Literature DB >> 21581355

Isopropyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(14)H(15)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. The crystal structure is stabilized by C-H⋯π inter-actions between a methyl H atom and the benzene ring of an adjacent mol-ecule, and by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581355      PMCID: PMC2960084          DOI: 10.1107/S1600536808037471

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar isopropyl 2-(3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives, see: Choi et al. (2008a ▶,b ▶).

Experimental

Crystal data

C14H15IO4S M = 406.22 Triclinic, a = 8.0584 (7) Å b = 10.1959 (9) Å c = 10.8367 (9) Å α = 70.369 (2)° β = 81.926 (2)° γ = 66.882 (1)° V = 771.24 (12) Å3 Z = 2 Mo Kα radiation μ = 2.22 mm−1 T = 298 (2) K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.595, T max = 0.806 4396 measured reflections 2965 independent reflections 2639 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.079 S = 1.13 2965 reflections 182 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.57 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037471/bq2107sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037471/bq2107Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15IO4SZ = 2
Mr = 406.22F000 = 400
Triclinic, P1Dx = 1.749 Mg m3
Hall symbol: -P 1Melting point = 420–421 K
a = 8.0584 (7) ÅMo Kα radiation λ = 0.71073 Å
b = 10.1959 (9) ÅCell parameters from 3094 reflections
c = 10.8367 (9) Åθ = 2.5–28.2º
α = 70.369 (2)ºµ = 2.22 mm1
β = 81.926 (2)ºT = 298 (2) K
γ = 66.882 (1)ºBlock, colorless
V = 771.24 (12) Å30.30 × 0.20 × 0.10 mm
Bruker SMART CCD diffractometer2965 independent reflections
Radiation source: fine-focus sealed tube2639 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.011
Detector resolution: 10.0 pixels mm-1θmax = 26.0º
T = 298(2) Kθmin = 2.5º
φ and ω scansh = −9→9
Absorption correction: multi-scan(SADABS; Sheldrick, 1999)k = −12→10
Tmin = 0.595, Tmax = 0.806l = −11→13
4396 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.079  w = 1/[σ2(Fo2) + (0.0351P)2 + 0.6769P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
2965 reflectionsΔρmax = 0.62 e Å3
182 parametersΔρmin = −0.57 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.70596 (3)0.79850 (3)0.12855 (3)0.05948 (12)
S0.25632 (12)0.39419 (10)0.46216 (8)0.0450 (2)
O10.1637 (3)0.5266 (2)0.0838 (2)0.0396 (5)
O2−0.0175 (4)0.1492 (3)0.2759 (3)0.0541 (6)
O30.2647 (4)0.1371 (3)0.2867 (3)0.0668 (8)
O40.2538 (4)0.5137 (3)0.5137 (3)0.0601 (7)
C10.2512 (4)0.4675 (3)0.2898 (3)0.0362 (6)
C20.3469 (4)0.5580 (3)0.2042 (3)0.0349 (6)
C30.4715 (4)0.6148 (4)0.2202 (3)0.0398 (7)
H30.51640.59320.30220.048*
C40.5252 (4)0.7044 (3)0.1086 (3)0.0406 (7)
C50.4622 (5)0.7382 (4)−0.0162 (3)0.0430 (7)
H50.50300.7988−0.08840.052*
C60.3394 (5)0.6817 (4)−0.0328 (3)0.0413 (7)
H60.29550.7026−0.11490.050*
C70.2851 (4)0.5925 (3)0.0795 (3)0.0369 (7)
C80.1443 (4)0.4531 (3)0.2138 (3)0.0377 (7)
C90.0157 (5)0.3741 (4)0.2441 (4)0.0434 (7)
H9A−0.06620.41540.17120.052*
H9B−0.05560.39280.32070.052*
C100.1072 (5)0.2070 (4)0.2695 (3)0.0414 (7)
C110.0424 (6)−0.0125 (4)0.2990 (4)0.0661 (12)
H110.1531−0.06700.35060.079*
C12−0.1125 (10)−0.0567 (7)0.3724 (6)0.104 (2)
H12A−0.2185−0.00370.31910.125*
H12B−0.1363−0.03150.45260.125*
H12C−0.0805−0.16260.39190.125*
C130.0701 (9)−0.0397 (5)0.1698 (6)0.0926 (18)
H13A0.1579−0.00060.11950.111*
H13B−0.04200.00960.12350.111*
H13C0.1124−0.14540.18280.111*
C140.4840 (6)0.2608 (5)0.4771 (4)0.0647 (11)
H14A0.56570.31270.44430.097*
H14B0.49890.19470.42730.097*
H14C0.50920.20350.56750.097*
U11U22U33U12U13U23
I0.05565 (17)0.05111 (16)0.0792 (2)−0.03419 (12)−0.00801 (12)−0.00920 (12)
S0.0496 (5)0.0512 (5)0.0385 (4)−0.0270 (4)−0.0031 (3)−0.0082 (4)
O10.0425 (12)0.0397 (12)0.0418 (12)−0.0179 (10)−0.0069 (9)−0.0131 (10)
O20.0601 (15)0.0406 (13)0.0698 (17)−0.0273 (12)−0.0179 (12)−0.0099 (12)
O30.0509 (16)0.0473 (15)0.100 (2)−0.0204 (13)−0.0092 (15)−0.0144 (15)
O40.0719 (18)0.0681 (18)0.0502 (15)−0.0283 (15)−0.0032 (13)−0.0264 (13)
C10.0400 (16)0.0352 (15)0.0373 (17)−0.0179 (13)−0.0038 (13)−0.0099 (13)
C20.0376 (15)0.0296 (14)0.0383 (17)−0.0123 (12)−0.0044 (12)−0.0100 (12)
C30.0412 (17)0.0383 (17)0.0438 (18)−0.0179 (14)−0.0052 (13)−0.0120 (14)
C40.0376 (16)0.0324 (16)0.055 (2)−0.0157 (13)−0.0010 (14)−0.0135 (14)
C50.0472 (18)0.0347 (16)0.0434 (19)−0.0159 (14)0.0017 (14)−0.0073 (14)
C60.0462 (18)0.0385 (17)0.0371 (17)−0.0140 (14)−0.0040 (13)−0.0097 (13)
C70.0394 (16)0.0315 (15)0.0435 (18)−0.0137 (13)−0.0045 (13)−0.0138 (13)
C80.0419 (16)0.0336 (15)0.0414 (17)−0.0155 (13)−0.0040 (13)−0.0128 (13)
C90.0439 (18)0.0441 (18)0.0512 (19)−0.0228 (15)−0.0039 (14)−0.0165 (15)
C100.050 (2)0.0435 (18)0.0382 (17)−0.0264 (16)−0.0039 (14)−0.0100 (14)
C110.085 (3)0.0381 (19)0.078 (3)−0.031 (2)−0.034 (2)0.0010 (19)
C120.178 (7)0.097 (4)0.080 (4)−0.099 (5)0.029 (4)−0.032 (3)
C130.116 (4)0.052 (3)0.104 (4)−0.032 (3)0.044 (3)−0.034 (3)
C140.061 (2)0.059 (2)0.060 (2)−0.012 (2)−0.0181 (19)−0.006 (2)
I—C42.101 (3)C6—C71.385 (5)
S—O41.494 (3)C6—H60.9300
S—C11.763 (3)C8—C91.488 (4)
S—C141.794 (4)C9—C101.509 (5)
O1—C71.375 (4)C9—H9A0.9700
O1—C81.375 (4)C9—H9B0.9700
O2—C101.335 (4)C11—C131.487 (7)
O2—C111.465 (4)C11—C121.521 (7)
O3—C101.192 (4)C11—H110.9800
C1—C81.350 (4)C12—H12A0.9600
C1—C21.445 (4)C12—H12B0.9600
C2—C71.390 (4)C12—H12C0.9600
C2—C31.395 (4)C13—H13A0.9600
C3—C41.380 (5)C13—H13B0.9600
C3—H30.9300C13—H13C0.9600
C4—C51.396 (5)C14—H14A0.9600
C5—C61.382 (5)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
O4—S—C1107.22 (15)C10—C9—H9A108.9
O4—S—C14106.49 (19)C8—C9—H9B108.9
C1—S—C1497.67 (18)C10—C9—H9B108.9
C7—O1—C8106.2 (2)H9A—C9—H9B107.7
C10—O2—C11118.3 (3)O3—C10—O2125.4 (3)
C8—C1—C2107.2 (3)O3—C10—C9125.4 (3)
C8—C1—S124.0 (2)O2—C10—C9109.1 (3)
C2—C1—S128.7 (2)O2—C11—C13108.2 (3)
C7—C2—C3119.4 (3)O2—C11—C12105.4 (4)
C7—C2—C1104.7 (3)C13—C11—C12109.8 (4)
C3—C2—C1135.9 (3)O2—C11—H11111.1
C4—C3—C2116.9 (3)C13—C11—H11111.1
C4—C3—H3121.6C12—C11—H11111.1
C2—C3—H3121.6C11—C12—H12A109.5
C3—C4—C5123.2 (3)C11—C12—H12B109.5
C3—C4—I118.3 (2)H12A—C12—H12B109.5
C5—C4—I118.5 (2)C11—C12—H12C109.5
C6—C5—C4120.2 (3)H12A—C12—H12C109.5
C6—C5—H5119.9H12B—C12—H12C109.5
C4—C5—H5119.9C11—C13—H13A109.5
C5—C6—C7116.4 (3)C11—C13—H13B109.5
C5—C6—H6121.8H13A—C13—H13B109.5
C7—C6—H6121.8C11—C13—H13C109.5
O1—C7—C6125.3 (3)H13A—C13—H13C109.5
O1—C7—C2110.7 (3)H13B—C13—H13C109.5
C6—C7—C2123.9 (3)S—C14—H14A109.5
C1—C8—O1111.1 (3)S—C14—H14B109.5
C1—C8—C9132.6 (3)H14A—C14—H14B109.5
O1—C8—C9116.3 (3)S—C14—H14C109.5
C8—C9—C10113.4 (3)H14A—C14—H14C109.5
C8—C9—H9A108.9H14B—C14—H14C109.5
O4—S—C1—C8−135.0 (3)C3—C2—C7—O1180.0 (3)
C14—S—C1—C8115.0 (3)C1—C2—C7—O1−1.5 (3)
O4—S—C1—C241.4 (3)C3—C2—C7—C6−0.2 (5)
C14—S—C1—C2−68.6 (3)C1—C2—C7—C6178.3 (3)
C8—C1—C2—C70.6 (3)C2—C1—C8—O10.6 (4)
S—C1—C2—C7−176.3 (2)S—C1—C8—O1177.6 (2)
C8—C1—C2—C3178.7 (4)C2—C1—C8—C9179.9 (3)
S—C1—C2—C31.9 (6)S—C1—C8—C9−3.1 (5)
C7—C2—C3—C40.5 (4)C7—O1—C8—C1−1.5 (3)
C1—C2—C3—C4−177.4 (3)C7—O1—C8—C9179.1 (3)
C2—C3—C4—C5−0.6 (5)C1—C8—C9—C10−78.0 (5)
C2—C3—C4—I177.9 (2)O1—C8—C9—C10101.3 (3)
C3—C4—C5—C60.3 (5)C11—O2—C10—O3−3.5 (5)
I—C4—C5—C6−178.2 (2)C11—O2—C10—C9179.5 (3)
C4—C5—C6—C70.1 (5)C8—C9—C10—O312.3 (5)
C8—O1—C7—C6−177.9 (3)C8—C9—C10—O2−170.7 (3)
C8—O1—C7—C21.8 (3)C10—O2—C11—C13−92.6 (4)
C5—C6—C7—O1179.7 (3)C10—O2—C11—C12150.0 (4)
C5—C6—C7—C2−0.1 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3···O4i0.932.573.451 (4)159
C9—H9B···O4ii0.972.413.373 (4)170
C13—H13C···Cgiii0.962.783.532 (5)136
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O4i0.932.573.451 (4)159
C9—H9B⋯O4ii0.972.413.373 (4)170
C13—H13CCgiii0.962.783.532 (5)136

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Isopropyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

3.  Isopropyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09
  3 in total
  4 in total

1.  Methyl 2-(5-iodo-7-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

2.  Propyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17

3.  Isopropyl 2-(5-chloro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-03

4.  Butyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08
  4 in total

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