900
C5—H50.9500C11—H11B0.9900
C6—N21.4140 (12)C12—H12A0.9800
N2—C91.3607 (13)C12—H12B0.9800
N2—N31.3925 (12)C12—H12C0.9800
N3—C71.3166 (13)
C2—C1—C6122.51 (10)C8—C7—H7123.8
C2—C1—N1116.93 (9)C9—C8—C7105.13 (9)
C6—C1—N1120.55 (9)C9—C8—C10124.27 (9)
O1—N1—O2125.00 (10)C7—C8—C10130.60 (9)
O1—N1—C1117.73 (9)N4—C9—N2123.64 (9)
O2—N1—C1117.26 (9)N4—C9—C8130.26 (9)
C1—C2—C3117.89 (10)N2—C9—C8106.06 (9)
C1—C2—H2121.1C9—N4—H4A114.1 (10)
C3—C2—H2121.1C9—N4—H4B120.7 (10)
C2—C3—C4121.15 (10)H4A—N4—H4B115.1 (14)
C2—C3—Cl1119.35 (9)O3—C10—O4123.99 (9)
C4—C3—Cl1119.49 (9)O3—C10—C8124.18 (9)
C5—C4—C3119.67 (10)O4—C10—C8111.82 (9)
C5—C4—H4120.2C10—O4—C11116.99 (9)
C3—C4—H4120.2O4—C11—C12110.69 (10)
C4—C5—C6120.57 (10)O4—C11—H11A109.5
C4—C5—H5119.7C12—C11—H11A109.5
C6—C5—H5119.7O4—C11—H11B109.5
C5—C6—C1118.15 (9)C12—C11—H11B109.5
C5—C6—N2120.01 (9)H11A—C11—H11B108.1
C1—C6—N2121.74 (9)C11—C12—H12A109.5
C9—N2—N3111.92 (8)C11—C12—H12B109.5
C9—N2—C6128.23 (9)H12A—C12—H12B109.5
N3—N2—C6119.72 (8)C11—C12—H12C109.5
C7—N3—N2104.38 (8)H12A—C12—H12C109.5
N3—C7—C8112.50 (9)H12B—C12—H12C109.5
N3—C7—H7123.8
C2—C1—N1—O1−127.78 (11)C9—N2—N3—C7−0.53 (12)
C6—C1—N1—O151.47 (14)C6—N2—N3—C7175.66 (9)
C2—C1—N1—O251.39 (13)N2—N3—C7—C80.14 (12)
C6—C1—N1—O2−129.37 (11)N3—C7—C8—C90.27 (12)
C6—C1—C2—C3−1.37 (16)N3—C7—C8—C10179.76 (10)
N1—C1—C2—C3177.85 (9)N3—N2—C9—N4178.62 (10)
C1—C2—C3—C42.81 (16)C6—N2—C9—N42.83 (17)
C1—C2—C3—Cl1−176.02 (8)N3—N2—C9—C80.70 (12)
C2—C3—C4—C5−2.04 (17)C6—N2—C9—C8−175.09 (10)
Cl1—C3—C4—C5176.78 (8)C7—C8—C9—N4−178.30 (11)
C3—C4—C5—C6−0.24 (16)C10—C8—C9—N42.17 (18)
C4—C5—C6—C11.62 (16)C7—C8—C9—N2−0.57 (11)
C4—C5—C6—N2178.08 (10)C10—C8—C9—N2179.90 (10)
C2—C1—C6—C5−0.81 (16)C9—C8—C10—O3−3.61 (17)
N1—C1—C6—C5179.99 (9)C7—C8—C10—O3176.99 (11)
C2—C1—C6—N2−177.21 (10)C9—C8—C10—O4174.82 (10)
N1—C1—C6—N23.59 (15)C7—C8—C10—O4−4.59 (16)
C5—C6—N2—C952.72 (15)O3—C10—O4—C11−3.17 (15)
C1—C6—N2—C9−130.95 (11)C8—C10—O4—C11178.40 (9)
C5—C6—N2—N3−122.79 (11)C10—O4—C11—C12−86.64 (13)
C1—C6—N2—N353.54 (14)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O30.866 (16)2.328 (16)2.9383 (13)127.7 (12)
N4—H4A···O2i0.866 (16)2.610 (15)3.1356 (13)120.1 (12)
N4—H4B···N3i0.871 (15)2.153 (16)3.0074 (13)166.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯O30.866 (16)2.328 (16)2.9383 (13)127.7 (12)
N4—H4A⋯O2i0.866 (16)2.610 (15)3.1356 (13)120.1 (12)
N4—H4B⋯N3i0.871 (15)2.153 (16)3.0074 (13)166.8 (14)

Symmetry code: (i) .

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