Literature DB >> 21581367

Methyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(12)H(11)BrO(4)S, was synthesized by the oxidation of methyl 2-(5-bromo-3-methyl-sulfanyl-1-benzofuran-2-yl)acetate with 3-chloro-peroxy-benzoic acid. The O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran ring system. The crystal structure is stabilized by C-H⋯π inter-actions, involving a methyl H atom and the benzene ring of a neighbouring mol-ecule, and by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581367      PMCID: PMC2959898          DOI: 10.1107/S1600536808037768

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar methyl 2-(3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives, see: Choi et al. (2008a ▶,b ▶).

Experimental

Crystal data

C12H11BrO4S M = 331.18 Triclinic, a = 7.9696 (5) Å b = 9.1146 (6) Å c = 10.3100 (7) Å α = 72.587 (1)° β = 78.716 (1)° γ = 69.082 (1)° V = 664.17 (8) Å3 Z = 2 Mo Kα radiation μ = 3.25 mm−1 T = 298 (2) K 0.40 × 0.30 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.327, T max = 0.530 3786 measured reflections 2560 independent reflections 2084 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.099 S = 0.98 2560 reflections 164 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.80 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536808037768/su2077sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037768/su2077Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11BrO4SZ = 2
Mr = 331.18F000 = 332
Triclinic, P1Dx = 1.656 Mg m3
Hall symbol: -P 1Melting point = 405–406 K
a = 7.9696 (5) ÅMo Kα radiation λ = 0.71073 Å
b = 9.1146 (6) ÅCell parameters from 1892 reflections
c = 10.3100 (7) Åθ = 2.1–27.8º
α = 72.587 (1)ºµ = 3.25 mm1
β = 78.716 (1)ºT = 298 (2) K
γ = 69.082 (1)ºBlock, colourless
V = 664.17 (8) Å30.40 × 0.30 × 0.20 mm
Bruker SMART CCD diffractometer2560 independent reflections
Radiation source: fine-focus sealed tube2084 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.015
Detector resolution: 10.0 pixels mm-1θmax = 26.0º
T = 298(2) Kθmin = 2.5º
φ and ω scansh = −9→5
Absorption correction: multi-scan(SADABS; Sheldrick, 1999)k = −11→11
Tmin = 0.327, Tmax = 0.530l = −12→12
3786 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.099  w = 1/[σ2(Fo2) + (0.0506P)2 + 0.5362P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.001
2560 reflectionsΔρmax = 0.35 e Å3
164 parametersΔρmin = −0.80 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.26775 (5)0.20066 (4)0.38327 (5)0.07396 (18)
S0.73771 (11)0.63026 (10)0.03527 (7)0.0505 (2)
O10.8367 (3)0.4636 (2)0.42105 (19)0.0450 (5)
O20.7437 (4)0.4993 (3)−0.0262 (2)0.0668 (7)
O31.0188 (3)0.8974 (3)0.2240 (3)0.0718 (7)
O40.7513 (3)0.8989 (3)0.1905 (3)0.0724 (7)
C10.7429 (4)0.5435 (3)0.2117 (3)0.0422 (6)
C20.6455 (4)0.4363 (3)0.2987 (3)0.0408 (6)
C30.5121 (4)0.3798 (3)0.2824 (3)0.0466 (7)
H30.46510.40890.19930.056*
C40.4537 (4)0.2784 (4)0.3965 (4)0.0510 (7)
C50.5227 (5)0.2305 (4)0.5228 (4)0.0550 (8)
H50.47960.16040.59640.066*
C60.6542 (4)0.2870 (4)0.5381 (3)0.0526 (8)
H60.70230.25660.62100.063*
C70.7117 (4)0.3904 (3)0.4254 (3)0.0419 (6)
C80.8535 (4)0.5552 (3)0.2893 (3)0.0413 (6)
C90.9848 (4)0.6447 (4)0.2609 (3)0.0473 (7)
H9A1.07420.61170.18770.057*
H9B1.04700.61450.34160.057*
C100.9012 (4)0.8259 (4)0.2215 (3)0.0483 (7)
C110.5088 (5)0.7628 (4)0.0366 (4)0.0637 (9)
H11A0.48340.8234−0.05510.096*
H11B0.49180.83630.09160.096*
H11C0.42850.69970.07400.096*
C120.9545 (7)1.0738 (5)0.1880 (7)0.1065 (18)
H12A1.04931.11330.19270.160*
H12B0.85271.11140.25060.160*
H12C0.91911.11310.09680.160*
U11U22U33U12U13U23
Br0.0572 (2)0.0513 (2)0.1163 (4)−0.02436 (17)−0.0138 (2)−0.0133 (2)
S0.0535 (5)0.0626 (5)0.0392 (4)−0.0239 (4)−0.0121 (3)−0.0067 (3)
O10.0450 (11)0.0494 (11)0.0411 (10)−0.0113 (9)−0.0157 (9)−0.0094 (9)
O20.0746 (17)0.0842 (17)0.0506 (13)−0.0229 (14)−0.0132 (12)−0.0286 (12)
O30.0615 (15)0.0579 (14)0.108 (2)−0.0253 (12)−0.0235 (14)−0.0201 (14)
O40.0561 (15)0.0537 (14)0.103 (2)−0.0180 (12)−0.0308 (14)0.0016 (13)
C10.0433 (15)0.0454 (15)0.0412 (14)−0.0144 (13)−0.0090 (12)−0.0122 (12)
C20.0431 (15)0.0361 (14)0.0437 (15)−0.0096 (12)−0.0107 (12)−0.0105 (12)
C30.0475 (17)0.0398 (15)0.0533 (17)−0.0105 (13)−0.0115 (13)−0.0131 (13)
C40.0404 (16)0.0385 (15)0.073 (2)−0.0091 (13)−0.0074 (15)−0.0153 (15)
C50.0507 (18)0.0400 (16)0.0600 (19)−0.0085 (14)−0.0028 (15)−0.0010 (14)
C60.0524 (18)0.0459 (17)0.0472 (17)−0.0063 (14)−0.0094 (14)−0.0025 (13)
C70.0393 (15)0.0379 (14)0.0455 (15)−0.0044 (12)−0.0102 (12)−0.0117 (12)
C80.0424 (16)0.0395 (14)0.0429 (15)−0.0099 (12)−0.0103 (12)−0.0116 (12)
C90.0423 (16)0.0534 (17)0.0510 (16)−0.0155 (13)−0.0136 (13)−0.0142 (14)
C100.0496 (18)0.0541 (17)0.0458 (16)−0.0208 (15)−0.0087 (13)−0.0116 (14)
C110.063 (2)0.059 (2)0.066 (2)−0.0120 (17)−0.0275 (17)−0.0062 (17)
C120.100 (4)0.057 (2)0.175 (5)−0.034 (2)−0.038 (4)−0.019 (3)
Br—C41.898 (3)C4—C51.400 (5)
S—O21.493 (3)C5—C61.374 (5)
S—C11.755 (3)C5—H50.9300
S—C111.793 (4)C6—C71.376 (4)
O1—C71.370 (3)C6—H60.9300
O1—C81.375 (3)C8—C91.481 (4)
O3—C101.327 (4)C9—C101.501 (4)
O3—C121.454 (5)C9—H9A0.9700
O4—C101.195 (4)C9—H9B0.9700
C1—C81.350 (4)C11—H11A0.9600
C1—C21.451 (4)C11—H11B0.9600
C2—C31.391 (4)C11—H11C0.9600
C2—C71.395 (4)C12—H12A0.9600
C3—C41.377 (4)C12—H12B0.9600
C3—H30.9300C12—H12C0.9600
O2—S—C1106.07 (14)C6—C7—C2123.2 (3)
O2—S—C11106.21 (17)C1—C8—O1111.1 (2)
C1—S—C1198.55 (16)C1—C8—C9133.3 (3)
C7—O1—C8106.4 (2)O1—C8—C9115.6 (2)
C10—O3—C12116.0 (3)C8—C9—C10114.0 (2)
C8—C1—C2107.2 (3)C8—C9—H9A108.8
C8—C1—S124.7 (2)C10—C9—H9A108.8
C2—C1—S127.9 (2)C8—C9—H9B108.8
C3—C2—C7120.0 (3)C10—C9—H9B108.8
C3—C2—C1135.6 (3)H9A—C9—H9B107.7
C7—C2—C1104.4 (2)O4—C10—O3123.4 (3)
C4—C3—C2116.2 (3)O4—C10—C9126.2 (3)
C4—C3—H3121.9O3—C10—C9110.4 (3)
C2—C3—H3121.9S—C11—H11A109.5
C3—C4—C5123.5 (3)S—C11—H11B109.5
C3—C4—Br118.6 (3)H11A—C11—H11B109.5
C5—C4—Br117.9 (2)S—C11—H11C109.5
C6—C5—C4119.9 (3)H11A—C11—H11C109.5
C6—C5—H5120.0H11B—C11—H11C109.5
C4—C5—H5120.0O3—C12—H12A109.5
C5—C6—C7117.1 (3)O3—C12—H12B109.5
C5—C6—H6121.5H12A—C12—H12B109.5
C7—C6—H6121.5O3—C12—H12C109.5
O1—C7—C6125.9 (3)H12A—C12—H12C109.5
O1—C7—C2110.9 (2)H12B—C12—H12C109.5
O2—S—C1—C8131.5 (3)C5—C6—C7—C2−1.3 (5)
C11—S—C1—C8−118.8 (3)C3—C2—C7—O1−177.8 (2)
O2—S—C1—C2−42.4 (3)C1—C2—C7—O11.1 (3)
C11—S—C1—C267.3 (3)C3—C2—C7—C61.4 (4)
C8—C1—C2—C3177.9 (3)C1—C2—C7—C6−179.7 (3)
S—C1—C2—C3−7.3 (5)C2—C1—C8—O10.1 (3)
C8—C1—C2—C7−0.7 (3)S—C1—C8—O1−174.9 (2)
S—C1—C2—C7174.1 (2)C2—C1—C8—C9−179.8 (3)
C7—C2—C3—C4−0.3 (4)S—C1—C8—C95.1 (5)
C1—C2—C3—C4−178.8 (3)C7—O1—C8—C10.6 (3)
C2—C3—C4—C5−0.8 (4)C7—O1—C8—C9−179.5 (2)
C2—C3—C4—Br178.5 (2)C1—C8—C9—C1063.6 (4)
C3—C4—C5—C60.9 (5)O1—C8—C9—C10−116.3 (3)
Br—C4—C5—C6−178.4 (2)C12—O3—C10—O40.8 (5)
C4—C5—C6—C70.1 (5)C12—O3—C10—C9−179.9 (4)
C8—O1—C7—C6179.7 (3)C8—C9—C10—O4−12.9 (5)
C8—O1—C7—C2−1.1 (3)C8—C9—C10—O3167.7 (3)
C5—C6—C7—O1177.8 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.433.334 (4)163
C9—H9B···O1ii0.972.593.555 (3)171
C9—H9A···O2iii0.972.223.177 (4)169
C12—H12B···Cgiv0.962.993.903 (4)159
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the benzene ring C2–C7.

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.932.433.334 (4)163
C9—H9B⋯O1ii0.972.593.555 (3)171
C9—H9A⋯O2iii0.972.223.177 (4)169
C12—H12BCgiv0.962.993.903 (4)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

3.  Methyl 2-(5-chloro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18
  3 in total
  6 in total

1.  Methyl 2-(5-fluoro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

2.  Ethyl 2-(5-bromo-3-ethyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

3.  2-(5-Bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

4.  Propyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-13

5.  Butyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

6.  2-Chloro-ethyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-10
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.