Literature DB >> 21580895

Dichlorido{2-[3-(dimethyl-ammonio)-propyl-imino-meth-yl]phenolato}zinc(II) hemihydrate.

Xue-Wen Zhu1.   

Abstract

The title complex, [ZnCl(2)(C(12)H(18)N(2)O)]·0.5H(2)O, is a mononuclear zinc(II) compound derived from the zwitterionic form of the Schiff base 2-[3-(dimethyl-amino)propyl-imino-meth-yl]-phenol. The Zn(II) atom is four-coordinated by the imine N and the phenolate O atoms of the Schiff base ligand, and by two chloride ions, in a distorted tetra-hedral coordination geometry. The dimethyl-ammonio group is disordered over two positions with site occupancies of 0.51 (3) and 0.49 (3). In the asymmetric unit, there is also a disordered water mol-ecule with a partial occupancy of 0.5. In the crystal structure, the water mol-ecules are linked to the Schiff base complex mol-ecules through inter-molecular N-H⋯O hydrogen bonds. Mol-ecules are further linked through additional inter-molecular N-H⋯O hydrogen bonds, forming chains running along the b axis.

Entities:  

Year:  2008        PMID: 21580895      PMCID: PMC2959570          DOI: 10.1107/S1600536808033977

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a general background on the chemistry of Schiff base complexes, see: Ali et al. (2008 ▶); Biswas et al. (2008 ▶); Chen et al. (2008 ▶); Darensbourg & Frantz (2007 ▶); Habibi et al. (2007 ▶); Kawamoto et al. (2008 ▶); Lipscomb & Sträter (1996 ▶); Tomat et al. (2007 ▶); Wu et al. (2008 ▶); Yuan et al. (2007 ▶). For related structures, see: Zhu & Yang (2008a ▶,b ▶,c ▶,d ▶); Qiu (2006a ▶,b ▶); Wei et al. (2007 ▶); Zhu et al. (2007 ▶).

Experimental

Crystal data

[ZnCl2(C12H18N2O)]·0.5H2O M = 351.58 Orthorhombic, a = 13.335 (2) Å b = 16.384 (2) Å c = 7.212 (1) Å V = 1575.7 (4) Å3 Z = 4 Mo Kα radiation μ = 1.89 mm−1 T = 298 (2) K 0.23 × 0.23 × 0.22 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.650, T max = 0.661 12635 measured reflections 3426 independent reflections 2915 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.103 S = 1.08 3426 reflections 206 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.40 e Å−3 Absolute structure: Flack (1983 ▶), 1569 Friedel pairs Flack parameter: 0.03 (2) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033977/rz2256sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033977/rz2256Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C12H18N2O)]·0.5H2OF(000) = 724
Mr = 351.58Dx = 1.482 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3872 reflections
a = 13.335 (2) Åθ = 2.4–25.3°
b = 16.384 (2) ŵ = 1.89 mm1
c = 7.212 (1) ÅT = 298 K
V = 1575.7 (4) Å3Block, colorless
Z = 40.23 × 0.23 × 0.22 mm
Bruker APEXII CCD area-detector diffractometer3426 independent reflections
Radiation source: fine-focus sealed tube2915 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −17→17
Tmin = 0.650, Tmax = 0.661k = −20→20
12635 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0381P)2 + 0.643P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
3426 reflectionsΔρmax = 0.42 e Å3
206 parametersΔρmin = −0.40 e Å3
4 restraintsAbsolute structure: Flack (1983), 1569 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.73458 (3)1.10664 (2)1.00222 (10)0.04900 (15)
Cl10.59091 (11)1.09513 (7)1.1550 (2)0.0746 (4)
Cl20.86270 (14)1.03257 (11)1.1229 (3)0.1022 (5)
N10.7159 (3)1.0824 (2)0.7323 (5)0.0449 (7)
O10.7749 (2)1.21988 (16)0.9610 (4)0.0563 (8)
O20.9856 (5)0.9368 (4)0.1435 (12)0.0704 (18)0.50
C10.8128 (3)1.2011 (2)0.6371 (6)0.0488 (9)
C20.8218 (3)1.2425 (2)0.8055 (6)0.0464 (9)
C30.8817 (4)1.3118 (3)0.8081 (9)0.0656 (13)
H30.88971.34010.91890.079*
C40.9288 (4)1.3393 (3)0.6546 (10)0.0783 (16)
H40.96681.38680.66150.094*
C50.9217 (4)1.2989 (3)0.4892 (11)0.0835 (17)
H50.95641.31720.38530.100*
C60.8631 (4)1.2317 (3)0.4807 (8)0.0736 (14)
H60.85581.20490.36780.088*
C70.7537 (3)1.1280 (3)0.6068 (6)0.0506 (10)
H70.74231.11290.48430.061*
C80.6601 (3)1.0080 (2)0.6728 (7)0.0575 (11)
H8A0.59681.00530.73890.069*
H8B0.64551.01170.54130.069*
C90.7184 (4)0.9327 (3)0.7093 (7)0.0674 (13)
H9A0.67480.88580.69470.081*
H9B0.74190.93350.83650.081*
N20.8576 (13)0.8452 (7)0.543 (2)0.055 (4)0.51 (3)
H2C0.80900.80710.52470.066*0.51 (3)
C100.8059 (4)0.9240 (3)0.5831 (9)0.0800 (18)0.51 (3)
H10A0.85700.96080.62960.096*0.51 (3)
H10B0.78490.94560.46410.096*0.51 (3)
C110.9122 (17)0.8214 (9)0.713 (4)0.091 (8)0.51 (3)
H11A0.86830.82570.81760.137*0.51 (3)
H11B0.96870.85690.72960.137*0.51 (3)
H11C0.93510.76610.70080.137*0.51 (3)
C120.9244 (10)0.8403 (9)0.389 (3)0.082 (6)0.51 (3)
H12A0.95230.78640.38160.123*0.51 (3)
H12B0.97750.87930.40360.123*0.51 (3)
H12C0.88830.85190.27650.123*0.51 (3)
N2'0.8443 (12)0.8327 (9)0.641 (4)0.071 (5)0.49 (3)
H2'A0.79700.79700.59980.085*0.49 (3)
C10'0.8059 (4)0.9240 (3)0.5831 (9)0.0800 (18)0.49 (3)
H10C0.85660.96500.60720.096*0.49 (3)
H10D0.78600.92650.45380.096*0.49 (3)
C11'0.8661 (16)0.8106 (11)0.824 (4)0.101 (8)0.49 (3)
H11D0.88120.75340.82880.152*0.49 (3)
H11E0.80910.82200.90100.152*0.49 (3)
H11F0.92280.84130.86680.152*0.49 (3)
C12'0.9351 (17)0.8164 (14)0.534 (6)0.139 (12)0.49 (3)
H12D0.95920.76260.56290.209*0.49 (3)
H12E0.98550.85590.56580.209*0.49 (3)
H12F0.92030.81990.40440.209*0.49 (3)
H2A0.984 (7)0.973 (5)0.228 (11)0.080*0.50
H2B0.930 (4)0.911 (5)0.146 (15)0.080*0.50
U11U22U33U12U13U23
Zn10.0640 (3)0.0390 (2)0.0440 (2)−0.00734 (18)0.0112 (3)−0.0061 (3)
Cl10.0750 (8)0.0720 (8)0.0768 (8)−0.0113 (6)0.0324 (7)−0.0094 (6)
Cl20.1140 (13)0.1004 (11)0.0921 (11)−0.0145 (9)−0.0136 (10)0.0143 (9)
N10.0476 (18)0.0393 (16)0.0478 (18)0.0030 (14)0.0062 (15)−0.0058 (14)
O10.0774 (18)0.0361 (12)0.055 (2)−0.0102 (12)0.0190 (14)−0.0142 (12)
O20.056 (4)0.054 (4)0.102 (6)0.011 (3)0.005 (4)0.015 (4)
C10.052 (2)0.0417 (19)0.053 (2)0.0019 (17)0.0052 (18)0.0038 (18)
C20.051 (2)0.0308 (17)0.058 (2)−0.0004 (16)0.0125 (19)0.0006 (16)
C30.067 (3)0.042 (2)0.088 (4)−0.008 (2)0.011 (3)−0.014 (2)
C40.064 (3)0.048 (2)0.123 (5)−0.009 (2)0.031 (3)0.009 (3)
C50.079 (3)0.072 (3)0.100 (4)0.002 (2)0.041 (4)0.019 (4)
C60.088 (3)0.070 (3)0.063 (3)0.001 (2)0.030 (3)0.010 (3)
C70.062 (3)0.049 (2)0.041 (2)−0.0007 (18)0.0022 (19)−0.0092 (19)
C80.059 (3)0.046 (2)0.068 (3)−0.0111 (19)0.001 (2)−0.018 (2)
C90.098 (4)0.043 (2)0.061 (3)−0.021 (2)−0.006 (3)−0.010 (2)
N20.070 (7)0.026 (3)0.069 (9)−0.004 (3)−0.020 (7)−0.001 (5)
C100.078 (3)0.037 (2)0.124 (5)−0.002 (2)−0.008 (3)−0.020 (3)
C110.085 (14)0.052 (7)0.136 (19)0.000 (7)−0.051 (14)0.024 (9)
C120.072 (8)0.049 (7)0.125 (14)0.020 (5)0.017 (9)−0.028 (7)
N2'0.067 (8)0.044 (7)0.101 (14)0.004 (5)−0.006 (9)−0.029 (8)
C10'0.078 (3)0.037 (2)0.124 (5)−0.002 (2)−0.008 (3)−0.020 (3)
C11'0.094 (12)0.051 (8)0.16 (2)0.014 (8)−0.054 (13)−0.027 (10)
C12'0.094 (12)0.127 (16)0.20 (4)0.010 (12)0.068 (19)−0.002 (19)
Zn1—O11.954 (3)C9—C101.487 (8)
Zn1—N12.003 (4)C9—H9A0.9700
Zn1—Cl12.2182 (13)C9—H9B0.9700
Zn1—Cl22.2692 (18)N2—C121.430 (19)
N1—C71.277 (6)N2—C111.47 (2)
N1—C81.491 (5)N2—C101.491 (15)
O1—C21.336 (5)N2—H2C0.9100
O2—H2A0.852 (10)C10—H10A0.9700
O2—H2B0.848 (10)C10—H10B0.9700
C1—C21.396 (6)C11—H11A0.9600
C1—C61.405 (6)C11—H11B0.9600
C1—C71.451 (6)C11—H11C0.9600
C2—C31.389 (6)C12—H12A0.9600
C3—C41.350 (8)C12—H12B0.9600
C3—H30.9300C12—H12C0.9600
C4—C51.368 (9)N2'—C11'1.40 (3)
C4—H40.9300N2'—C12'1.46 (2)
C5—C61.352 (7)N2'—H2'A0.9100
C5—H50.9300C11'—H11D0.9600
C6—H60.9300C11'—H11E0.9600
C7—H70.9300C11'—H11F0.9600
C8—C91.481 (7)C12'—H12D0.9600
C8—H8A0.9700C12'—H12E0.9600
C8—H8B0.9700C12'—H12F0.9600
O1—Zn1—N194.29 (13)C10—C9—H9B109.1
O1—Zn1—Cl1113.19 (9)H9A—C9—H9B107.8
N1—Zn1—Cl1111.04 (11)C12—N2—C11108.9 (14)
O1—Zn1—Cl2111.03 (11)C12—N2—C10119.2 (9)
N1—Zn1—Cl2111.10 (11)C11—N2—C10107.3 (12)
Cl1—Zn1—Cl2114.48 (7)C12—N2—H2C106.9
C7—N1—C8118.1 (4)C11—N2—H2C106.9
C7—N1—Zn1121.6 (3)C10—N2—H2C106.9
C8—N1—Zn1120.3 (3)C9—C10—N2124.4 (8)
C2—O1—Zn1121.3 (2)C9—C10—H10A106.2
H2A—O2—H2B108 (3)N2—C10—H10A106.2
C2—C1—C6119.0 (4)C9—C10—H10B106.2
C2—C1—C7125.4 (4)N2—C10—H10B106.2
C6—C1—C7115.6 (4)H10A—C10—H10B106.4
O1—C2—C3119.0 (4)N2—C11—H11A109.5
O1—C2—C1123.7 (3)N2—C11—H11B109.5
C3—C2—C1117.2 (4)H11A—C11—H11B109.5
C4—C3—C2122.0 (5)N2—C11—H11C109.5
C4—C3—H3119.0H11A—C11—H11C109.5
C2—C3—H3119.0H11B—C11—H11C109.5
C3—C4—C5121.4 (5)N2—C12—H12A109.5
C3—C4—H4119.3N2—C12—H12B109.5
C5—C4—H4119.3H12A—C12—H12B109.5
C6—C5—C4118.3 (5)N2—C12—H12C109.5
C6—C5—H5120.8H12A—C12—H12C109.5
C4—C5—H5120.8H12B—C12—H12C109.5
C5—C6—C1122.0 (6)C11'—N2'—C12'106.1 (19)
C5—C6—H6119.0C11'—N2'—H2'A106.6
C1—C6—H6119.0C12'—N2'—H2'A106.6
N1—C7—C1126.2 (4)N2'—C11'—H11D109.5
N1—C7—H7116.9N2'—C11'—H11E109.5
C1—C7—H7116.9H11D—C11'—H11E109.5
C9—C8—N1111.5 (4)N2'—C11'—H11F109.5
C9—C8—H8A109.3H11D—C11'—H11F109.5
N1—C8—H8A109.3H11E—C11'—H11F109.5
C9—C8—H8B109.3N2'—C12'—H12D109.5
N1—C8—H8B109.3N2'—C12'—H12E109.5
H8A—C8—H8B108.0H12D—C12'—H12E109.5
C8—C9—C10112.6 (4)N2'—C12'—H12F109.5
C8—C9—H9A109.1H12D—C12'—H12F109.5
C10—C9—H9A109.1H12E—C12'—H12F109.5
C8—C9—H9B109.1
D—H···AD—HH···AD···AD—H···A
N2'—H2'A···O1i0.911.882.762 (14)164
N2—H2C···O1i0.911.872.773 (12)170
Table 1

Selected bond lengths (Å)

Zn1—O11.954 (3)
Zn1—N12.003 (4)
Zn1—Cl12.2182 (13)
Zn1—Cl22.2692 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2′—H2′A⋯O1i0.911.882.762 (14)164
N2—H2C⋯O1i0.911.872.773 (12)170

Symmetry code: (i) .

  14 in total

1.  Stabilization of a helical water chain in a metal-organic host of a trinuclear Schiff base complex.

Authors:  Chaitali Biswas; Michael G B Drew; Ashutosh Ghosh
Journal:  Inorg Chem       Date:  2008-05-06       Impact factor: 5.165

2.  Synthesis and characterization of luminescent zinc(II) and cadmium(II) complexes with N,S-chelating Schiff base ligands.

Authors:  Tatsuya Kawamoto; Masato Nishiwaki; Yasutaka Tsunekawa; Koichi Nozaki; Takumi Konno
Journal:  Inorg Chem       Date:  2008-03-18       Impact factor: 5.165

3.  Dibromido[N-propyl-N'-(2-pyridylmethyl-idene)ethane-1,2-diamine]zinc(II).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

4.  Dibromido{(E)-2-eth-oxy-6-[3-(methyl-ammonio)propyl-iminometh-yl]phenol-ato}zinc(II).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

5.  Dichloridobis(2-{1-[2-(1H-indol-3-yl)ethyl-iminio]eth-yl}phenolate-κO)zinc(II)-2-{1-[2-(1H-indol-3-yl)ethyl-iminio]eth-yl}phenolate (1/2).

Authors:  Hapipah M Ali; Mohamed Ibrahim Mohamed Mustafa; Mohd Razali Rizal; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

6.  Azide-bridged one-dimensional Mn(III) polymers: effects of side group of Schiff base ligands on structure and magnetism.

Authors:  Mei Yuan; Fei Zhao; Wen Zhang; Zhe-Ming Wang; Song Gao
Journal:  Inorg Chem       Date:  2007-11-22       Impact factor: 5.165

7.  Coordination chemistry of a pi-extended, rigid and redox-active tetrathiafulvalene-fused Schiff-base ligand.

Authors:  Jin-Cai Wu; Shi-Xia Liu; Tony D Keene; Antonia Neels; Valeriu Mereacre; Annie K Powell; Silvio Decurtins
Journal:  Inorg Chem       Date:  2008-04-21       Impact factor: 5.165

8.  Binuclear fluoro-bridged zinc and cadmium complexes of a schiff base expanded porphyrin: fluoride abstraction from the tetrafluoroborate anion.

Authors:  Elisa Tomat; Luciano Cuesta; Vincent M Lynch; Jonathan L Sessler
Journal:  Inorg Chem       Date:  2007-07-14       Impact factor: 5.165

9.  Bis{(E)-2-eth-oxy-6-[2-(ethyl-ammonio)ethyl-iminometh-yl]phenolato}nickel(II) bis(perchlorate).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

10.  {(E)-2-[3-(Dimethyl-ammonio)propyl-iminometh-yl]phenolato}diiodidozinc(II).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31
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  8 in total

1.  {4-Bromo-2-[2-(piperidin-1-ium-1yl)ethyl-iminometh-yl]phenolato}diiodido-zinc(II).

Authors:  Xue-Wen Zhu; Zhi-Gang Yin; Gang-Sen Li; Xu-Zhao Yang; Chun-Xia Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

2.  {4-Bromo-2-[3-(diethyl-ammonio)propyl-imino-meth-yl]phenolato}diiodidozinc(II) methanol solvate.

Authors:  Xue-Wen Zhu; Zhi-Gang Yin; Xu-Zhao Yang; Gang-Sen Li; Chun-Xia Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  Diiodido{4-nitro-2-[2-(piperidin-1-yl)ethyl-imino-meth-yl]phenolato}zinc(II).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang; Chun-Xia Zhang; Gang-Sen Li; Zhi-Gang Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

4.  Dichlorido{2-[2-(dimethyl-ammonio)ethyl-imino-meth-yl]-6-methoxy-phenolato}zinc(II).

Authors:  Amitabha Datta; Nien-Tsu Chuang; Jui-Hsien Huang; Hon Man Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-22

5.  Diiodido[N'-(2-methoxy-benzyl-idene)-N,N-dimethyl-ethane-1,2-diamine]zinc(II).

Authors:  Xue-Wen Zhu; Zhi-Gang Yin; Chun-Xia Zhang; Xu-Zhao Yang; Gang-Sen Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

6.  Dichlorido(2-{[3-(morpholin-4-ium-4-yl)prop-yl]imino-meth-yl}phenolate)zinc.

Authors:  Nurul Azimah Ikmal Hisham; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

7.  Dichlorido[2-({[3-(cyclo-hexyl-aza-nium-yl)prop-yl]imino}-meth-yl)-5-meth-oxy-phenolate]zinc.

Authors:  Chen-Yi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13

8.  A triclinic polymorph of dichlorido(2-{[2-(isopropyl-ammonio)-eth-yl]imino-methyl-κN}-5-meth-oxy-phenolato-κO(1))zinc.

Authors:  Ai-Tian Pei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-13
  8 in total

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