Literature DB >> 35371546

Crystal structures and Hirshfeld surface analysis of 5-amino-1-(4-meth-oxy-phen-yl)pyrazole-4-carb-ox-ylic acid and 5-amino-3-(4-meth-oxy-phen-yl)isoxazole.

Chris J Pintro1, Analeece K Long1, Allison J Amonette1, James M Lobue1, Clifford W Padgett1.   

Abstract

The title compounds, C11H11N3O3, (I), and C10H10N2O2, (II), are commercially available and were crystallized from ethyl acetate solution. The dihedral angle between the pyrazole and phenyl rings in (I) is 52.34 (7)° and the equivalent angle between the isoxazole and phenyl rings in (II) is 7.30 (13)°. In the crystal of (I), the mol-ecules form carb-oxy-lic acid inversion dimers with an R(8) ring motif via pairwise O-H⋯O hydrogen bonds. In the crystal of (II), the mol-ecules are linked via N-H⋯N hydrogen bonds forming chains propagating along [010] with a C(5) motif. A weak N-H⋯π inter-action also features in the packing of (II). Hirshfeld surface analysis was used to explore the inter-molecular contacts in the crystals of both title compounds: the most important contacts for (I) are H⋯H (41.5%) and O⋯H/H⋯O (22.4%). For (II), the most significant contact percentages are H⋯H (36.1%) followed by C⋯H/H⋯C (31.3%). © Pintro et al. 2022.

Entities:  

Keywords:  Hirshfeld surface; X-ray diffraction; crystal structure; isoxazole

Year:  2022        PMID: 35371546      PMCID: PMC8900502          DOI: 10.1107/S2056989022001827

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

This report is one of a series on the structures and hydrogen-bonding motifs in small-mol­ecule aromatic amino carb­oxy­lic acids (I) and small-mol­ecule aromatic amino compounds (II). This study follows other reports including, for example, 3-amino­pyrazine-2-carb­oxy­lic acid (Dobson & Gerkin, 1996 ▸), 5-amino­isophthalic acid hemihydrate (Dobson & Gerkin, 1998 ▸), and 1,4-di­benzyl­piperazine-2,5-dione (Nunez, et al., 2004 ▸). We now describe the structures of 5-amino-1-(4-meth­oxy­phen­yl)-pyrazole-4-carb­oxy­lic acid, (I) and 5-amino-3-(4-meth­oxy­phen­yl)isoxazole, (II).

Structural commentary

The mol­ecular structure of compound (I) is shown in Fig. 1 ▸. The pyrazole ring (r.m.s. deviation = 0.010 Å) is rotated by 52.34 (7)° relative to the phenyl ring (r.m.s. deviation = 0.010 Å), which is the primary contribution to the general non-planarity of the mol­ecule. An intra­molecular N3—H3A⋯O2 hydrogen bond is observed (Table 1 ▸ and Fig. 1 ▸). This bond forms an S(6) ring motif (Fig. 1 ▸ and Table 1 ▸) with an N3⋯O2 distance of 2.941 (3) Å. This is a common feature in analogous compounds (such as those listed in the Database survey). The C3—N3 distance of 1.353 (2) Å is typical for an amino group bound to an aromatic ring. The carb­oxy­lic carbon–oxygen distances are 1.255 (2) and 1.316 (2) for C4—O2 and C4—O1, respectively, indicating that the former bond may be affected by the intra­molecular N—H⋯O hydrogen bond.
Figure 1

The mol­ecular structure of (I) with displacement ellipsoids drawn at the 50% probability level. The intra­molecular hydrogen bond is represented by a red dashed line.

Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O20.87 (2)2.32 (2)2.941 (3)128.5 (18)
O1—H1⋯O2i 0.90 (2)1.75 (2)2.649 (2)176 (3)

Symmetry code: (i) .

The mol­ecular structure of compound (II) is shown in Fig. 2 ▸. The angle between the phenyl and isoxazole rings is 7.30 (13)°, resulting in the overall mol­ecule being close to planar with the r.m.s. deviation of all non-hydrogen atoms being 0.054 Å. The N1—O1 distance is 1.434 (4) Å and is consistent with other isoxazoles (see Database survey section). The C3—N2 distance is 1.350 (5) Å and is typical of an amino group bound to an aromatic ring.
Figure 2

The mol­ecular structure of (II) with displacement ellipsoids drawn at the 50% probability level.

Supra­molecular features

In the extended structure of (I), the mol­ecules form centrosymmetric hydrogen-bonded dimers via the O1—H1⋯O2i [symmetry code: (i) −x + 1, −y, −z + 1] link to generate an R(8) loop with O⋯O = 2.649 (2) Å, see Table 1 ▸ and Fig. 3 ▸. These dimers are linked via π–π inter­actions, notably weak stacking inter­actions between the 4-meth­oxy­phenyl rings [Cg1⋯Cg1 (x + 1, y, z) = 3.9608 (4) Å, where Cg1 is the centroid of the C5–C10 ring] along the a-axis direction.
Figure 3

A view along the a-axis direction of the crystal packing of (I) with hydrogen bonds shown as red dashed lines.

In the packing of (II), the mol­ecules form hydrogen-bonded chains running along the b-axis direction via the N2—H2A⋯N1i hydrogen bond [symmetry code: (i) −x + 1, y +  , −z +  ] hydrogen bond forms a C(5) chain motif with an N⋯N distance of 3.003 (5) Å, see Table 2 ▸ and Fig. 4 ▸. No π–π inter­actions are observed.
Table 2

Hydrogen-bond geometry (Å, °) for (II)

Cg2 is the centroid of the C4–C9 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N1i 0.89 (3)2.12 (3)3.003 (5)174 (6)
N2—H2BCg2ii 0.85 (2)2.97 (4)3.709 (4)147 (4)

Symmetry codes: (i) ; (ii) .

Figure 4

A view along the a-axis direction of the crystal packing of (II) with hydrogen bonds shown as red dashed lines.

Hirshfeld surface analysis

The inter­molecular inter­actions were further investigated by qu­anti­tative analysis of the Hirshfeld surface, and visualized with Crystal Explorer 17.5 (Turner et al., 2017 ▸; Spackman et al., 2009 ▸) and the two-dimensional fingerprint plots (McKinnon et al., 2007 ▸). The shorter and longer contacts are indicated as red and blue spots, respectively, on the Hirshfeld surfaces, and contacts with distances approximately equal to the sum of the van der Waals radii are colored white. The function d norm is a ratio enclosing the distances of any surface point to the nearest inter­ior (d i) and exterior (d e) atom and the van der Waals (vdW) radii of the atoms. The d norm plots were mapped with a color scale between −0.18 au (blue) and +1.4 au (red). Fig. 5 ▸. shows the d norm surface of compound (I). The most intense red spots on the d norm surface correspond to the O1—H1⋯O2 inter­actions. The red and blue triangles on the shape-index surface indicate that there are weak π-stacking inter­actions in the crystal structure. Analysis of the two-dimensional fingerprint plots indicate that the H⋯H (41.5%) inter­actions are the major factor in the crystal packing with O⋯H/H⋯O (22.4%) inter­actions making the next highest contribution. The percentage contributions of other significant contacts are: C⋯H/H⋯C (13.1%) and N⋯H/ H⋯N (8.7%).
Figure 5

Hirshfeld surface for (I) mapped over d norm.

Fig. 6 ▸ shows the d norm surface of compound (II). The large red spots represent N2—H2A⋯N1 inter­actions. Some additional inter­actions indicated by very light-red spots correspond to contacts around phenyl ring and isoxazole rings: N2—H2B⋯Cg1ii [2.97 (4) Å], C6—H6⋯Cg1iii (2.86 Å) and C9—H9⋯Cg2ii (2.86 Å) [symmetry codes: (ii) x +  , −y +  , −z + 1; (iii) x −  , −y +  , −z + 1; Cg1 and Cg2 are the centroids of the O1/N1/C1–C3 and C4–C9 rings, respectively]. Analysis of the two-dimensional fingerprint plots indicates that the H⋯H (36.1%) inter­actions are the major factor in the crystal packing with C⋯H/H⋯C (31.3%) contacts making the next highest contribution. The percentage contributions of other weak inter­actions are: O⋯H/H⋯O (17.3%) and N⋯H/ H⋯N (12.1%). Figures showing the shape-index surface for each compound and the overall fingerprint plots are included in the supporting information.
Figure 6

Hirshfeld surface for (II) mapped over d norm.

Database survey

A search of the Cambridge Structural Database (CSD, version 5.42, update of November 2020; Groom et al., 2016 ▸) gave 13 hits for the 3-phenyl­isoxazol-5-amine moiety. The four most closely related compounds are: 5-di­acetyl­amino-3,4-di­phenyl­isoxazole (CSD refcode ACPIXZ; Simon et al., 1974 ▸), 1,5-dimethyl-4-phenyl-3-(3-phenyl-1,2-oxazol-5-yl)imidazol­id­in-2-one (HOGYAE; Li et al., 2007 ▸), N-4-dimethyl-N-[3-{4-(tri­fluoro­meth­yl)phen­yl]-1,2-oxazol-5-yl}benzene-1-sulfonamide (XOSHUL; Chen & Cui, 2019 ▸), 3-phenyl-5-(1H-pyrazol-1-yl)-1,2-oxazole (ZEVGIT; Mikhailov et al., 2018 ▸). A similar search gave 14 hits for the 5-amino-1-phenyl-1H-pyrazole-4-carb­oxy­lic acid moiety. The seven most closely related compounds are: ethyl 1-(4-chloro-2-nitro­phen­yl)-5-nitro-4,5-di­hydro-1H-pyrazole-4-carboxyl­ate (GOLHEV; Zia-ur-Rehman et al., 2009 ▸), 5-amino-1-phenyl-3-(tri­fluoro­meth­yl)-1H-pyrazole-4-carb­oxy­lic acid (HUDDEQ; Caruso et al., 2009 ▸), 5-amino-1-phenyl-1H-pyrazole-4-carb­oxy­lic acid (KODXIL; Zia-ur-Rehman et al., 2008 ▸), ethyl 5-amino-1-(2,4-di­nitro­phen­yl)-1H-pyrazole-4-carboxyl­ate (QAHJER; Ghorab et al., 2016 ▸), ethyl 5-amino-1-phenyl-1H-pyrazole-4-carboxyl­ate (RUVHUO, Soares et al., 2020 ▸), ethyl 5-amino-1-(4-sulfamoylphen­yl)-1H-pyrazole-4-carboxyl­ate (XUTZIX; Ibrahim et al., 2015 ▸) and 2-eth­oxy­ethyl 5-amino-1-(2,4-di­methyl­phen­yl)-3-(methyl­thio)-1H-pyrazole-4-carboxyl­ate (YOYHOK, Liu et al., 2009 ▸).

Synthesis and crystallization

Compounds (I) and (II) are commercially available and were purchased from Aldrich. Both were dissolved in ethyl acetate until saturated and these solutions were allowed to evaporate slowly at room temperature, which resulted in X-ray quality crystals.

Refinement

Crystal data, data collection, and structure refinement details are summarized in Table 3 ▸. All carbon-bound H atoms were positioned geometrically and refined as riding, with C—H = 0.95 or 0.98 Å and U iso(H) = 1.2U eq(C) or 1.5U eq(methyl C). In order to ensure a chemically meaningful O—H distance in (I), this was restrained to a target value of 0.84 (2) Å and U iso(H) = 1.5U eq(O). In (I), the amino H atoms were located in a difference-Fourier map. In (II), the N—H distances were restrained to a target value of 0.84 (2) Å and U iso(H) = 1.5U eq(N). The absolute structure of (II) was indeterminate based on the present refinement.
Table 3

Experimental details

 (I)(II)
Crystal data
Chemical formulaC11H11N3O3 C10H10N2O2
M r 233.23190.20
Crystal system, space groupMonoclinic, P21/n Orthorhombic, P212121
Temperature (K)170170
a, b, c (Å)3.9608 (4), 24.104 (3), 11.1762 (10)7.6496 (11), 8.7565 (15), 14.128 (2)
α, β, γ (°)90, 90.189 (9), 9090, 90, 90
V3)1067.0 (2)946.4 (3)
Z 44
Radiation typeMo KαMo Kα
μ (mm−1)0.110.10
Crystal size (mm)0.5 × 0.2 × 0.20.4 × 0.2 × 0.2
 
Data collection
DiffractometerRigaku XtaLAB miniRigaku XtaLAB mini
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2018)Multi-scan (CrysAlis PRO; Rigaku OD, 2018)
T min, T max 0.975, 1.0000.757, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections8175, 2937, 16676912, 2635, 1344
R int 0.0320.050
(sin θ/λ)max−1)0.6940.694
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.049, 0.155, 1.030.052, 0.168, 1.02
No. of reflections29372635
No. of parameters168137
No. of restraints12
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.16, −0.190.17, −0.16
Absolute structureFlack x determined using 385 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter−0.7 (10)

Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL2018/1 (Sheldrick, 2015b ▸), and OLEX2 (Dolomanov et al., 2009 ▸).

Crystal structure: contains datablock(s) I, II. DOI: 10.1107/S2056989022001827/hb8013sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022001827/hb8013Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989022001827/hb8013IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022001827/hb8013Isup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022001827/hb8013IIsup5.cml Shape-index and fingerprint plots for compounds (I) and (II). DOI: 10.1107/S2056989022001827/hb8013sup6.pdf CCDC references: 2152583, 2152582 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H11N3O3F(000) = 488
Mr = 233.23Dx = 1.452 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 3.9608 (4) ÅCell parameters from 1271 reflections
b = 24.104 (3) Åθ = 2.0–23.7°
c = 11.1762 (10) ŵ = 0.11 mm1
β = 90.189 (9)°T = 170 K
V = 1067.0 (2) Å3Block, clear colourless
Z = 40.5 × 0.2 × 0.2 mm
Rigaku XtaLAB mini diffractometer2937 independent reflections
Radiation source: Sealed Tube, Rigaku (Mo) X-ray Source1667 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.032
Detector resolution: 13.6612 pixels mm-1θmax = 29.6°, θmin = 2.0°
profile data from ω–scansh = −5→5
Absorption correction: multi-scan (CrysalisPro; Rigaku OD, 2018)k = −33→33
Tmin = 0.975, Tmax = 1.000l = −15→14
8175 measured reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.049w = 1/[σ2(Fo2) + (0.060P)2 + 0.1763P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.155(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.16 e Å3
2937 reflectionsΔρmin = −0.19 e Å3
168 parametersExtinction correction: SHELXL2018/1 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.017 (3)
Primary atom site location: dual
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.3397 (4)0.03421 (7)0.62727 (13)0.0697 (5)
H10.370 (8)0.0005 (8)0.594 (2)0.113 (11)*
C10.2875 (5)0.14586 (10)0.72321 (18)0.0595 (5)
H1A0.2085840.1203320.7815200.071*
N10.4218 (4)0.22042 (7)0.63223 (12)0.0495 (4)
C20.4182 (5)0.12959 (8)0.61090 (17)0.0519 (5)
O20.5820 (4)0.06706 (6)0.46040 (12)0.0648 (4)
N20.2864 (5)0.19977 (8)0.73857 (14)0.0608 (5)
O30.5775 (4)0.44729 (6)0.57003 (13)0.0699 (5)
C30.5066 (4)0.17936 (8)0.55617 (15)0.0463 (4)
N30.6542 (5)0.18839 (9)0.44896 (14)0.0573 (5)
H3A0.704 (5)0.1581 (9)0.4099 (19)0.060 (6)*
H3B0.692 (6)0.2227 (10)0.422 (2)0.070 (7)*
C40.4535 (5)0.07533 (9)0.56133 (17)0.0545 (5)
C50.4620 (4)0.27870 (8)0.61733 (15)0.0462 (4)
C60.3325 (5)0.30549 (8)0.51751 (15)0.0495 (5)
H60.2158300.2850180.4576480.059*
C70.3738 (5)0.36188 (9)0.50557 (16)0.0522 (5)
H70.2858590.3803020.4370910.063*
C80.5434 (5)0.39210 (8)0.59310 (16)0.0504 (5)
C90.6654 (5)0.36518 (8)0.69428 (16)0.0524 (5)
H90.7741430.3857040.7558920.063*
C100.6278 (5)0.30858 (8)0.70480 (15)0.0505 (5)
H100.7168710.2899720.7728720.061*
C110.7499 (6)0.48080 (10)0.6567 (2)0.0770 (7)
H11A0.9792120.4665150.6686200.115*
H11B0.6273910.4796130.7327050.115*
H11C0.7610200.5191800.6280810.115*
U11U22U33U12U13U23
O10.0905 (12)0.0604 (10)0.0584 (9)−0.0021 (9)0.0143 (8)0.0150 (7)
C10.0614 (12)0.0677 (14)0.0495 (11)−0.0015 (10)0.0083 (9)0.0107 (9)
N10.0505 (9)0.0608 (10)0.0373 (8)−0.0023 (7)0.0036 (7)0.0019 (6)
C20.0491 (11)0.0609 (12)0.0457 (10)−0.0016 (9)−0.0010 (8)0.0053 (8)
O20.0815 (11)0.0609 (9)0.0521 (8)−0.0018 (7)0.0098 (7)0.0048 (6)
N20.0691 (11)0.0708 (12)0.0427 (8)−0.0016 (9)0.0140 (8)0.0069 (7)
O30.0846 (11)0.0573 (9)0.0678 (9)−0.0025 (8)−0.0131 (8)−0.0037 (7)
C30.0403 (9)0.0623 (12)0.0362 (8)−0.0017 (8)−0.0026 (7)0.0013 (8)
N30.0731 (12)0.0585 (11)0.0402 (9)−0.0022 (9)0.0104 (8)0.0009 (8)
C40.0528 (11)0.0610 (13)0.0495 (11)0.0002 (9)−0.0029 (9)0.0104 (9)
C50.0404 (9)0.0593 (11)0.0390 (9)−0.0021 (8)0.0038 (7)−0.0005 (7)
C60.0468 (10)0.0638 (12)0.0379 (9)−0.0034 (9)−0.0023 (8)−0.0026 (8)
C70.0511 (11)0.0647 (13)0.0409 (9)0.0033 (9)−0.0025 (8)0.0011 (8)
C80.0480 (10)0.0576 (12)0.0455 (10)0.0026 (8)0.0030 (8)−0.0053 (8)
C90.0495 (11)0.0664 (13)0.0413 (9)0.0001 (9)−0.0026 (8)−0.0091 (8)
C100.0483 (10)0.0669 (13)0.0364 (9)0.0025 (9)−0.0014 (8)−0.0024 (8)
C110.0820 (16)0.0637 (14)0.0852 (16)−0.0024 (12)−0.0122 (13)−0.0173 (12)
O1—H10.901 (17)N3—H3B0.90 (2)
O1—C41.316 (2)C5—C61.386 (2)
C1—H1A0.9500C5—C101.379 (2)
C1—C21.415 (3)C6—H60.9500
C1—N21.311 (3)C6—C71.376 (3)
N1—N21.397 (2)C7—H70.9500
N1—C31.348 (2)C7—C81.391 (3)
N1—C51.424 (2)C8—C91.389 (3)
C2—C31.392 (3)C9—H90.9500
C2—C41.427 (3)C9—C101.378 (3)
O2—C41.255 (2)C10—H100.9500
O3—C81.362 (2)C11—H11A0.9800
O3—C111.433 (3)C11—H11B0.9800
C3—N31.353 (2)C11—H11C0.9800
N3—H3A0.87 (2)
C4—O1—H1113.6 (19)C10—C5—C6120.09 (19)
C2—C1—H1A123.4C5—C6—H6120.2
N2—C1—H1A123.4C7—C6—C5119.65 (17)
N2—C1—C2113.11 (18)C7—C6—H6120.2
N2—N1—C5119.63 (15)C6—C7—H7119.8
C3—N1—N2111.84 (16)C6—C7—C8120.44 (18)
C3—N1—C5128.51 (15)C8—C7—H7119.8
C1—C2—C4129.42 (19)O3—C8—C7115.24 (17)
C3—C2—C1104.13 (18)O3—C8—C9125.16 (17)
C3—C2—C4126.45 (18)C9—C8—C7119.60 (19)
C1—N2—N1103.90 (16)C8—C9—H9120.2
C8—O3—C11118.03 (17)C10—C9—C8119.65 (17)
N1—C3—C2106.99 (16)C10—C9—H9120.2
N1—C3—N3123.35 (18)C5—C10—H10119.7
N3—C3—C2129.65 (19)C9—C10—C5120.54 (17)
C3—N3—H3A114.1 (14)C9—C10—H10119.7
C3—N3—H3B121.7 (15)O3—C11—H11A109.5
H3A—N3—H3B124 (2)O3—C11—H11B109.5
O1—C4—C2116.02 (18)O3—C11—H11C109.5
O2—C4—O1121.64 (19)H11A—C11—H11B109.5
O2—C4—C2122.34 (18)H11A—C11—H11C109.5
C6—C5—N1120.85 (16)H11B—C11—H11C109.5
C10—C5—N1119.05 (16)
C1—C2—C3—N1−1.5 (2)C3—C2—C4—O1−177.21 (18)
C1—C2—C3—N3177.56 (19)C3—C2—C4—O22.1 (3)
C1—C2—C4—O12.3 (3)C4—C2—C3—N1178.11 (18)
C1—C2—C4—O2−178.46 (19)C4—C2—C3—N3−2.9 (3)
N1—C5—C6—C7179.75 (16)C5—N1—N2—C1−179.45 (17)
N1—C5—C10—C9−178.75 (16)C5—N1—C3—C2179.87 (16)
C2—C1—N2—N10.0 (2)C5—N1—C3—N30.8 (3)
N2—C1—C2—C30.9 (2)C5—C6—C7—C8−0.2 (3)
N2—C1—C2—C4−178.6 (2)C6—C5—C10—C90.3 (3)
N2—N1—C3—C21.6 (2)C6—C7—C8—O3178.16 (17)
N2—N1—C3—N3−177.50 (17)C6—C7—C8—C9−1.3 (3)
N2—N1—C5—C6−127.58 (18)C7—C8—C9—C102.3 (3)
N2—N1—C5—C1051.4 (2)C8—C9—C10—C5−1.8 (3)
O3—C8—C9—C10−177.11 (18)C10—C5—C6—C70.8 (3)
C3—N1—N2—C1−1.0 (2)C11—O3—C8—C7180.00 (19)
C3—N1—C5—C654.3 (3)C11—O3—C8—C9−0.5 (3)
C3—N1—C5—C10−126.71 (19)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O20.87 (2)2.32 (2)2.941 (3)128.5 (18)
O1—H1···O2i0.90 (2)1.75 (2)2.649 (2)176 (3)
C10H10N2O2Dx = 1.335 Mg m3
Mr = 190.20Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 1405 reflections
a = 7.6496 (11) Åθ = 2.7–22.5°
b = 8.7565 (15) ŵ = 0.10 mm1
c = 14.128 (2) ÅT = 170 K
V = 946.4 (3) Å3Block, clear colourless
Z = 40.4 × 0.2 × 0.2 mm
F(000) = 400
Rigaku XtaLAB mini diffractometer2635 independent reflections
Radiation source: fine-focus sealed X-ray tube, Rigaku (Mo) X-ray Source1344 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.050
Detector resolution: 13.6612 pixels mm-1θmax = 29.6°, θmin = 2.7°
profile data from ω–scansh = −10→9
Absorption correction: multi-scan (CrysalisPro; Rigaku OD, 2018)k = −11→11
Tmin = 0.757, Tmax = 1.000l = −11→19
6912 measured reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0606P)2] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.052(Δ/σ)max < 0.001
wR(F2) = 0.168Δρmax = 0.17 e Å3
S = 1.02Δρmin = −0.16 e Å3
2635 reflectionsExtinction correction: SHELXL2018/1 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
137 parametersExtinction coefficient: 0.037 (7)
2 restraintsAbsolute structure: Flack x determined using 385 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: dualAbsolute structure parameter: −0.7 (10)
Hydrogen site location: mixed
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.5261 (3)0.8179 (3)0.69875 (17)0.0617 (7)
C10.5966 (4)0.6690 (4)0.5813 (2)0.0523 (8)
N10.4969 (4)0.6710 (4)0.6566 (2)0.0632 (8)
O20.6029 (4)0.1662 (3)0.33196 (17)0.0736 (8)
N20.6808 (5)1.0370 (5)0.6730 (3)0.0718 (10)
C20.6906 (5)0.8049 (4)0.5699 (3)0.0615 (10)
H20.7708030.8296160.5209340.074*
C30.6421 (5)0.8938 (4)0.6445 (2)0.0578 (9)
C40.5977 (4)0.5345 (4)0.5186 (2)0.0516 (8)
C50.5115 (5)0.4010 (4)0.5422 (2)0.0588 (9)
H50.4526530.3951030.6013050.071*
C60.5081 (5)0.2752 (5)0.4821 (2)0.0613 (10)
H60.4465750.1853650.4996730.074*
C70.5963 (5)0.2827 (5)0.3959 (3)0.0592 (10)
C80.6848 (5)0.4147 (5)0.3719 (2)0.0629 (10)
H80.7465540.4199480.3136700.076*
C90.6843 (5)0.5390 (5)0.4321 (2)0.0606 (10)
H90.7442600.6294300.4140440.073*
C100.5103 (6)0.0287 (5)0.3529 (3)0.0887 (14)
H10A0.533820−0.0472110.3035180.133*
H10B0.3846400.0499240.3553050.133*
H10C0.549038−0.0111380.4142540.133*
H2A0.635 (9)1.074 (6)0.726 (3)0.17 (3)*
H2B0.753 (5)1.087 (5)0.640 (3)0.090 (17)*
U11U22U33U12U13U23
O10.0673 (15)0.0646 (17)0.0531 (13)−0.0011 (14)0.0098 (11)0.0035 (12)
C10.0433 (16)0.065 (2)0.0489 (17)0.0065 (18)0.0021 (14)0.0079 (16)
N10.071 (2)0.064 (2)0.0551 (16)−0.0038 (18)0.0105 (15)−0.0017 (15)
O20.0721 (17)0.089 (2)0.0600 (15)−0.0106 (18)0.0091 (13)−0.0176 (14)
N20.080 (3)0.065 (2)0.071 (2)−0.0054 (19)0.0106 (19)−0.0007 (18)
C20.056 (2)0.070 (3)0.058 (2)−0.001 (2)0.0137 (17)0.0019 (19)
C30.056 (2)0.063 (2)0.0545 (19)0.0013 (18)−0.0014 (16)0.0057 (18)
C40.0453 (17)0.062 (2)0.0477 (15)0.0034 (17)0.0009 (15)0.0059 (15)
C50.057 (2)0.070 (2)0.0493 (18)0.0015 (19)0.0071 (16)0.0024 (17)
C60.055 (2)0.075 (2)0.0539 (19)−0.0026 (19)0.0072 (18)−0.0003 (18)
C70.0492 (18)0.077 (3)0.0512 (18)0.0034 (19)−0.0005 (17)−0.0031 (17)
C80.055 (2)0.083 (3)0.0502 (19)0.001 (2)0.0097 (16)0.0034 (19)
C90.056 (2)0.073 (2)0.0527 (19)−0.001 (2)0.0068 (16)0.0096 (18)
C100.093 (3)0.092 (3)0.080 (3)−0.019 (3)0.015 (3)−0.020 (3)
O1—N11.434 (4)C4—C91.390 (5)
O1—C31.348 (4)C5—H50.9500
C1—N11.310 (4)C5—C61.391 (5)
C1—C21.399 (5)C6—H60.9500
C1—C41.474 (5)C6—C71.394 (5)
O2—C71.363 (5)C7—C81.382 (6)
O2—C101.429 (5)C8—H80.9500
N2—C31.350 (5)C8—C91.381 (5)
N2—H2A0.89 (3)C9—H90.9500
N2—H2B0.85 (2)C10—H10A0.9800
C2—H20.9500C10—H10B0.9800
C2—C31.362 (5)C10—H10C0.9800
C4—C51.383 (5)
C3—O1—N1108.0 (3)C6—C5—H5119.0
N1—C1—C2112.4 (3)C5—C6—H6120.4
N1—C1—C4120.2 (3)C5—C6—C7119.2 (4)
C2—C1—C4127.4 (3)C7—C6—H6120.4
C1—N1—O1105.0 (3)O2—C7—C6124.2 (4)
C7—O2—C10118.4 (3)O2—C7—C8116.4 (3)
C3—N2—H2A120 (4)C8—C7—C6119.3 (4)
C3—N2—H2B117 (3)C7—C8—H8119.8
H2A—N2—H2B122 (5)C9—C8—C7120.5 (3)
C1—C2—H2127.5C9—C8—H8119.8
C3—C2—C1104.9 (3)C4—C9—H9119.3
C3—C2—H2127.5C8—C9—C4121.3 (4)
O1—C3—N2115.7 (3)C8—C9—H9119.3
O1—C3—C2109.7 (3)O2—C10—H10A109.5
N2—C3—C2134.6 (4)O2—C10—H10B109.5
C5—C4—C1121.8 (3)O2—C10—H10C109.5
C5—C4—C9117.6 (3)H10A—C10—H10B109.5
C9—C4—C1120.5 (3)H10A—C10—H10C109.5
C4—C5—H5119.0H10B—C10—H10C109.5
C4—C5—C6122.1 (3)
C1—C2—C3—O10.2 (4)C3—O1—N1—C10.2 (4)
C1—C2—C3—N2−178.0 (4)C4—C1—N1—O1−178.9 (3)
C1—C4—C5—C6178.2 (3)C4—C1—C2—C3178.6 (3)
C1—C4—C9—C8−179.2 (3)C4—C5—C6—C70.9 (6)
N1—O1—C3—N2178.3 (3)C5—C4—C9—C8−0.2 (5)
N1—O1—C3—C2−0.3 (4)C5—C6—C7—O2179.5 (4)
N1—C1—C2—C3−0.1 (4)C5—C6—C7—C80.0 (5)
N1—C1—C4—C5−7.7 (5)C6—C7—C8—C9−0.9 (6)
N1—C1—C4—C9171.3 (3)C7—C8—C9—C41.0 (6)
O2—C7—C8—C9179.5 (3)C9—C4—C5—C6−0.8 (5)
C2—C1—N1—O1−0.1 (4)C10—O2—C7—C61.7 (6)
C2—C1—C4—C5173.7 (3)C10—O2—C7—C8−178.8 (4)
C2—C1—C4—C9−7.3 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.89 (3)2.12 (3)3.003 (5)174 (6)
N2—H2B···Cg2ii0.85 (2)2.97 (4)3.709 (4)147 (4)
  16 in total

1.  Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces.

Authors:  Joshua J McKinnon; Dylan Jayatilaka; Mark A Spackman
Journal:  Chem Commun (Camb)       Date:  2007-10-07       Impact factor: 6.222

2.  3-Aminopyrazine-2-carboxylic acid.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1996-06-15       Impact factor: 1.172

3.  Iterative Assembly of Nitrile Oxides and Ynamides: Synthesis of Isoxazoles and Pyrroles.

Authors:  Changwei Chen; Sunliang Cui
Journal:  J Org Chem       Date:  2019-08-28       Impact factor: 4.354

4.  5-Amino-1-phenyl-3-trifluoro-methyl-1H-pyrazole-4-carboxylic acid.

Authors:  Francesco Caruso; Maria Valeria Raimondi; Giuseppe Daidone; Claudio Pettinari; Miriam Rossi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

5.  Ethyl 5-amino-1-(4-chloro-2-nitro-phen-yl)-1H-pyrazole-4-carboxyl-ate.

Authors:  Muhammad Zia-Ur-Rehman; Mark R J Elsegood; Jamil Anwar Choudary; Muhammad Fasih Ullah; Hamid Latif Siddiqui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

6.  5-aminoisophthalic acid hemihydrate.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1998-10-15       Impact factor: 1.172

7.  Isatin-pyrazole benzenesulfonamide hybrids potently inhibit tumor-associated carbonic anhydrase isoforms IX and XII.

Authors:  Hany S Ibrahim; Sahar M Abou-Seri; Muhammet Tanc; Mahmoud M Elaasser; Hatem A Abdel-Aziz; Claudiu T Supuran
Journal:  Eur J Med Chem       Date:  2015-09-16       Impact factor: 6.514

8.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

10.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.