Literature DB >> 21580999

Methyl 2-(5-chloro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(12)H(11)ClO(4)S, was prepared by the oxidation of methyl 2-(5-chloro-3-methyl-sulfanyl-1-benzofuran-2-yl)acetate with 3-chloro-peroxy-benzoic acid. The O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. The crystal structure is stabilized by aromatic π-π inter-actions between the benzene rings of neighbouring mol-ecules [centroid-to-centroid distance = 3.809 (2) Å], and by C-H⋯π inter-actions between a methyl H atom and the furan ring of an adjacent mol-ecule. In addition, the crystal structure exhibits inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21580999      PMCID: PMC2959551          DOI: 10.1107/S1600536808033503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the pharmacological activities of benzofuran compounds, see: Ward (1999 ▶). For the crystal structures of similar 2-(3-methyl­sulfinyl-1-benzofuran-2-yl)acetic acid derivatives, see: Choi et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C12H11ClO4S M = 286.72 Triclinic, a = 7.8910 (5) Å b = 8.9416 (6) Å c = 10.4048 (7) Å α = 73.774 (1)° β = 78.743 (1)° γ = 68.559 (1)° V = 652.55 (7) Å3 Z = 2 Mo Kα radiation μ = 0.46 mm−1 T = 298 (2) K 0.40 × 0.40 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.827, T max = 0.907 3753 measured reflections 2525 independent reflections 2123 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.101 S = 1.06 2525 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033503/zl2153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033503/zl2153Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11ClO4SZ = 2
Mr = 286.72F(000) = 296
Triclinic, P1Dx = 1.459 Mg m3
Hall symbol: -P_1Melting point = 415–416 K
a = 7.8910 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.9416 (6) ÅCell parameters from 2313 reflections
c = 10.4048 (7) Åθ = 2.8–28.2°
α = 73.774 (1)°µ = 0.46 mm1
β = 78.743 (1)°T = 298 K
γ = 68.559 (1)°Block, colourless
V = 652.55 (7) Å30.40 × 0.40 × 0.20 mm
Bruker SMART CCD diffractometer2525 independent reflections
Radiation source: fine-focus sealed tube2123 reflections with I > 2σ(I)
graphiteRint = 0.012
Detector resolution: 10.0 pixels mm-1θmax = 26.0°, θmin = 2.5°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −11→7
Tmin = 0.827, Tmax = 0.907l = −12→12
3753 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0497P)2 + 0.2053P] where P = (Fo2 + 2Fc2)/3
2525 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl−0.22541 (8)0.20560 (7)0.87139 (8)0.0834 (2)
S0.23616 (7)0.63233 (7)0.54121 (5)0.05176 (17)
O10.33659 (17)0.45642 (16)0.92043 (12)0.0468 (3)
O20.5278 (2)0.89402 (19)0.72451 (19)0.0728 (5)
O30.2521 (2)0.9006 (2)0.69823 (19)0.0748 (5)
O40.2462 (2)0.4995 (2)0.47609 (15)0.0688 (4)
C10.2400 (2)0.5423 (2)0.71481 (17)0.0429 (4)
C20.1418 (2)0.4347 (2)0.79676 (17)0.0424 (4)
C30.0067 (3)0.3789 (2)0.7780 (2)0.0489 (4)
H3−0.040 (3)0.409 (3)0.694 (2)0.053 (6)*
C4−0.0519 (3)0.2747 (2)0.8878 (2)0.0555 (5)
C50.0180 (3)0.2229 (3)1.0116 (2)0.0596 (5)
H5−0.02540.15111.08180.072*
C60.1517 (3)0.2778 (2)1.0307 (2)0.0556 (5)
H60.20070.24471.11240.067*
C70.2087 (2)0.3845 (2)0.92181 (19)0.0450 (4)
C80.3537 (2)0.5507 (2)0.79220 (18)0.0433 (4)
C90.4870 (3)0.6396 (2)0.7667 (2)0.0494 (4)
H9A0.58010.60240.69590.059*
H9B0.54700.61050.84750.059*
C100.4045 (3)0.8245 (3)0.72678 (19)0.0489 (4)
C110.4682 (5)1.0733 (3)0.6855 (4)0.1092 (12)
H11A0.41581.11040.60160.164*
H11B0.57131.10980.67540.164*
H11C0.37821.11800.75370.164*
C120.0024 (3)0.7661 (3)0.5437 (2)0.0661 (6)
H12A−0.02230.82970.45430.099*
H12B−0.01830.83900.60180.099*
H12C−0.07720.70110.57640.099*
U11U22U33U12U13U23
Cl0.0594 (4)0.0550 (3)0.1360 (6)−0.0274 (3)−0.0214 (4)−0.0029 (4)
S0.0541 (3)0.0652 (3)0.0390 (3)−0.0251 (2)−0.0121 (2)−0.0044 (2)
O10.0496 (7)0.0499 (7)0.0406 (7)−0.0133 (6)−0.0141 (5)−0.0075 (5)
O20.0579 (9)0.0575 (9)0.1130 (14)−0.0244 (7)−0.0186 (9)−0.0208 (9)
O30.0557 (9)0.0564 (9)0.1072 (13)−0.0179 (7)−0.0286 (9)0.0023 (9)
O40.0751 (10)0.0872 (11)0.0505 (8)−0.0219 (9)−0.0140 (7)−0.0269 (8)
C10.0460 (9)0.0439 (10)0.0394 (9)−0.0139 (8)−0.0101 (7)−0.0081 (7)
C20.0436 (9)0.0383 (9)0.0431 (9)−0.0087 (7)−0.0086 (7)−0.0096 (7)
C30.0465 (10)0.0432 (10)0.0584 (12)−0.0125 (8)−0.0119 (9)−0.0123 (9)
C40.0449 (10)0.0376 (10)0.0800 (14)−0.0101 (8)−0.0095 (10)−0.0100 (9)
C50.0537 (12)0.0419 (10)0.0671 (13)−0.0109 (9)0.0000 (10)0.0018 (9)
C60.0564 (12)0.0489 (11)0.0489 (11)−0.0091 (9)−0.0087 (9)−0.0009 (9)
C70.0437 (9)0.0416 (10)0.0455 (10)−0.0078 (8)−0.0086 (7)−0.0093 (8)
C80.0428 (9)0.0448 (10)0.0417 (9)−0.0107 (8)−0.0107 (7)−0.0093 (7)
C90.0449 (10)0.0534 (11)0.0534 (11)−0.0163 (8)−0.0143 (8)−0.0115 (9)
C100.0472 (10)0.0557 (11)0.0468 (10)−0.0193 (9)−0.0064 (8)−0.0124 (8)
C110.095 (2)0.0580 (16)0.186 (4)−0.0338 (16)−0.030 (2)−0.0244 (19)
C120.0659 (13)0.0603 (13)0.0673 (14)−0.0152 (11)−0.0275 (11)−0.0009 (11)
Cl—C41.748 (2)C4—C51.391 (3)
S—O41.4950 (17)C5—C61.381 (3)
S—C11.7613 (18)C5—H50.9300
S—C121.794 (2)C6—C71.380 (3)
O1—C81.376 (2)C6—H60.9300
O1—C71.377 (2)C8—C91.482 (3)
O2—C101.327 (2)C9—C101.504 (3)
O2—C111.454 (3)C9—H9A0.9700
O3—C101.194 (2)C9—H9B0.9700
C1—C81.350 (2)C11—H11A0.9600
C1—C21.443 (3)C11—H11B0.9600
C2—C71.394 (3)C11—H11C0.9600
C2—C31.396 (3)C12—H12A0.9600
C3—C41.378 (3)C12—H12B0.9600
C3—H30.94 (2)C12—H12C0.9600
O4—S—C1105.98 (9)C6—C7—C2123.72 (18)
O4—S—C12106.01 (11)C1—C8—O1110.86 (16)
C1—S—C1298.50 (10)C1—C8—C9133.29 (17)
C8—O1—C7106.35 (13)O1—C8—C9115.85 (15)
C10—O2—C11116.4 (2)C8—C9—C10114.36 (15)
C8—C1—C2107.57 (15)C8—C9—H9A108.7
C8—C1—S124.18 (15)C10—C9—H9A108.7
C2—C1—S127.95 (14)C8—C9—H9B108.7
C7—C2—C3119.64 (17)C10—C9—H9B108.7
C7—C2—C1104.63 (16)H9A—C9—H9B107.6
C3—C2—C1135.72 (17)O3—C10—O2123.6 (2)
C4—C3—C2116.31 (19)O3—C10—C9126.28 (19)
C4—C3—H3121.9 (13)O2—C10—C9110.06 (16)
C2—C3—H3121.8 (13)O2—C11—H11A109.5
C3—C4—C5123.7 (2)O2—C11—H11B109.5
C3—C4—Cl118.25 (17)H11A—C11—H11B109.5
C5—C4—Cl118.09 (16)O2—C11—H11C109.5
C6—C5—C4120.25 (19)H11A—C11—H11C109.5
C6—C5—H5119.9H11B—C11—H11C109.5
C4—C5—H5119.9S—C12—H12A109.5
C7—C6—C5116.40 (19)S—C12—H12B109.5
C7—C6—H6121.8H12A—C12—H12B109.5
C5—C6—H6121.8S—C12—H12C109.5
O1—C7—C6125.70 (17)H12A—C12—H12C109.5
O1—C7—C2110.58 (15)H12B—C12—H12C109.5
O4—S—C1—C8129.68 (17)C5—C6—C7—C2−1.4 (3)
C12—S—C1—C8−120.88 (18)C3—C2—C7—O1−178.32 (15)
O4—S—C1—C2−43.19 (19)C1—C2—C7—O11.0 (2)
C12—S—C1—C266.26 (19)C3—C2—C7—C61.4 (3)
C8—C1—C2—C7−0.4 (2)C1—C2—C7—C6−179.31 (18)
S—C1—C2—C7173.45 (14)C2—C1—C8—O1−0.4 (2)
C8—C1—C2—C3178.8 (2)S—C1—C8—O1−174.49 (13)
S—C1—C2—C3−7.4 (3)C2—C1—C8—C9−179.77 (19)
C7—C2—C3—C4−0.2 (3)S—C1—C8—C96.1 (3)
C1—C2—C3—C4−179.2 (2)C7—O1—C8—C11.0 (2)
C2—C3—C4—C5−1.0 (3)C7—O1—C8—C9−179.52 (15)
C2—C3—C4—Cl178.26 (14)C1—C8—C9—C1060.7 (3)
C3—C4—C5—C61.0 (3)O1—C8—C9—C10−118.61 (18)
Cl—C4—C5—C6−178.22 (16)C11—O2—C10—O30.5 (4)
C4—C5—C6—C70.2 (3)C11—O2—C10—C9179.1 (2)
C8—O1—C7—C6179.08 (18)C8—C9—C10—O3−10.1 (3)
C8—O1—C7—C2−1.22 (19)C8—C9—C10—O2171.31 (17)
C5—C6—C7—O1178.32 (18)
D—H···AD—HH···AD···AD—H···A
C11—H11C···Cg1i0.962.923.858 (2)165
C3—H3···O4ii0.94 (2)2.41 (2)3.320 (3)162.7 (17)
C9—H9B···O1iii0.972.593.550 (2)172
C9—H9A···O4iv0.972.233.183 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1/C2/C7/O1/C8 furan ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11CCg1i0.962.923.858 (2)165
C3—H3⋯O4ii0.94 (2)2.41 (2)3.320 (3)162.7 (17)
C9—H9B⋯O1iii0.972.593.550 (2)172
C9—H9A⋯O4iv0.972.233.183 (3)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  2 in total
  3 in total

1.  Methyl 2-(5-fluoro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

2.  Methyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

3.  Propyl 2-(5-chloro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-13
  3 in total

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