Literature DB >> 21579239

N'-Acetyl-5-amino-1-methyl-1H-pyrazole-4-carbohydrazonamide dihydrate.

Anna V Dolzhenko, Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Giorgia Pastorin.   

Abstract

In the title compound, C(7)H(12)N(6)O·2H(2)O, the Z configuration of the hydrazone fragment is stabilized by an intra-molecular N-H⋯N hydrogen bond involving one of the amino groups. In the crystal structure, the hydrazonamide mol-ecules are connected via inter-molecular N-H⋯O=C hydrogen bonds, forming C(7) chains running along [010]. The chains form sheets parallel to the (01). The chains are cross-linked by water mol-ecules to form a three-dimensional hydrogen-bonded network.

Entities:  

Year:  2010        PMID: 21579239      PMCID: PMC2979283          DOI: 10.1107/S1600536810015357

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bioactive pyrazoles, see: Elguero et al. (2002 ▶); Lamberth (2007 ▶). For the use of pyrazoles as synthons in heterocyclic chemistry, see: Schenone et al. (2007 ▶); Dolzhenko et al. (2008 ▶). For the use of pyrazoles in metal-organic chemistry, see: Mukherjee (2000 ▶); Halcrow (2009 ▶). For the crystal structures of related 5-amino-1H-pyrazole-4-carboxylic acid derivatives, see: Zia-ur-Rehman et al. (2008 ▶, 2009 ▶); Caruso et al. (2009 ▶). For the crystal structure of N′-acetyl-2-phenyl­ethane­hydra­zo­namide, see: Ianelli et al. (2001 ▶). For the graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C7H12N6O·2H2O M = 232.26 Triclinic, a = 7.5496 (9) Å b = 7.6208 (9) Å c = 11.2518 (13) Å α = 102.645 (2)° β = 101.440 (2)° γ = 110.810 (2)° V = 562.75 (11) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 223 K 0.45 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.953, T max = 0.989 3963 measured reflections 2548 independent reflections 2174 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.141 S = 1.05 2548 reflections 183 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810015357/ci5086sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015357/ci5086Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H12N6O·2H2OZ = 2
Mr = 232.26F(000) = 248
Triclinic, P1Dx = 1.371 Mg m3
Hall symbol: -P 1Melting point: 513 K
a = 7.5496 (9) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.6208 (9) ÅCell parameters from 1515 reflections
c = 11.2518 (13) Åθ = 3.0–27.5°
α = 102.645 (2)°µ = 0.11 mm1
β = 101.440 (2)°T = 223 K
γ = 110.810 (2)°Rod, colourless
V = 562.75 (11) Å30.45 × 0.12 × 0.10 mm
Bruker SMART APEX CCD diffractometer2548 independent reflections
Radiation source: fine-focus sealed tube2174 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −9→9
Tmin = 0.953, Tmax = 0.989k = −9→9
3963 measured reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0711P)2 + 0.1961P] where P = (Fo2 + 2Fc2)/3
2548 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3615 (2)0.89463 (19)0.14623 (12)0.0421 (4)
N10.7337 (2)0.3950 (2)0.48625 (14)0.0306 (4)
N20.7791 (2)0.5933 (2)0.51428 (13)0.0264 (3)
N30.7066 (3)0.8221 (2)0.42298 (16)0.0302 (4)
H310.748 (3)0.907 (3)0.495 (2)0.036 (6)*
H320.613 (3)0.821 (3)0.365 (2)0.039 (6)*
N40.3308 (2)0.2471 (2)0.11287 (15)0.0297 (4)
H410.350 (3)0.158 (3)0.132 (2)0.032 (5)*
H420.260 (3)0.223 (3)0.034 (2)0.040 (6)*
N50.4378 (2)0.5945 (2)0.18078 (13)0.0294 (4)
N60.3198 (2)0.5816 (2)0.06398 (13)0.0267 (3)
H6N0.269 (3)0.479 (3)0.000 (2)0.037 (6)*
C10.6808 (2)0.6344 (2)0.41838 (15)0.0239 (4)
C20.5664 (2)0.4541 (2)0.32050 (15)0.0236 (4)
C30.6068 (3)0.3143 (3)0.37018 (16)0.0272 (4)
H30.54960.17800.32560.033*
C40.9204 (3)0.7328 (3)0.63443 (17)0.0359 (4)
H4A1.01400.84430.61880.054*
H4C0.99160.66870.67660.054*
H4D0.85040.77910.68860.054*
C50.4374 (2)0.4304 (2)0.19753 (15)0.0225 (3)
C60.2965 (3)0.7431 (3)0.05365 (16)0.0278 (4)
C70.1873 (3)0.7318 (3)−0.07661 (17)0.0354 (4)
H7A0.07290.7603−0.07210.053*
H7B0.14310.6000−0.13530.053*
H7C0.27510.8278−0.10660.053*
O1W0.8443 (2)0.7733 (2)0.15574 (13)0.0380 (4)
H1W0.752 (5)0.757 (4)0.186 (3)0.069 (9)*
H2W0.949 (5)0.780 (4)0.213 (3)0.065 (8)*
O2W0.1806 (2)0.8169 (2)0.34309 (14)0.0393 (4)
H3W0.253 (4)0.812 (4)0.294 (3)0.064 (9)*
H4W0.189 (4)0.731 (4)0.381 (3)0.060 (8)*
U11U22U33U12U13U23
O10.0739 (10)0.0235 (7)0.0262 (7)0.0259 (7)0.0028 (7)0.0046 (5)
N10.0382 (8)0.0292 (8)0.0260 (8)0.0170 (7)0.0052 (6)0.0107 (6)
N20.0311 (7)0.0255 (7)0.0195 (7)0.0118 (6)0.0023 (6)0.0060 (6)
N30.0413 (9)0.0219 (7)0.0218 (8)0.0130 (7)0.0021 (7)0.0032 (6)
N40.0436 (9)0.0173 (7)0.0228 (8)0.0136 (6)−0.0018 (6)0.0053 (6)
N50.0403 (8)0.0219 (7)0.0197 (7)0.0141 (6)−0.0034 (6)0.0043 (6)
N60.0375 (8)0.0195 (7)0.0174 (7)0.0128 (6)−0.0022 (6)0.0029 (6)
C10.0268 (8)0.0265 (8)0.0186 (7)0.0119 (7)0.0058 (6)0.0071 (6)
C20.0286 (8)0.0225 (8)0.0199 (8)0.0119 (6)0.0046 (6)0.0072 (6)
C30.0342 (9)0.0228 (8)0.0241 (8)0.0138 (7)0.0037 (7)0.0076 (6)
C40.0374 (10)0.0406 (11)0.0206 (8)0.0142 (8)−0.0003 (7)0.0043 (8)
C50.0274 (8)0.0211 (8)0.0188 (7)0.0114 (6)0.0045 (6)0.0061 (6)
C60.0353 (9)0.0264 (8)0.0217 (8)0.0143 (7)0.0048 (7)0.0085 (7)
C70.0447 (11)0.0370 (10)0.0273 (9)0.0227 (9)0.0026 (8)0.0136 (8)
O1W0.0406 (8)0.0395 (8)0.0236 (7)0.0125 (6)0.0021 (6)0.0044 (6)
O2W0.0518 (9)0.0414 (8)0.0299 (7)0.0253 (7)0.0082 (7)0.0145 (6)
O1—C61.236 (2)C1—C21.401 (2)
N1—C31.317 (2)C2—C31.402 (2)
N1—N21.372 (2)C2—C51.459 (2)
N2—C11.344 (2)C3—H30.94
N2—C41.445 (2)C4—H4A0.97
N3—C11.362 (2)C4—H4C0.97
N3—H310.83 (2)C4—H4D0.97
N3—H320.86 (2)C6—C71.500 (2)
N4—C51.350 (2)C7—H7A0.97
N4—H410.81 (2)C7—H7B0.97
N4—H420.88 (2)C7—H7C0.97
N5—C51.303 (2)O1W—H1W0.81 (3)
N5—N61.3953 (19)O1W—H2W0.89 (3)
N6—C61.330 (2)O2W—H3W0.86 (3)
N6—H6N0.84 (2)O2W—H4W0.87 (3)
C3—N1—N2104.63 (14)C2—C3—H3123.7
C1—N2—N1112.10 (14)N2—C4—H4A109.5
C1—N2—C4127.04 (15)N2—C4—H4C109.5
N1—N2—C4120.85 (14)H4A—C4—H4C109.5
C1—N3—H31117.5 (15)N2—C4—H4D109.5
C1—N3—H32110.8 (16)H4A—C4—H4D109.5
H31—N3—H32119 (2)H4C—C4—H4D109.5
C5—N4—H41116.7 (15)N5—C5—N4126.14 (15)
C5—N4—H42123.9 (15)N5—C5—C2114.92 (14)
H41—N4—H42118 (2)N4—C5—C2118.95 (15)
C5—N5—N6117.52 (14)O1—C6—N6121.90 (15)
C6—N6—N5117.50 (14)O1—C6—C7121.68 (16)
C6—N6—H6N119.6 (15)N6—C6—C7116.42 (15)
N5—N6—H6N122.8 (15)C6—C7—H7A109.5
N2—C1—N3122.61 (15)C6—C7—H7B109.5
N2—C1—C2106.59 (14)H7A—C7—H7B109.5
N3—C1—C2130.72 (15)C6—C7—H7C109.5
C1—C2—C3104.15 (14)H7A—C7—H7C109.5
C1—C2—C5125.02 (15)H7B—C7—H7C109.5
C3—C2—C5130.83 (15)H1W—O1W—H2W110 (3)
N1—C3—C2112.53 (15)H3W—O2W—H4W103 (3)
N1—C3—H3123.7
C3—N1—N2—C10.66 (19)N2—N1—C3—C2−0.1 (2)
C3—N1—N2—C4−178.36 (16)C1—C2—C3—N1−0.5 (2)
C5—N5—N6—C6170.14 (16)C5—C2—C3—N1179.83 (17)
N1—N2—C1—N3−177.99 (15)N6—N5—C5—N4−1.0 (3)
C4—N2—C1—N31.0 (3)N6—N5—C5—C2178.89 (14)
N1—N2—C1—C2−0.95 (19)C1—C2—C5—N51.9 (2)
C4—N2—C1—C2178.00 (16)C3—C2—C5—N5−178.43 (17)
N2—C1—C2—C30.82 (18)C1—C2—C5—N4−178.18 (16)
N3—C1—C2—C3177.53 (18)C3—C2—C5—N41.5 (3)
N2—C1—C2—C5−179.44 (15)N5—N6—C6—O1−6.2 (3)
N3—C1—C2—C5−2.7 (3)N5—N6—C6—C7173.75 (16)
D—H···AD—HH···AD···AD—H···A
O2W—H4W···N1i0.87 (3)2.04 (3)2.884 (2)162 (3)
O2W—H3W···O10.86 (3)2.11 (3)2.885 (2)150 (3)
O1W—H2W···O2Wii0.89 (3)1.93 (3)2.824 (2)175 (3)
O1W—H1W···N50.81 (3)2.24 (3)2.982 (2)153 (3)
N6—H6N···O1Wiii0.84 (2)2.07 (2)2.905 (2)177 (2)
N4—H42···O1Wiii0.88 (2)2.14 (3)2.995 (2)165 (2)
N4—H41···O1iv0.81 (2)2.08 (2)2.874 (2)169 (2)
N3—H32···N50.86 (2)2.18 (2)2.791 (2)128 (2)
N3—H31···O2Wv0.83 (2)2.27 (2)3.082 (2)163 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H4W⋯N1i0.87 (3)2.04 (3)2.884 (2)162 (3)
O2W—H3W⋯O10.86 (3)2.11 (3)2.885 (2)150 (3)
O1W—H2W⋯O2Wii0.89 (3)1.93 (3)2.824 (2)175 (3)
O1W—H1W⋯N50.81 (3)2.24 (3)2.982 (2)153 (3)
N6—H6N⋯O1Wiii0.84 (2)2.07 (2)2.905 (2)177 (2)
N4—H42⋯O1Wiii0.88 (2)2.14 (3)2.995 (2)165 (2)
N4—H41⋯O1iv0.81 (2)2.08 (2)2.874 (2)169 (2)
N3—H32⋯N50.86 (2)2.18 (2)2.791 (2)128 (2)
N3—H31⋯O2Wv0.83 (2)2.27 (2)3.082 (2)163 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Francesco Caruso; Maria Valeria Raimondi; Giuseppe Daidone; Claudio Pettinari; Miriam Rossi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

3.  Ethyl 5-amino-1-(4-chloro-2-nitro-phen-yl)-1H-pyrazole-4-carboxyl-ate.

Authors:  Muhammad Zia-Ur-Rehman; Mark R J Elsegood; Jamil Anwar Choudary; Muhammad Fasih Ullah; Hamid Latif Siddiqui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

4.  Pyrazoles and pyrazolides-flexible synthons in self-assembly.

Authors:  Malcolm A Halcrow
Journal:  Dalton Trans       Date:  2009-01-23       Impact factor: 4.390

5.  5-Amino-1-phenyl-1H-pyrazole-4-carboxylic acid.

Authors:  Muhammad Zia-Ur-Rehman; Mark R J Elsegood; Nosheen Akbar; Rahman Shah Zaib Saleem
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-21
  5 in total

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