Literature DB >> 21581881

Butyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(15)H(17)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. The crystal structure is stabilized by weak inter-molecular C-H⋯π inter-actions between a methyl H atom of the methyl-sulfinyl group and the benzene ring of the benzofuran system, and by an I⋯O halogen bond of 3.173 (3) Å and a nearly linear C-I⋯O angle of 171.7 (1)°. In addition, the crystal structure exhibits weak inter-molecular C-H⋯O hydrogen bonds. The O atom of the carbonyl group and the butyl chain are both disordered over two positions with site-occupancy factors from refinement of 0.55 (4) and 0.45 (4) (for the O atom), and 0.76 (2) and 0.24 (2) (for the butyl group).

Entities:  

Year:  2009        PMID: 21581881      PMCID: PMC2968330          DOI: 10.1107/S1600536809000208

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-iodo-3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives. see: Choi et al. (2007 ▶, 2008 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C15H17IO4S M = 420.25 Monoclinic, a = 10.298 (1) Å b = 15.208 (1) Å c = 11.109 (1) Å β = 100.669 (1)° V = 1709.7 (3) Å3 Z = 4 Mo Kα radiation μ = 2.01 mm−1 T = 100 (2) K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.673, T max = 0.822 8829 measured reflections 3009 independent reflections 2581 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.07 3009 reflections 222 parameters 43 restraints H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.61 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000208/hg2458sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000208/hg2458Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17IO4SF(000) = 832
Mr = 420.25Dx = 1.633 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P_2ynCell parameters from 5617 reflections
a = 10.298 (1) Åθ = 2.3–28.1°
b = 15.208 (1) ŵ = 2.01 mm1
c = 11.109 (1) ÅT = 100 K
β = 100.669 (1)°Block, colorless
V = 1709.7 (3) Å30.20 × 0.20 × 0.10 mm
Z = 4
Bruker SMART CCD diffractometer3009 independent reflections
Radiation source: fine-focus sealed tube2581 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.3°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −11→18
Tmin = 0.673, Tmax = 0.822l = −13→13
8829 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: difference Fourier map
wR(F2) = 0.085H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0408P)2 + 1.6213P] where P = (Fo2 + 2Fc2)/3
3009 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.71 e Å3
43 restraintsΔρmin = −0.61 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
I0.98000 (3)0.639217 (19)0.38449 (3)0.07282 (14)
S0.60101 (8)0.31517 (5)0.45617 (8)0.0460 (2)
O10.4557 (2)0.45536 (17)0.1655 (2)0.0562 (6)
O20.1138 (3)0.3286 (2)0.2161 (3)0.0849 (10)
O3A0.2384 (15)0.4110 (13)0.3619 (13)0.074 (3)0.55 (4)
O3B0.2198 (16)0.4365 (10)0.323 (2)0.075 (4)0.45 (4)
O40.7434 (2)0.29309 (16)0.4707 (2)0.0588 (6)
C10.5648 (3)0.3928 (2)0.3367 (3)0.0411 (7)
C20.6417 (3)0.4674 (2)0.3106 (3)0.0404 (7)
C30.7603 (3)0.5070 (2)0.3653 (3)0.0438 (7)
H30.81190.48430.43840.053*
C40.7992 (3)0.5803 (2)0.3085 (3)0.0520 (8)
C50.7244 (4)0.6150 (3)0.2018 (4)0.0651 (10)
H50.75510.66570.16580.078*
C60.6077 (4)0.5773 (3)0.1483 (3)0.0628 (10)
H60.55550.60090.07600.075*
C70.5693 (3)0.5030 (2)0.2046 (3)0.0492 (8)
C80.4576 (3)0.3885 (2)0.2479 (3)0.0474 (8)
C90.3408 (3)0.3292 (3)0.2250 (4)0.0581 (9)
H9A0.36450.27240.26680.070*
H9B0.31650.31760.13600.070*
C100.2236 (4)0.3677 (3)0.2695 (4)0.0609 (10)
C12−0.1176 (4)0.3369 (5)0.1516 (6)0.121 (2)
H12A−0.11860.27440.12660.145*0.759 (19)
H12B−0.20180.34840.17960.145*0.759 (19)
H12C−0.09300.27480.14150.145*0.241 (19)
H12D−0.20160.34070.18250.145*0.241 (19)
C13−0.1166 (8)0.3909 (7)0.0415 (9)0.180 (4)
H13A−0.03640.37890.00690.216*0.759 (19)
H13B−0.11860.45430.06140.216*0.759 (19)
H13C−0.03450.36870.01780.216*0.241 (19)
H13D−0.09050.44830.08080.216*0.241 (19)
C11A−0.0090 (6)0.3482 (8)0.2583 (7)0.077 (2)0.759 (19)
H11A−0.00770.40930.28940.092*0.759 (19)
H11B−0.02080.30770.32510.092*0.759 (19)
C14A−0.2370 (12)0.3655 (11)−0.0466 (14)0.175 (6)0.759 (19)
H14A−0.30890.4062−0.03920.263*0.759 (19)
H14B−0.26270.3056−0.02860.263*0.759 (19)
H14C−0.21910.3679−0.13010.263*0.759 (19)
C11B−0.0098 (17)0.3900 (18)0.223 (3)0.077 (7)0.241 (19)
H11C−0.02220.39830.30890.093*0.241 (19)
H11D−0.00170.44800.18510.093*0.241 (19)
C14B−0.185 (4)0.424 (3)−0.0790 (17)0.141 (14)0.241 (19)
H14D−0.26810.3920−0.10410.211*0.241 (19)
H14E−0.12840.4149−0.13990.211*0.241 (19)
H14F−0.20340.4869−0.07280.211*0.241 (19)
C150.5826 (5)0.3860 (3)0.5804 (3)0.0654 (10)
H15A0.60710.35410.65790.098*
H15B0.49040.40530.57050.098*
H15C0.64000.43740.58070.098*
U11U22U33U12U13U23
I0.06107 (19)0.0672 (2)0.0881 (2)−0.02167 (12)0.00823 (14)0.01316 (14)
S0.0464 (4)0.0356 (4)0.0542 (5)−0.0007 (3)0.0051 (4)−0.0015 (3)
O10.0494 (13)0.0693 (16)0.0437 (13)0.0025 (12)−0.0075 (10)−0.0056 (12)
O20.0446 (14)0.110 (2)0.097 (2)−0.0015 (15)0.0058 (14)−0.053 (2)
O3A0.072 (5)0.087 (6)0.064 (5)−0.013 (5)0.016 (4)−0.030 (4)
O3B0.069 (5)0.068 (5)0.088 (7)0.000 (4)0.014 (5)−0.030 (5)
O40.0513 (14)0.0568 (15)0.0648 (15)0.0124 (11)0.0019 (11)0.0010 (12)
C10.0395 (16)0.0378 (15)0.0440 (17)0.0028 (13)0.0030 (13)−0.0046 (13)
C20.0405 (16)0.0447 (17)0.0350 (15)0.0049 (13)0.0045 (12)−0.0031 (13)
C30.0431 (17)0.0464 (18)0.0406 (16)0.0009 (14)0.0044 (13)0.0022 (14)
C40.0506 (19)0.052 (2)0.053 (2)−0.0045 (16)0.0100 (15)0.0052 (16)
C50.075 (3)0.062 (2)0.060 (2)−0.003 (2)0.015 (2)0.0218 (19)
C60.069 (2)0.075 (3)0.0423 (19)0.006 (2)0.0048 (17)0.0150 (18)
C70.0499 (19)0.057 (2)0.0394 (17)0.0066 (16)0.0057 (14)−0.0018 (15)
C80.0426 (17)0.0495 (18)0.0475 (18)0.0035 (14)0.0013 (14)−0.0100 (15)
C90.0427 (18)0.057 (2)0.069 (2)0.0006 (16)−0.0049 (16)−0.0229 (18)
C100.051 (2)0.065 (2)0.066 (2)−0.0061 (17)0.0064 (18)−0.0211 (19)
C120.053 (3)0.160 (6)0.149 (6)0.002 (3)0.021 (3)−0.065 (5)
C130.152 (8)0.215 (10)0.166 (9)0.103 (8)0.010 (7)0.029 (8)
C11A0.049 (3)0.095 (6)0.087 (4)0.004 (3)0.016 (3)−0.018 (4)
C14A0.148 (8)0.195 (10)0.167 (9)0.043 (7)−0.010 (7)−0.002 (7)
C11B0.064 (9)0.088 (11)0.084 (11)0.011 (8)0.023 (8)−0.007 (8)
C14B0.142 (16)0.142 (16)0.139 (16)0.015 (10)0.027 (10)0.012 (9)
C150.090 (3)0.058 (2)0.051 (2)0.010 (2)0.022 (2)−0.0034 (18)
I—C42.098 (4)C9—H9B0.9900
I—O4i13.531 (3)C12—C131.476 (11)
S—O41.484 (2)C12—C11B1.480 (2)
S—C11.764 (3)C12—C11A1.481 (2)
S—C151.788 (4)C12—H12A0.9900
O1—C81.366 (4)C12—H12B0.9900
O1—C71.376 (4)C12—H12C0.9900
O2—C101.317 (5)C12—H12D0.9900
O2—C11A1.459 (7)C13—C14B1.4797 (15)
O2—C11B1.59 (3)C13—C14A1.481 (2)
O3A—O3B0.590 (16)C13—H13A0.9900
O3A—C101.205 (5)C13—H13B0.9900
O3B—C101.205 (5)C13—H13C0.9900
C1—C81.339 (4)C13—H13D0.9900
C1—C21.444 (4)C11A—H11A0.9900
C2—C71.383 (4)C11A—H11B0.9900
C2—C31.395 (4)C14A—H14A0.9800
C3—C41.377 (5)C14A—H14B0.9800
C3—H30.9500C14A—H14C0.9800
C4—C51.392 (5)C11B—H11C0.9900
C5—C61.364 (6)C11B—H11D0.9900
C5—H50.9500C14B—H14D0.9800
C6—C71.384 (5)C14B—H14E0.9800
C6—H60.9500C14B—H14F0.9800
C8—C91.486 (5)C15—H15A0.9800
C9—C101.505 (5)C15—H15B0.9800
C9—H9A0.9900C15—H15C0.9800
C4—I—O4i52.14 (10)C11B—C12—H12C113.6
O4—S—C1107.46 (15)C11A—C12—H12C91.8
O4—S—C15107.26 (19)H12B—C12—H12C117.5
C1—S—C1598.03 (17)C13—C12—H12D113.3
C8—O1—C7106.0 (2)C11B—C12—H12D113.4
C10—O2—C11A119.1 (4)C11A—C12—H12D107.1
C10—O2—C11B109.9 (4)H12A—C12—H12D100.9
O3B—O3A—C1075.8 (4)H12C—C12—H12D110.7
O3A—O3B—C1075.8 (4)C12—C13—C14B149.8 (19)
C8—C1—C2107.4 (3)C12—C13—C14A105.6 (10)
C8—C1—S123.5 (3)C12—C13—H13A110.6
C2—C1—S129.1 (2)C14B—C13—H13A90.2
C7—C2—C3119.5 (3)C14A—C13—H13A110.6
C7—C2—C1104.4 (3)C12—C13—H13B110.6
C3—C2—C1136.0 (3)C14B—C13—H13B81.2
C4—C3—C2117.1 (3)C14A—C13—H13B110.6
C4—C3—H3121.5H13A—C13—H13B108.8
C2—C3—H3121.5C12—C13—H13C99.6
C3—C4—C5122.3 (3)C14B—C13—H13C99.4
C3—C4—I118.3 (2)C14A—C13—H13C112.8
C5—C4—I119.4 (3)H13B—C13—H13C116.6
C6—C5—C4121.1 (4)C12—C13—H13D99.6
C6—C5—H5119.4C14B—C13—H13D98.4
C4—C5—H5119.4C14A—C13—H13D130.3
C5—C6—C7116.6 (3)H13A—C13—H13D99.0
C5—C6—H6121.7H13C—C13—H13D104.1
C7—C6—H6121.7O2—C11A—C12106.9 (5)
O1—C7—C2110.8 (3)O2—C11A—H11A110.3
O1—C7—C6125.8 (3)C12—C11A—H11A110.3
C2—C7—C6123.4 (3)O2—C11A—H11B110.3
C1—C8—O1111.4 (3)C12—C11A—H11B110.3
C1—C8—C9133.4 (3)H11A—C11A—H11B108.6
O1—C8—C9115.2 (3)C13—C14A—H14A109.5
C8—C9—C10112.4 (3)C13—C14A—H14B109.5
C8—C9—H9A109.1C13—C14A—H14C109.5
C10—C9—H9A109.1C12—C11B—O2100.4 (12)
C8—C9—H9B109.1C12—C11B—H11C111.7
C10—C9—H9B109.1O2—C11B—H11C111.7
H9A—C9—H9B107.9C12—C11B—H11D111.7
O3A—C10—O2126.3 (7)O2—C11B—H11D111.7
O3B—C10—O2120.6 (9)H11C—C11B—H11D109.5
O3A—C10—C9120.6 (8)C13—C14B—H14D109.5
O3B—C10—C9126.7 (9)C13—C14B—H14E109.5
O2—C10—C9110.5 (3)H14D—C14B—H14E109.5
C13—C12—C11B91.3 (16)C13—C14B—H14F109.5
C13—C12—C11A118.6 (8)H14D—C14B—H14F109.5
C13—C12—H12A107.7H14E—C14B—H14F109.5
C11B—C12—H12A130.0S—C15—H15A109.5
C11A—C12—H12A107.7S—C15—H15B109.5
C13—C12—H12B107.7H15A—C15—H15B109.5
C11B—C12—H12B110.4S—C15—H15C109.5
C11A—C12—H12B107.7H15A—C15—H15C109.5
H12A—C12—H12B107.1H15B—C15—H15C109.5
C13—C12—H12C113.4
O4—S—C1—C8135.5 (3)C7—O1—C8—C10.9 (4)
C15—S—C1—C8−113.5 (3)C7—O1—C8—C9178.5 (3)
O4—S—C1—C2−41.2 (3)C1—C8—C9—C1096.8 (5)
C15—S—C1—C269.8 (3)O1—C8—C9—C10−80.1 (4)
C8—C1—C2—C70.7 (3)O3B—O3A—C10—O2−88 (3)
S—C1—C2—C7177.8 (3)O3B—O3A—C10—C9112 (3)
C8—C1—C2—C3179.9 (4)O3A—O3B—C10—O2111 (3)
S—C1—C2—C3−3.0 (5)O3A—O3B—C10—C9−87 (3)
C7—C2—C3—C4−0.5 (4)C11A—O2—C10—O3A10.1 (16)
C1—C2—C3—C4−179.6 (3)C11B—O2—C10—O3A39 (2)
C2—C3—C4—C50.5 (5)C11A—O2—C10—O3B−23.3 (17)
C2—C3—C4—I−178.0 (2)C11B—O2—C10—O3B6(2)
O4i—I—C4—C355.4 (2)C11A—O2—C10—C9172.1 (6)
O4i—I—C4—C5−123.1 (4)C11B—O2—C10—C9−159.0 (14)
C3—C4—C5—C60.1 (6)C8—C9—C10—O3A−36.2 (13)
I—C4—C5—C6178.6 (3)C8—C9—C10—O3B−2.8 (18)
C4—C5—C6—C7−0.7 (6)C8—C9—C10—O2160.6 (4)
C8—O1—C7—C2−0.4 (4)C11B—C12—C13—C14B−158 (4)
C8—O1—C7—C6−179.7 (3)C11A—C12—C13—C14B−168 (3)
C3—C2—C7—O1−179.6 (3)C11B—C12—C13—C14A−168.6 (12)
C1—C2—C7—O1−0.2 (3)C11A—C12—C13—C14A−179.2 (8)
C3—C2—C7—C6−0.2 (5)C10—O2—C11A—C12150.7 (6)
C1—C2—C7—C6179.1 (3)C11B—O2—C11A—C1273.5 (9)
C5—C6—C7—O1−180.0 (3)C13—C12—C11A—O2−59.2 (10)
C5—C6—C7—C20.8 (6)C11B—C12—C11A—O2−81 (2)
C2—C1—C8—O1−1.0 (4)C13—C12—C11B—O2−98.9 (16)
S—C1—C8—O1−178.3 (2)C11A—C12—C11B—O262 (2)
C2—C1—C8—C9−178.0 (3)C10—O2—C11B—C12176.1 (12)
S—C1—C8—C94.6 (5)C11A—O2—C11B—C12−69.0 (8)
D—H···AD—HH···AD···AD—H···A
C15—H15B···Cgii0.982.973.722 (4)134
C5—H5···O4iii0.952.463.370 (4)160
C9—H9B···O4iv0.992.503.376 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15BCgi0.982.973.722 (4)134
C5—H5⋯O4ii0.952.463.370 (4)160
C9—H9B⋯O4iii0.992.503.376 (4)147

Symmetry codes: (i) ; (ii) ; (iii) . Cg is the centroid of the C2–C7 benzene ring.

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Isopropyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

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Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
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  1 in total

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