Literature DB >> 21583845

2-Chloro-ethyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(13)H(12)BrClO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. There is a mean deviation of 0.016 (4) Å from the least-squares plane defined by the nine constituent benzofuran atoms. The crystal structure is stabilized by aromatic π-π inter-actions between the benzene rings of neighbouring mol-ecules [centroid-centroid distance = 3.689 (7) Å]and by a weak C-H⋯π interaction between an H atom of the methylene group bonded to the carboxylate O atom and the benzene ring of an adjacent molecule. In addition, the crystal structure exhibits weak non-classical inter-molecular C-H⋯O hydrogen bonds. The chloro-ethyl group is disordered over two positions, with refined site-occupancy factors of 0.767 (6) and 0.233 (6).

Entities:  

Year:  2009        PMID: 21583845      PMCID: PMC2977709          DOI: 10.1107/S1600536809012847

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-bromo-3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives. see: Choi et al. (2008a ▶,b ▶).

Experimental

Crystal data

C13H12BrClO4S M = 379.65 Triclinic, a = 8.495 (1) Å b = 9.882 (2) Å c = 10.277 (2) Å α = 71.095 (3)° β = 80.331 (3)° γ = 65.012 (2)° V = 739.3 (2) Å3 Z = 2 Mo Kα radiation μ = 3.11 mm−1 T = 298 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.475, T max = 0.736 5479 measured reflections 2575 independent reflections 1972 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.133 S = 1.07 2575 reflections 192 parameters 57 restraints H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.81 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012847/sj2602sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012847/sj2602Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12BrClO4SZ = 2
Mr = 379.65F(000) = 380
Triclinic, P1Dx = 1.705 Mg m3
Hall symbol: -p 1Mo Kα radiation, λ = 0.71073 Å
a = 8.495 (1) ÅCell parameters from 2253 reflections
b = 9.882 (2) Åθ = 2.7–25.7°
c = 10.277 (2) ŵ = 3.11 mm1
α = 71.095 (3)°T = 298 K
β = 80.331 (3)°Block, colorless
γ = 65.012 (2)°0.30 × 0.20 × 0.10 mm
V = 739.3 (2) Å3
Bruker SMART CCD diffractometer2575 independent reflections
Radiation source: fine-focus sealed tube1972 reflections with I > 2σ(I)
graphiteRint = 0.027
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.1°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −11→11
Tmin = 0.475, Tmax = 0.736l = −12→12
5479 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: difference Fourier map
wR(F2) = 0.133H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.054P)2 + 1.6319P] where P = (Fo2 + 2Fc2)/3
2575 reflections(Δ/σ)max < 0.000
192 parametersΔρmax = 0.80 e Å3
57 restraintsΔρmin = −0.80 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br0.68390 (9)0.78885 (8)0.10766 (7)0.0571 (3)
ClA−0.1810 (4)−0.0480 (3)0.3580 (3)0.0928 (12)0.764 (6)
ClB−0.0308 (13)−0.0729 (11)0.1579 (12)0.0928 (12)0.24
S0.25778 (18)0.40156 (16)0.46589 (13)0.0391 (4)
O10.1648 (4)0.5435 (4)0.0705 (3)0.0355 (8)
O20.0404 (6)0.1375 (5)0.2446 (7)0.0824 (18)
O30.2843 (6)0.1340 (5)0.2991 (5)0.0622 (12)
O40.2572 (6)0.5265 (5)0.5185 (4)0.0537 (11)
C10.2533 (6)0.4767 (6)0.2849 (5)0.0313 (11)
C20.3429 (6)0.5699 (5)0.1946 (5)0.0287 (11)
C30.4664 (7)0.6219 (6)0.2093 (6)0.0362 (12)
H30.51260.59600.29410.043*
C40.5167 (7)0.7138 (6)0.0920 (6)0.0379 (13)
C50.4497 (7)0.7563 (6)−0.0359 (6)0.0395 (13)
H50.48490.8216−0.11100.047*
C60.3306 (7)0.7020 (6)−0.0522 (6)0.0382 (13)
H60.28600.7271−0.13750.046*
C70.2815 (6)0.6090 (6)0.0641 (5)0.0326 (12)
C80.1505 (7)0.4640 (6)0.2065 (5)0.0328 (11)
C90.0354 (7)0.3767 (6)0.2371 (6)0.0377 (13)
H9A−0.03830.41410.15980.045*
H9B−0.03920.39680.31700.045*
C100.1380 (8)0.2042 (7)0.2639 (6)0.0446 (14)
C11A0.1269 (13)−0.0271 (11)0.2556 (12)0.069 (3)0.764 (6)
H11A0.2031−0.07980.33290.083*0.764 (6)
H11B0.1968−0.04220.17250.083*0.764 (6)
C12A−0.004 (3)−0.092 (3)0.275 (2)0.162 (6)0.764 (6)
H12A0.0570−0.20310.31430.195*0.764 (6)
H12B−0.0332−0.07790.18320.195*0.764 (6)
C11B0.107 (4)−0.044 (3)0.343 (4)0.069 (3)0.24
H11C0.2242−0.10450.31530.083*0.236 (6)
H11D0.1055−0.04800.43850.083*0.236 (6)
C12B−0.013 (10)−0.105 (10)0.324 (4)0.162 (6)0.24
H12C−0.1259−0.05420.36480.195*0.236 (6)
H12D0.0286−0.21560.36960.195*0.236 (6)
C130.4757 (8)0.2580 (7)0.4793 (7)0.0566 (17)
H13A0.55530.30840.44400.085*
H13B0.49040.18850.42690.085*
H13C0.49830.20020.57400.085*
U11U22U33U12U13U23
Br0.0555 (4)0.0544 (4)0.0722 (5)−0.0345 (3)−0.0077 (3)−0.0112 (3)
ClA0.086 (2)0.0646 (16)0.118 (2)−0.0415 (14)0.0202 (16)−0.0107 (14)
ClB0.086 (2)0.0646 (16)0.118 (2)−0.0415 (14)0.0202 (16)−0.0107 (14)
S0.0433 (8)0.0443 (8)0.0292 (7)−0.0198 (7)−0.0030 (6)−0.0056 (6)
O10.039 (2)0.041 (2)0.0288 (19)−0.0193 (17)−0.0074 (16)−0.0062 (16)
O20.044 (3)0.040 (3)0.174 (6)−0.012 (2)−0.022 (3)−0.040 (3)
O30.045 (3)0.046 (3)0.087 (3)−0.014 (2)−0.021 (2)−0.006 (2)
O40.061 (3)0.065 (3)0.041 (2)−0.022 (2)−0.001 (2)−0.027 (2)
C10.033 (3)0.033 (3)0.030 (3)−0.013 (2)−0.005 (2)−0.009 (2)
C20.030 (3)0.023 (2)0.029 (3)−0.005 (2)−0.002 (2)−0.009 (2)
C30.039 (3)0.033 (3)0.038 (3)−0.012 (2)−0.004 (2)−0.014 (2)
C40.039 (3)0.033 (3)0.049 (3)−0.017 (2)−0.002 (3)−0.015 (3)
C50.040 (3)0.035 (3)0.040 (3)−0.015 (2)0.001 (3)−0.007 (2)
C60.042 (3)0.039 (3)0.030 (3)−0.014 (3)−0.004 (2)−0.007 (2)
C70.029 (3)0.028 (3)0.039 (3)−0.007 (2)−0.006 (2)−0.012 (2)
C80.033 (3)0.031 (3)0.033 (3)−0.012 (2)−0.001 (2)−0.009 (2)
C90.036 (3)0.045 (3)0.037 (3)−0.020 (3)−0.005 (2)−0.012 (3)
C100.045 (4)0.041 (3)0.048 (4)−0.016 (3)−0.003 (3)−0.012 (3)
C11A0.059 (4)0.062 (4)0.090 (5)−0.019 (3)−0.002 (4)−0.032 (4)
C12A0.170 (8)0.120 (7)0.171 (9)−0.051 (6)0.035 (7)−0.037 (7)
C11B0.059 (4)0.062 (4)0.090 (5)−0.019 (3)−0.002 (4)−0.032 (4)
C12B0.170 (8)0.120 (7)0.171 (9)−0.051 (6)0.035 (7)−0.037 (7)
C130.055 (4)0.051 (4)0.057 (4)−0.010 (3)−0.017 (3)−0.012 (3)
Br—C41.907 (5)C5—H50.9300
ClA—C12A1.559 (19)C6—C71.375 (7)
ClB—C12B1.65 (3)C6—H60.9300
S—O41.498 (4)C8—C91.494 (7)
S—C11.766 (5)C9—C101.505 (8)
S—C131.788 (6)C9—H9A0.9700
O1—C81.377 (6)C9—H9B0.9700
O1—C71.378 (6)C11A—C12A1.459 (15)
O2—C101.328 (7)C11A—H11A0.9700
O2—C11A1.448 (9)C11A—H11B0.9700
O2—C11B1.65 (2)C12A—H12A0.9700
O3—C101.190 (7)C12A—H12B0.9700
C1—C81.350 (7)C11B—C12B1.45 (2)
C1—C21.445 (7)C11B—H11C0.9700
C2—C31.395 (7)C11B—H11D0.9700
C2—C71.396 (7)C12B—H12C0.9700
C3—C41.380 (7)C12B—H12D0.9700
C3—H30.9300C13—H13A0.9600
C4—C51.385 (8)C13—H13B0.9600
C5—C61.383 (7)C13—H13C0.9600
O4—S—C1105.9 (2)C10—C9—H9B109.2
O4—S—C13106.1 (3)H9A—C9—H9B107.9
C1—S—C1398.5 (3)O3—C10—O2123.5 (5)
C8—O1—C7106.5 (4)O3—C10—C9126.4 (5)
C10—O2—C11A116.1 (6)O2—C10—C9110.0 (5)
C10—O2—C11B109.4 (13)O2—C11A—C12A108.9 (13)
C11A—O2—C11B31.3 (12)O2—C11A—H11A109.9
C8—C1—C2107.4 (4)C12A—C11A—H11A109.9
C8—C1—S123.8 (4)O2—C11A—H11B109.9
C2—C1—S128.7 (4)C12A—C11A—H11B109.9
C3—C2—C7119.1 (5)H11A—C11A—H11B108.3
C3—C2—C1136.0 (5)C11A—C12A—ClA128.4 (16)
C7—C2—C1104.9 (4)C11A—C12A—H12A105.2
C4—C3—C2116.8 (5)ClA—C12A—H12A105.2
C4—C3—H3121.6C11A—C12A—H12B105.2
C2—C3—H3121.6ClA—C12A—H12B105.2
C3—C4—C5123.3 (5)H12A—C12A—H12B105.9
C3—C4—Br118.2 (4)C12B—C11B—O2106 (4)
C5—C4—Br118.4 (4)C12B—C11B—H11C110.5
C6—C5—C4120.3 (5)O2—C11B—H11C110.5
C6—C5—H5119.9C12B—C11B—H11D110.5
C4—C5—H5119.9O2—C11B—H11D110.5
C7—C6—C5116.6 (5)H11C—C11B—H11D108.7
C7—C6—H6121.7C11B—C12B—ClB110 (3)
C5—C6—H6121.7C11B—C12B—H12C109.7
C6—C7—O1126.0 (5)ClB—C12B—H12C109.7
C6—C7—C2123.8 (5)C11B—C12B—H12D109.7
O1—C7—C2110.3 (4)ClB—C12B—H12D109.7
C1—C8—O1110.9 (4)H12C—C12B—H12D108.2
C1—C8—C9133.1 (5)S—C13—H13A109.5
O1—C8—C9115.9 (4)S—C13—H13B109.5
C8—C9—C10112.0 (4)H13A—C13—H13B109.5
C8—C9—H9A109.2S—C13—H13C109.5
C10—C9—H9A109.2H13A—C13—H13C109.5
C8—C9—H9B109.2H13B—C13—H13C109.5
O4—S—C1—C8−135.7 (5)C1—C2—C7—O1−1.1 (5)
C13—S—C1—C8114.8 (5)C2—C1—C8—O1−0.5 (6)
O4—S—C1—C239.3 (5)S—C1—C8—O1175.4 (3)
C13—S—C1—C2−70.2 (5)C2—C1—C8—C9176.0 (5)
C8—C1—C2—C3−178.3 (6)S—C1—C8—C9−8.1 (9)
S—C1—C2—C36.0 (9)C7—O1—C8—C1−0.1 (5)
C8—C1—C2—C70.9 (5)C7—O1—C8—C9−177.3 (4)
S—C1—C2—C7−174.7 (4)C1—C8—C9—C10−71.8 (8)
C7—C2—C3—C41.7 (7)O1—C8—C9—C10104.6 (5)
C1—C2—C3—C4−179.1 (5)C11A—O2—C10—O3−5.9 (11)
C2—C3—C4—C50.7 (8)C11B—O2—C10—O327.3 (16)
C2—C3—C4—Br179.5 (4)C11A—O2—C10—C9175.0 (7)
C3—C4—C5—C6−2.4 (8)C11B—O2—C10—C9−151.7 (14)
Br—C4—C5—C6178.8 (4)C8—C9—C10—O321.9 (9)
C4—C5—C6—C71.5 (8)C8—C9—C10—O2−159.1 (5)
C5—C6—C7—O1179.8 (5)C10—O2—C11A—C12A162.3 (11)
C5—C6—C7—C20.9 (8)C11B—O2—C11A—C12A78 (3)
C8—O1—C7—C6−178.2 (5)O2—C11A—C12A—ClA−36 (3)
C8—O1—C7—C20.8 (5)C10—O2—C11B—C12B176 (3)
C3—C2—C7—C6−2.6 (8)C11A—O2—C11B—C12B−76 (4)
C1—C2—C7—C6178.0 (5)O2—C11B—C12B—ClB52 (6)
C3—C2—C7—O1178.4 (4)
D—H···AD—HH···AD···AD—H···A
C11A—H11B···Cgi0.973.073.779 (7)131
C3—H3···O4ii0.932.603.483 (7)159
C5—H5···O3iii0.932.583.423 (7)150
C9—H9A···O1iv0.972.603.545 (6)165
C9—H9B···O4v0.972.343.294 (7)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11A—H11BCgi0.973.073.779 (7)131
C3—H3⋯O4ii0.932.603.483 (7)159
C5—H5⋯O3iii0.932.583.423 (7)150
C9—H9A⋯O1iv0.972.603.545 (6)165
C9—H9B⋯O4v0.972.343.294 (7)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg is the centroid of the C2–C7 benzene ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

3.  Isopropyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  3 in total

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