| Literature DB >> 21579239 |
Anna V Dolzhenko, Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Giorgia Pastorin.
Abstract
In the title compound, C(7)H(12)N(6)O·2H(2)O, the Z configuration of the hydrazone fragment is stabilized by an intra-molecular N-H⋯N hydrogen bond involving one of the amino groups. In the crystal structure, the hydrazonamide mol-ecules are connected via inter-molecular N-H⋯O=C hydrogen bonds, forming C(7) chains running along [010]. The chains form sheets parallel to the (01). The chains are cross-linked by water mol-ecules to form a three-dimensional hydrogen-bonded network.Entities:
Year: 2010 PMID: 21579239 PMCID: PMC2979283 DOI: 10.1107/S1600536810015357
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H12N6O·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 513 K |
| Mo | |
| Cell parameters from 1515 reflections | |
| θ = 3.0–27.5° | |
| α = 102.645 (2)° | µ = 0.11 mm−1 |
| β = 101.440 (2)° | |
| γ = 110.810 (2)° | Rod, colourless |
| 0.45 × 0.12 × 0.10 mm |
| Bruker SMART APEX CCD diffractometer | 2548 independent reflections |
| Radiation source: fine-focus sealed tube | 2174 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 3963 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2548 reflections | (Δ/σ)max = 0.001 |
| 183 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.3615 (2) | 0.89463 (19) | 0.14623 (12) | 0.0421 (4) | |
| N1 | 0.7337 (2) | 0.3950 (2) | 0.48625 (14) | 0.0306 (4) | |
| N2 | 0.7791 (2) | 0.5933 (2) | 0.51428 (13) | 0.0264 (3) | |
| N3 | 0.7066 (3) | 0.8221 (2) | 0.42298 (16) | 0.0302 (4) | |
| H31 | 0.748 (3) | 0.907 (3) | 0.495 (2) | 0.036 (6)* | |
| H32 | 0.613 (3) | 0.821 (3) | 0.365 (2) | 0.039 (6)* | |
| N4 | 0.3308 (2) | 0.2471 (2) | 0.11287 (15) | 0.0297 (4) | |
| H41 | 0.350 (3) | 0.158 (3) | 0.132 (2) | 0.032 (5)* | |
| H42 | 0.260 (3) | 0.223 (3) | 0.034 (2) | 0.040 (6)* | |
| N5 | 0.4378 (2) | 0.5945 (2) | 0.18078 (13) | 0.0294 (4) | |
| N6 | 0.3198 (2) | 0.5816 (2) | 0.06398 (13) | 0.0267 (3) | |
| H6N | 0.269 (3) | 0.479 (3) | 0.000 (2) | 0.037 (6)* | |
| C1 | 0.6808 (2) | 0.6344 (2) | 0.41838 (15) | 0.0239 (4) | |
| C2 | 0.5664 (2) | 0.4541 (2) | 0.32050 (15) | 0.0236 (4) | |
| C3 | 0.6068 (3) | 0.3143 (3) | 0.37018 (16) | 0.0272 (4) | |
| H3 | 0.5496 | 0.1780 | 0.3256 | 0.033* | |
| C4 | 0.9204 (3) | 0.7328 (3) | 0.63443 (17) | 0.0359 (4) | |
| H4A | 1.0140 | 0.8443 | 0.6188 | 0.054* | |
| H4C | 0.9916 | 0.6687 | 0.6766 | 0.054* | |
| H4D | 0.8504 | 0.7791 | 0.6886 | 0.054* | |
| C5 | 0.4374 (2) | 0.4304 (2) | 0.19753 (15) | 0.0225 (3) | |
| C6 | 0.2965 (3) | 0.7431 (3) | 0.05365 (16) | 0.0278 (4) | |
| C7 | 0.1873 (3) | 0.7318 (3) | −0.07661 (17) | 0.0354 (4) | |
| H7A | 0.0729 | 0.7603 | −0.0721 | 0.053* | |
| H7B | 0.1431 | 0.6000 | −0.1353 | 0.053* | |
| H7C | 0.2751 | 0.8278 | −0.1066 | 0.053* | |
| O1W | 0.8443 (2) | 0.7733 (2) | 0.15574 (13) | 0.0380 (4) | |
| H1W | 0.752 (5) | 0.757 (4) | 0.186 (3) | 0.069 (9)* | |
| H2W | 0.949 (5) | 0.780 (4) | 0.213 (3) | 0.065 (8)* | |
| O2W | 0.1806 (2) | 0.8169 (2) | 0.34309 (14) | 0.0393 (4) | |
| H3W | 0.253 (4) | 0.812 (4) | 0.294 (3) | 0.064 (9)* | |
| H4W | 0.189 (4) | 0.731 (4) | 0.381 (3) | 0.060 (8)* |
| O1 | 0.0739 (10) | 0.0235 (7) | 0.0262 (7) | 0.0259 (7) | 0.0028 (7) | 0.0046 (5) |
| N1 | 0.0382 (8) | 0.0292 (8) | 0.0260 (8) | 0.0170 (7) | 0.0052 (6) | 0.0107 (6) |
| N2 | 0.0311 (7) | 0.0255 (7) | 0.0195 (7) | 0.0118 (6) | 0.0023 (6) | 0.0060 (6) |
| N3 | 0.0413 (9) | 0.0219 (7) | 0.0218 (8) | 0.0130 (7) | 0.0021 (7) | 0.0032 (6) |
| N4 | 0.0436 (9) | 0.0173 (7) | 0.0228 (8) | 0.0136 (6) | −0.0018 (6) | 0.0053 (6) |
| N5 | 0.0403 (8) | 0.0219 (7) | 0.0197 (7) | 0.0141 (6) | −0.0034 (6) | 0.0043 (6) |
| N6 | 0.0375 (8) | 0.0195 (7) | 0.0174 (7) | 0.0128 (6) | −0.0022 (6) | 0.0029 (6) |
| C1 | 0.0268 (8) | 0.0265 (8) | 0.0186 (7) | 0.0119 (7) | 0.0058 (6) | 0.0071 (6) |
| C2 | 0.0286 (8) | 0.0225 (8) | 0.0199 (8) | 0.0119 (6) | 0.0046 (6) | 0.0072 (6) |
| C3 | 0.0342 (9) | 0.0228 (8) | 0.0241 (8) | 0.0138 (7) | 0.0037 (7) | 0.0076 (6) |
| C4 | 0.0374 (10) | 0.0406 (11) | 0.0206 (8) | 0.0142 (8) | −0.0003 (7) | 0.0043 (8) |
| C5 | 0.0274 (8) | 0.0211 (8) | 0.0188 (7) | 0.0114 (6) | 0.0045 (6) | 0.0061 (6) |
| C6 | 0.0353 (9) | 0.0264 (8) | 0.0217 (8) | 0.0143 (7) | 0.0048 (7) | 0.0085 (7) |
| C7 | 0.0447 (11) | 0.0370 (10) | 0.0273 (9) | 0.0227 (9) | 0.0026 (8) | 0.0136 (8) |
| O1W | 0.0406 (8) | 0.0395 (8) | 0.0236 (7) | 0.0125 (6) | 0.0021 (6) | 0.0044 (6) |
| O2W | 0.0518 (9) | 0.0414 (8) | 0.0299 (7) | 0.0253 (7) | 0.0082 (7) | 0.0145 (6) |
| O1—C6 | 1.236 (2) | C1—C2 | 1.401 (2) |
| N1—C3 | 1.317 (2) | C2—C3 | 1.402 (2) |
| N1—N2 | 1.372 (2) | C2—C5 | 1.459 (2) |
| N2—C1 | 1.344 (2) | C3—H3 | 0.94 |
| N2—C4 | 1.445 (2) | C4—H4A | 0.97 |
| N3—C1 | 1.362 (2) | C4—H4C | 0.97 |
| N3—H31 | 0.83 (2) | C4—H4D | 0.97 |
| N3—H32 | 0.86 (2) | C6—C7 | 1.500 (2) |
| N4—C5 | 1.350 (2) | C7—H7A | 0.97 |
| N4—H41 | 0.81 (2) | C7—H7B | 0.97 |
| N4—H42 | 0.88 (2) | C7—H7C | 0.97 |
| N5—C5 | 1.303 (2) | O1W—H1W | 0.81 (3) |
| N5—N6 | 1.3953 (19) | O1W—H2W | 0.89 (3) |
| N6—C6 | 1.330 (2) | O2W—H3W | 0.86 (3) |
| N6—H6N | 0.84 (2) | O2W—H4W | 0.87 (3) |
| C3—N1—N2 | 104.63 (14) | C2—C3—H3 | 123.7 |
| C1—N2—N1 | 112.10 (14) | N2—C4—H4A | 109.5 |
| C1—N2—C4 | 127.04 (15) | N2—C4—H4C | 109.5 |
| N1—N2—C4 | 120.85 (14) | H4A—C4—H4C | 109.5 |
| C1—N3—H31 | 117.5 (15) | N2—C4—H4D | 109.5 |
| C1—N3—H32 | 110.8 (16) | H4A—C4—H4D | 109.5 |
| H31—N3—H32 | 119 (2) | H4C—C4—H4D | 109.5 |
| C5—N4—H41 | 116.7 (15) | N5—C5—N4 | 126.14 (15) |
| C5—N4—H42 | 123.9 (15) | N5—C5—C2 | 114.92 (14) |
| H41—N4—H42 | 118 (2) | N4—C5—C2 | 118.95 (15) |
| C5—N5—N6 | 117.52 (14) | O1—C6—N6 | 121.90 (15) |
| C6—N6—N5 | 117.50 (14) | O1—C6—C7 | 121.68 (16) |
| C6—N6—H6N | 119.6 (15) | N6—C6—C7 | 116.42 (15) |
| N5—N6—H6N | 122.8 (15) | C6—C7—H7A | 109.5 |
| N2—C1—N3 | 122.61 (15) | C6—C7—H7B | 109.5 |
| N2—C1—C2 | 106.59 (14) | H7A—C7—H7B | 109.5 |
| N3—C1—C2 | 130.72 (15) | C6—C7—H7C | 109.5 |
| C1—C2—C3 | 104.15 (14) | H7A—C7—H7C | 109.5 |
| C1—C2—C5 | 125.02 (15) | H7B—C7—H7C | 109.5 |
| C3—C2—C5 | 130.83 (15) | H1W—O1W—H2W | 110 (3) |
| N1—C3—C2 | 112.53 (15) | H3W—O2W—H4W | 103 (3) |
| N1—C3—H3 | 123.7 | ||
| C3—N1—N2—C1 | 0.66 (19) | N2—N1—C3—C2 | −0.1 (2) |
| C3—N1—N2—C4 | −178.36 (16) | C1—C2—C3—N1 | −0.5 (2) |
| C5—N5—N6—C6 | 170.14 (16) | C5—C2—C3—N1 | 179.83 (17) |
| N1—N2—C1—N3 | −177.99 (15) | N6—N5—C5—N4 | −1.0 (3) |
| C4—N2—C1—N3 | 1.0 (3) | N6—N5—C5—C2 | 178.89 (14) |
| N1—N2—C1—C2 | −0.95 (19) | C1—C2—C5—N5 | 1.9 (2) |
| C4—N2—C1—C2 | 178.00 (16) | C3—C2—C5—N5 | −178.43 (17) |
| N2—C1—C2—C3 | 0.82 (18) | C1—C2—C5—N4 | −178.18 (16) |
| N3—C1—C2—C3 | 177.53 (18) | C3—C2—C5—N4 | 1.5 (3) |
| N2—C1—C2—C5 | −179.44 (15) | N5—N6—C6—O1 | −6.2 (3) |
| N3—C1—C2—C5 | −2.7 (3) | N5—N6—C6—C7 | 173.75 (16) |
| H··· | ||||
| O2W—H4W···N1i | 0.87 (3) | 2.04 (3) | 2.884 (2) | 162 (3) |
| O2W—H3W···O1 | 0.86 (3) | 2.11 (3) | 2.885 (2) | 150 (3) |
| O1W—H2W···O2Wii | 0.89 (3) | 1.93 (3) | 2.824 (2) | 175 (3) |
| O1W—H1W···N5 | 0.81 (3) | 2.24 (3) | 2.982 (2) | 153 (3) |
| N6—H6N···O1Wiii | 0.84 (2) | 2.07 (2) | 2.905 (2) | 177 (2) |
| N4—H42···O1Wiii | 0.88 (2) | 2.14 (3) | 2.995 (2) | 165 (2) |
| N4—H41···O1iv | 0.81 (2) | 2.08 (2) | 2.874 (2) | 169 (2) |
| N3—H32···N5 | 0.86 (2) | 2.18 (2) | 2.791 (2) | 128 (2) |
| N3—H31···O2Wv | 0.83 (2) | 2.27 (2) | 3.082 (2) | 163 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2 | 0.87 (3) | 2.04 (3) | 2.884 (2) | 162 (3) |
| O2 | 0.86 (3) | 2.11 (3) | 2.885 (2) | 150 (3) |
| O1 | 0.89 (3) | 1.93 (3) | 2.824 (2) | 175 (3) |
| O1 | 0.81 (3) | 2.24 (3) | 2.982 (2) | 153 (3) |
| N6—H6 | 0.84 (2) | 2.07 (2) | 2.905 (2) | 177 (2) |
| N4—H42⋯O1 | 0.88 (2) | 2.14 (3) | 2.995 (2) | 165 (2) |
| N4—H41⋯O1iv | 0.81 (2) | 2.08 (2) | 2.874 (2) | 169 (2) |
| N3—H32⋯N5 | 0.86 (2) | 2.18 (2) | 2.791 (2) | 128 (2) |
| N3—H31⋯O2 | 0.83 (2) | 2.27 (2) | 3.082 (2) | 163 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .