Literature DB >> 21581609

Propyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(14)H(15)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran ring system. The crystal structure is stabilized by inter-molecular C-H⋯π inter-actions between an H atom of the propyl methyl-ene group closest to the carboxyl-ate O atom and the benzene ring of a neighbouring mol-ecule, and between an H atom of the outer propyl methyl-ene group and the furan ring of a neighbouring mol-ecule, respectively. Additionally, the crystal structure exhibits inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581609      PMCID: PMC2968065          DOI: 10.1107/S1600536808042359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structures of similar alkyl 2-(5-iodo-3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives. see: Choi et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C14H15IO4S M = 406.22 Triclinic, a = 8.5468 (4) Å b = 10.0329 (5) Å c = 10.3239 (5) Å α = 72.442 (1)° β = 81.345 (1)° γ = 65.088 (1)° V = 765.21 (6) Å3 Z = 2 Mo Kα radiation μ = 2.24 mm−1 T = 293 (2) K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.583, T max = 0.787 6182 measured reflections 2982 independent reflections 2778 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.069 S = 1.18 2982 reflections 183 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.56 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808042359/sj2566sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042359/sj2566Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15IO4SZ = 2
Mr = 406.22F(000) = 400
Triclinic, P1Dx = 1.763 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5468 (4) ÅCell parameters from 4625 reflections
b = 10.0329 (5) Åθ = 2.3–28.3°
c = 10.3239 (5) ŵ = 2.24 mm1
α = 72.442 (1)°T = 293 K
β = 81.345 (1)°Plate, colorless
γ = 65.088 (1)°0.30 × 0.20 × 0.10 mm
V = 765.21 (6) Å3
Bruker SMART CCD diffractometer2982 independent reflections
Radiation source: fine-focus sealed tube2778 reflections with I > 2σ(I)
graphiteRint = 0.016
Detector resolution: 10.0 pixels mm-1θmax = 26.0°, θmin = 2.3°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −12→12
Tmin = 0.583, Tmax = 0.787l = −12→12
6182 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: difference Fourier map
wR(F2) = 0.069H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.0293P)2 + 0.5734P] where P = (Fo2 + 2Fc2)/3
2982 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.56 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.69366 (3)0.79269 (3)0.61486 (2)0.04832 (10)
S0.26183 (10)0.40380 (10)0.96397 (8)0.03932 (18)
O10.1660 (3)0.5368 (2)0.5730 (2)0.0350 (4)
O20.0455 (3)0.1416 (3)0.7355 (3)0.0530 (6)
O30.2911 (3)0.1379 (3)0.7896 (3)0.0567 (7)
O40.2582 (3)0.5257 (3)1.0206 (2)0.0529 (6)
C10.2539 (4)0.4770 (3)0.7857 (3)0.0337 (6)
C20.3414 (4)0.5677 (3)0.6976 (3)0.0303 (6)
C30.4622 (4)0.6215 (3)0.7127 (3)0.0335 (6)
H30.50720.59920.79690.040*
C40.5121 (4)0.7091 (3)0.5973 (3)0.0340 (6)
C50.4466 (4)0.7459 (3)0.4690 (3)0.0387 (7)
H50.48250.80690.39430.046*
C60.3287 (4)0.6913 (3)0.4533 (3)0.0368 (7)
H60.28440.71340.36890.044*
C70.2796 (4)0.6029 (3)0.5682 (3)0.0322 (6)
C80.1529 (4)0.4619 (3)0.7075 (3)0.0330 (6)
C90.0405 (4)0.3755 (3)0.7359 (3)0.0367 (7)
H9A−0.03600.41350.66060.044*
H9B−0.03030.39290.81680.044*
C100.1438 (4)0.2060 (4)0.7564 (3)0.0396 (7)
C110.1272 (5)−0.0221 (4)0.7496 (6)0.0702 (13)
H11A0.1879−0.07470.83430.084*
H11B0.2094−0.04350.67520.084*
C12−0.0126 (6)−0.0740 (5)0.7479 (5)0.0683 (12)
H12A−0.0746−0.01700.66410.082*
H12B0.0396−0.18080.74860.082*
C13−0.1370 (9)−0.0548 (7)0.8641 (6)0.102 (2)
H13A−0.0787−0.11890.94710.154*
H13B−0.2278−0.08290.85360.154*
H13C−0.18500.04970.86700.154*
C140.4798 (5)0.2651 (4)0.9739 (4)0.0539 (9)
H14A0.55720.31590.94440.081*
H14B0.49580.20050.91660.081*
H14C0.50310.20451.06610.081*
U11U22U33U12U13U23
I0.04655 (14)0.04768 (14)0.05934 (16)−0.02881 (11)−0.00540 (10)−0.00948 (10)
S0.0427 (4)0.0487 (4)0.0301 (4)−0.0235 (4)−0.0015 (3)−0.0075 (3)
O10.0358 (11)0.0404 (11)0.0329 (11)−0.0184 (9)−0.0071 (8)−0.0077 (9)
O20.0399 (12)0.0362 (12)0.0874 (19)−0.0165 (10)−0.0083 (12)−0.0177 (12)
O30.0393 (13)0.0466 (14)0.0806 (19)−0.0156 (11)−0.0146 (12)−0.0079 (13)
O40.0619 (16)0.0638 (16)0.0409 (13)−0.0264 (13)−0.0003 (11)−0.0234 (12)
C10.0349 (15)0.0350 (15)0.0336 (15)−0.0152 (13)−0.0026 (12)−0.0098 (12)
C20.0314 (14)0.0304 (14)0.0297 (14)−0.0112 (12)−0.0026 (11)−0.0099 (11)
C30.0360 (15)0.0335 (15)0.0339 (16)−0.0142 (12)−0.0052 (12)−0.0104 (12)
C40.0316 (15)0.0311 (14)0.0419 (16)−0.0131 (12)−0.0016 (12)−0.0119 (13)
C50.0400 (17)0.0335 (15)0.0377 (16)−0.0138 (13)0.0009 (13)−0.0049 (13)
C60.0392 (16)0.0395 (16)0.0301 (15)−0.0150 (13)−0.0048 (12)−0.0062 (13)
C70.0299 (14)0.0311 (14)0.0378 (15)−0.0111 (12)−0.0053 (12)−0.0118 (12)
C80.0339 (15)0.0320 (15)0.0335 (15)−0.0142 (12)−0.0027 (12)−0.0070 (12)
C90.0343 (15)0.0412 (16)0.0410 (17)−0.0188 (13)−0.0023 (13)−0.0134 (13)
C100.0397 (17)0.0422 (17)0.0403 (17)−0.0220 (14)0.0007 (13)−0.0082 (14)
C110.051 (2)0.038 (2)0.122 (4)−0.0153 (17)−0.001 (2)−0.027 (2)
C120.063 (3)0.043 (2)0.105 (4)−0.0231 (19)−0.004 (2)−0.026 (2)
C130.124 (5)0.100 (4)0.111 (5)−0.078 (4)0.044 (4)−0.040 (4)
C140.051 (2)0.055 (2)0.049 (2)−0.0147 (17)−0.0128 (16)−0.0084 (17)
I—C42.102 (3)C6—C71.379 (4)
S—O41.494 (3)C6—H60.9300
S—C11.764 (3)C8—C91.491 (4)
S—C141.790 (4)C9—C101.513 (4)
O1—C71.375 (3)C9—H9A0.9700
O1—C81.378 (3)C9—H9B0.9700
O2—C101.329 (4)C11—C121.495 (6)
O2—C111.458 (4)C11—H11A0.9700
O3—C101.197 (4)C11—H11B0.9700
C1—C81.347 (4)C12—C131.480 (7)
C1—C21.443 (4)C12—H12A0.9700
C2—C31.397 (4)C12—H12B0.9700
C2—C71.399 (4)C13—H13A0.9600
C3—C41.380 (4)C13—H13B0.9600
C3—H30.9300C13—H13C0.9600
C4—C51.400 (4)C14—H14A0.9600
C5—C61.381 (4)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
O4—S—C1106.92 (14)C10—C9—H9A109.1
O4—S—C14106.66 (17)C8—C9—H9B109.1
C1—S—C1498.06 (16)C10—C9—H9B109.1
C7—O1—C8106.0 (2)H9A—C9—H9B107.9
C10—O2—C11116.8 (3)O3—C10—O2124.3 (3)
C8—C1—C2107.3 (3)O3—C10—C9125.7 (3)
C8—C1—S123.9 (2)O2—C10—C9110.0 (3)
C2—C1—S128.7 (2)O2—C11—C12107.4 (3)
C3—C2—C7119.1 (3)O2—C11—H11A110.2
C3—C2—C1136.3 (3)C12—C11—H11A110.2
C7—C2—C1104.6 (2)O2—C11—H11B110.2
C4—C3—C2117.2 (3)C12—C11—H11B110.2
C4—C3—H3121.4H11A—C11—H11B108.5
C2—C3—H3121.4C13—C12—C11113.5 (4)
C3—C4—C5123.1 (3)C13—C12—H12A108.9
C3—C4—I118.6 (2)C11—C12—H12A108.9
C5—C4—I118.3 (2)C13—C12—H12B108.9
C6—C5—C4119.9 (3)C11—C12—H12B108.9
C6—C5—H5120.1H12A—C12—H12B107.7
C4—C5—H5120.1C12—C13—H13A109.5
C7—C6—C5117.2 (3)C12—C13—H13B109.5
C7—C6—H6121.4H13A—C13—H13B109.5
C5—C6—H6121.4C12—C13—H13C109.5
O1—C7—C6125.8 (3)H13A—C13—H13C109.5
O1—C7—C2110.7 (3)H13B—C13—H13C109.5
C6—C7—C2123.6 (3)S—C14—H14A109.5
C1—C8—O1111.4 (3)S—C14—H14B109.5
C1—C8—C9133.3 (3)H14A—C14—H14B109.5
O1—C8—C9115.2 (2)S—C14—H14C109.5
C8—C9—C10112.3 (2)H14A—C14—H14C109.5
C8—C9—H9A109.1H14B—C14—H14C109.5
O4—S—C1—C8−135.7 (3)C3—C2—C7—O1178.3 (2)
C14—S—C1—C8114.1 (3)C1—C2—C7—O1−1.5 (3)
O4—S—C1—C240.8 (3)C3—C2—C7—C6−1.4 (4)
C14—S—C1—C2−69.4 (3)C1—C2—C7—C6178.8 (3)
C8—C1—C2—C3−178.7 (3)C2—C1—C8—O1−0.3 (3)
S—C1—C2—C34.4 (5)S—C1—C8—O1176.8 (2)
C8—C1—C2—C71.0 (3)C2—C1—C8—C9175.8 (3)
S—C1—C2—C7−175.9 (2)S—C1—C8—C9−7.1 (5)
C7—C2—C3—C40.8 (4)C7—O1—C8—C1−0.6 (3)
C1—C2—C3—C4−179.4 (3)C7—O1—C8—C9−177.5 (2)
C2—C3—C4—C50.4 (4)C1—C8—C9—C10−74.2 (4)
C2—C3—C4—I−180.0 (2)O1—C8—C9—C10101.8 (3)
C3—C4—C5—C6−1.2 (5)C11—O2—C10—O3−2.4 (5)
I—C4—C5—C6179.2 (2)C11—O2—C10—C9179.2 (3)
C4—C5—C6—C70.7 (4)C8—C9—C10—O322.6 (5)
C8—O1—C7—C6−179.0 (3)C8—C9—C10—O2−159.0 (3)
C8—O1—C7—C21.3 (3)C10—O2—C11—C12169.5 (4)
C5—C6—C7—O1−179.1 (3)O2—C11—C12—C13−63.9 (6)
C5—C6—C7—C20.6 (4)
D—H···AD—HH···AD···AD—H···A
C11—H11B···Cg1i0.973.123.814 (4)130
C12—H12B···Cg2ii0.972.993.929 (3)162
C3—H3···O4iii0.932.603.468 (4)157
C9—H9B···O4iv0.972.403.356 (4)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11BCg1i0.973.123.814 (4)130
C12—H12BCg2ii0.972.993.929 (3)162
C3—H3⋯O4iii0.932.603.468 (4)157
C9—H9B⋯O4iv0.972.403.356 (4)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 and Cg2 are the centroids of the C2–C7 benzene ring and the C1/C2/C7/O1/C8 furan ring, respectively.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Isopropyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20
  2 in total
  1 in total

1.  3-Methyl-butyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31
  1 in total

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