Literature DB >> 21580457

N'-[1-(5-Bromo-2-hydroxy-phen-yl)ethyl-idene]-3,4,5-trihydroxy-benzohydrazide dimethyl sulfoxide solvate trihydrate.

Nura Suleiman Gwaram, Hamid Khaledi, Hapipah Mohd Ali, Ward T Robinson, Mahmood A Abdulla.   

Abstract

The benzohydrazide mol-ecule in the title compound, C(15)H(13)BrN(2)O(5)·C(2)H(6)OS·3H(2)O, is almost planar with an r.m.s. deviation for the non-H atoms of 0.078 Å. The organic mol-ecules, water and dimethyl sulfoxide solvent mol-ecules are linked by N-H⋯O, O-H⋯O and O-H⋯S inter-molecular hydrogen bonds, forming zigzag chains along the a axis. Intra-molecular O-H⋯O and O-H⋯N hydrogen bonds also occur.

Entities:  

Year:  2010        PMID: 21580457      PMCID: PMC2983555          DOI: 10.1107/S1600536810007002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of 3,4,5-trihydroxy­benzoic acid (gallic acid) derivatives, see: Arunkumar et al. (2006 ▶); Saxena et al. (2008 ▶). For the crystal structures of Schiff bases derived from 3,4,5-trihydroxy­benzoyl­hydrazide, see: Abdul Alhadi et al. (2009 ▶); Khaledi et al. (2009 ▶).

Experimental

Crystal data

C15H13BrN2O5·C2H6OS·3H2O M = 513.36 Monoclinic, a = 21.5690 (15) Å b = 7.0302 (4) Å c = 28.4771 (18) Å β = 103.061 (2)° V = 4206.4 (5) Å3 Z = 8 Mo Kα radiation μ = 2.11 mm−1 T = 100 K 0.26 × 0.03 × 0.03 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.610, T max = 0.940 9543 measured reflections 3694 independent reflections 3052 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.066 S = 1.02 3694 reflections 307 parameters 11 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810007002/hg2645sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007002/hg2645Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13BrN2O5·C2H6OS·3H2OF(000) = 2112
Mr = 513.36Dx = 1.621 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3053 reflections
a = 21.5690 (15) Åθ = 2.7–27.9°
b = 7.0302 (4) ŵ = 2.11 mm1
c = 28.4771 (18) ÅT = 100 K
β = 103.061 (2)°Needle, colourless
V = 4206.4 (5) Å30.26 × 0.03 × 0.03 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer3694 independent reflections
Radiation source: fine-focus sealed tube3052 reflections with I > 2σ(I)
graphiteRint = 0.030
phi and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −25→25
Tmin = 0.610, Tmax = 0.940k = −8→5
9543 measured reflectionsl = −33→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.066H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0311P)2 + 3.5353P] where P = (Fo2 + 2Fc2)/3
3694 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 0.34 e Å3
11 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.525034 (11)1.15033 (4)1.066977 (9)0.01977 (9)
S0.15785 (3)0.18073 (10)0.73419 (2)0.02470 (17)
O10.25101 (8)1.0736 (3)1.07882 (6)0.0201 (4)
H10.2293 (12)1.052 (4)1.0519 (7)0.030*
O20.78049 (8)0.7413 (3)0.83940 (6)0.0205 (4)
H2A0.7527 (12)0.791 (4)0.8174 (8)0.031*
H2B0.7763 (14)0.801 (4)0.8636 (8)0.031*
O30.12345 (8)0.6895 (3)0.77600 (6)0.0193 (4)
H3A0.1436 (13)0.590 (3)0.7769 (11)0.029*
H3B0.1157 (13)0.721 (4)0.7481 (7)0.029*
O40.19398 (10)0.9307 (3)0.84748 (7)0.0382 (5)
H4A0.2210 (14)1.012 (4)0.8408 (12)0.057*
H4B0.1779 (16)0.866 (4)0.8207 (9)0.057*
O90.11275 (8)0.9528 (3)1.00576 (6)0.0188 (4)
O100.18508 (9)0.3495 (3)0.76525 (6)0.0288 (5)
O120.00733 (8)0.7056 (3)0.80056 (6)0.0302 (5)
H120.0426 (10)0.702 (5)0.7930 (11)0.045*
O13−0.10287 (8)0.7412 (3)0.82391 (6)0.0210 (4)
H13−0.1337 (11)0.749 (4)0.8352 (10)0.032*
O14−0.11122 (8)0.8463 (3)0.91444 (6)0.0213 (4)
H14−0.1073 (14)0.900 (4)0.9405 (7)0.032*
N10.22497 (9)0.9902 (3)0.99005 (7)0.0148 (5)
N20.17589 (9)0.9350 (3)0.95289 (7)0.0146 (5)
H2N0.1813 (11)0.933 (4)0.9235 (5)0.018*
C10.31207 (11)1.0888 (4)1.07379 (8)0.0156 (5)
C20.35764 (12)1.1406 (4)1.11456 (9)0.0186 (6)
H20.34521.16181.14410.022*
C30.42073 (11)1.1617 (4)1.11280 (9)0.0175 (6)
H30.45161.19921.14070.021*
C40.43828 (11)1.1272 (3)1.06974 (9)0.0156 (5)
C50.39418 (11)1.0743 (3)1.02900 (9)0.0150 (5)
H50.40741.05230.99980.018*
C60.32987 (11)1.0524 (3)1.02996 (8)0.0135 (5)
C70.28342 (11)0.9907 (3)0.98599 (8)0.0143 (5)
C80.30638 (12)0.9305 (4)0.94239 (9)0.0199 (6)
H8A0.27130.87160.91900.030*
H8B0.34110.83860.95190.030*
H8C0.32181.04200.92780.030*
C90.11782 (11)0.9227 (3)0.96425 (9)0.0148 (5)
C100.06185 (11)0.8702 (3)0.92563 (8)0.0131 (5)
C110.06462 (11)0.8147 (4)0.87924 (8)0.0157 (6)
H110.10450.80870.87030.019*
C120.00928 (12)0.7683 (4)0.84614 (8)0.0172 (6)
C13−0.04955 (11)0.7827 (4)0.85844 (8)0.0146 (5)
C14−0.05204 (11)0.8373 (4)0.90472 (8)0.0142 (5)
C150.00347 (11)0.8764 (3)0.93839 (9)0.0145 (5)
H150.00170.90780.97050.017*
C160.07421 (15)0.1949 (6)0.72909 (17)0.0685 (13)
H16A0.06450.16260.76010.103*
H16B0.05250.10530.70440.103*
H16C0.05960.32440.71990.103*
C170.15995 (19)0.2421 (5)0.67432 (11)0.0490 (10)
H17A0.13870.36480.66610.074*
H17B0.13800.14410.65220.074*
H17C0.20430.25140.67150.074*
U11U22U33U12U13U23
Br0.01221 (13)0.01949 (15)0.02680 (15)−0.00176 (11)0.00269 (10)−0.00108 (12)
S0.0249 (4)0.0245 (4)0.0222 (4)0.0041 (3)0.0002 (3)−0.0006 (3)
O10.0126 (9)0.0320 (11)0.0155 (9)−0.0023 (8)0.0028 (7)−0.0048 (9)
O20.0159 (10)0.0290 (12)0.0152 (9)0.0006 (8)0.0008 (8)−0.0027 (8)
O30.0213 (10)0.0236 (11)0.0122 (9)0.0033 (8)0.0024 (8)0.0000 (8)
O40.0409 (13)0.0487 (15)0.0254 (11)−0.0210 (11)0.0085 (10)−0.0066 (11)
O90.0167 (9)0.0261 (11)0.0130 (9)−0.0026 (8)0.0022 (7)−0.0036 (8)
O100.0270 (10)0.0291 (11)0.0246 (10)0.0053 (9)−0.0059 (8)−0.0063 (9)
O120.0153 (9)0.0640 (15)0.0116 (9)−0.0023 (10)0.0038 (8)−0.0127 (9)
O130.0102 (9)0.0382 (12)0.0145 (9)−0.0028 (9)0.0025 (7)−0.0065 (9)
O140.0132 (8)0.0364 (12)0.0155 (9)−0.0028 (8)0.0058 (7)−0.0116 (9)
N10.0130 (11)0.0138 (11)0.0153 (11)−0.0025 (9)−0.0017 (8)−0.0010 (9)
N20.0137 (10)0.0193 (12)0.0102 (10)−0.0011 (9)0.0011 (8)−0.0016 (10)
C10.0152 (13)0.0142 (13)0.0168 (13)−0.0005 (10)0.0021 (10)0.0012 (11)
C20.0199 (13)0.0199 (14)0.0160 (13)−0.0009 (12)0.0040 (10)−0.0032 (12)
C30.0174 (13)0.0161 (14)0.0155 (12)−0.0001 (11)−0.0036 (10)−0.0021 (11)
C40.0116 (12)0.0113 (13)0.0236 (14)−0.0015 (10)0.0033 (10)0.0012 (11)
C50.0182 (13)0.0113 (13)0.0161 (13)−0.0006 (11)0.0053 (10)0.0016 (11)
C60.0161 (12)0.0098 (13)0.0138 (12)0.0018 (11)0.0020 (10)0.0010 (10)
C70.0168 (13)0.0124 (13)0.0126 (12)0.0007 (10)0.0009 (10)0.0013 (10)
C80.0169 (13)0.0268 (15)0.0157 (13)−0.0021 (12)0.0028 (11)−0.0017 (12)
C90.0162 (13)0.0096 (13)0.0182 (13)0.0012 (11)0.0031 (10)0.0018 (11)
C100.0148 (12)0.0088 (13)0.0152 (12)0.0000 (10)0.0021 (10)0.0013 (11)
C110.0129 (12)0.0210 (15)0.0143 (12)0.0021 (11)0.0053 (10)0.0001 (11)
C120.0195 (13)0.0204 (14)0.0116 (12)0.0007 (11)0.0034 (10)−0.0012 (11)
C130.0123 (12)0.0174 (14)0.0127 (12)−0.0004 (10)−0.0003 (10)0.0004 (11)
C140.0137 (12)0.0131 (13)0.0166 (12)−0.0017 (11)0.0051 (10)−0.0011 (11)
C150.0163 (12)0.0149 (14)0.0127 (12)−0.0004 (11)0.0039 (10)−0.0033 (11)
C160.0242 (18)0.065 (3)0.112 (4)−0.0043 (18)0.007 (2)−0.042 (3)
C170.084 (3)0.034 (2)0.0243 (16)−0.009 (2)0.0029 (17)−0.0009 (15)
Br—C41.898 (2)C2—H20.9500
S—O101.516 (2)C3—C41.384 (3)
S—C171.769 (3)C3—H30.9500
S—C161.780 (3)C4—C51.375 (3)
O1—C11.361 (3)C5—C61.402 (3)
O1—H10.818 (17)C5—H50.9500
O2—H2A0.839 (17)C6—C71.481 (3)
O2—H2B0.830 (17)C7—C81.498 (3)
O3—H3A0.823 (17)C8—H8A0.9800
O3—H3B0.804 (17)C8—H8B0.9800
O4—H4A0.867 (18)C8—H8C0.9800
O4—H4B0.889 (18)C9—C101.484 (3)
O9—C91.230 (3)C10—C151.388 (3)
O12—C121.363 (3)C10—C111.391 (3)
O12—H120.837 (18)C11—C121.383 (3)
O13—C131.365 (3)C11—H110.9500
O13—H130.803 (17)C12—C131.394 (3)
O14—C141.368 (3)C13—C141.385 (3)
O14—H140.821 (17)C14—C151.382 (3)
N1—C71.292 (3)C15—H150.9500
N1—N21.373 (3)C16—H16A0.9800
N2—C91.365 (3)C16—H16B0.9800
N2—H2N0.870 (10)C16—H16C0.9800
C1—C21.389 (3)C17—H17A0.9800
C1—C61.410 (3)C17—H17B0.9800
C2—C31.381 (3)C17—H17C0.9800
O10—S—C17106.27 (14)H8A—C8—H8B109.5
O10—S—C16104.83 (14)C7—C8—H8C109.5
C17—S—C1698.9 (2)H8A—C8—H8C109.5
C1—O1—H1106 (2)H8B—C8—H8C109.5
H2A—O2—H2B103 (3)O9—C9—N2120.2 (2)
H3A—O3—H3B105 (3)O9—C9—C10121.4 (2)
H4A—O4—H4B107 (3)N2—C9—C10118.4 (2)
C12—O12—H12115 (2)C15—C10—C11119.6 (2)
C13—O13—H13110 (2)C15—C10—C9115.6 (2)
C14—O14—H14107 (2)C11—C10—C9124.8 (2)
C7—N1—N2122.0 (2)C12—C11—C10119.8 (2)
C9—N2—N1115.11 (19)C12—C11—H11120.1
C9—N2—H2N123.8 (17)C10—C11—H11120.1
N1—N2—H2N119.9 (17)O12—C12—C11124.2 (2)
O1—C1—C2116.8 (2)O12—C12—C13115.4 (2)
O1—C1—C6122.9 (2)C11—C12—C13120.4 (2)
C2—C1—C6120.3 (2)O13—C13—C14122.5 (2)
C3—C2—C1121.0 (2)O13—C13—C12118.0 (2)
C3—C2—H2119.5C14—C13—C12119.5 (2)
C1—C2—H2119.5O14—C14—C15123.5 (2)
C2—C3—C4118.8 (2)O14—C14—C13116.4 (2)
C2—C3—H3120.6C15—C14—C13120.1 (2)
C4—C3—H3120.6C14—C15—C10120.5 (2)
C5—C4—C3121.3 (2)C14—C15—H15119.8
C5—C4—Br119.25 (18)C10—C15—H15119.8
C3—C4—Br119.44 (18)S—C16—H16A109.5
C4—C5—C6120.8 (2)S—C16—H16B109.5
C4—C5—H5119.6H16A—C16—H16B109.5
C6—C5—H5119.6S—C16—H16C109.5
C5—C6—C1117.8 (2)H16A—C16—H16C109.5
C5—C6—C7119.9 (2)H16B—C16—H16C109.5
C1—C6—C7122.3 (2)S—C17—H17A109.5
N1—C7—C6114.4 (2)S—C17—H17B109.5
N1—C7—C8125.8 (2)H17A—C17—H17B109.5
C6—C7—C8119.8 (2)S—C17—H17C109.5
C7—C8—H8A109.5H17A—C17—H17C109.5
C7—C8—H8B109.5H17B—C17—H17C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.82 (2)1.80 (2)2.531 (3)149 (3)
O1—H1···O90.82 (2)2.65 (2)3.338 (2)142 (3)
O2—H2A···O10i0.84 (2)1.88 (2)2.703 (2)168 (3)
O2—H2A···Si0.84 (2)2.86 (2)3.5458 (19)140 (2)
O2—H2B···O1ii0.83 (2)2.06 (2)2.880 (2)169 (3)
O3—H3A···O100.82 (2)1.97 (2)2.785 (3)169 (3)
O3—H3B···O13iii0.80 (2)2.01 (2)2.802 (2)168 (3)
O4—H4A···O2iv0.87 (2)2.07 (2)2.915 (3)166 (3)
O4—H4B···O30.89 (2)1.96 (2)2.817 (3)160 (3)
O12—H12···O30.84 (2)1.91 (2)2.751 (2)179 (3)
O13—H13···O2v0.80 (2)1.88 (2)2.651 (2)160 (3)
O13—H13···O140.80 (2)2.30 (3)2.727 (2)114 (2)
O14—H14···O9vi0.82 (2)1.87 (2)2.682 (2)169 (3)
N2—H2N···O40.87 (1)2.24 (1)3.113 (3)179 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.82 (2)1.80 (2)2.531 (3)149 (3)
O1—H1⋯O90.82 (2)2.65 (2)3.338 (2)142 (3)
O2—H2A⋯O10i0.84 (2)1.88 (2)2.703 (2)168 (3)
O2—H2A⋯Si0.84 (2)2.86 (2)3.5458 (19)140 (2)
O2—H2B⋯O1ii0.83 (2)2.06 (2)2.880 (2)169 (3)
O3—H3A⋯O100.82 (2)1.97 (2)2.785 (3)169 (3)
O3—H3B⋯O13iii0.80 (2)2.01 (2)2.802 (2)168 (3)
O4—H4A⋯O2iv0.87 (2)2.07 (2)2.915 (3)166 (3)
O4—H4B⋯O30.89 (2)1.96 (2)2.817 (3)160 (3)
O12—H12⋯O30.84 (2)1.91 (2)2.751 (2)179 (3)
O13—H13⋯O2v0.80 (2)1.88 (2)2.651 (2)160 (3)
O13—H13⋯O140.80 (2)2.30 (3)2.727 (2)114 (2)
O14—H14⋯O9vi0.82 (2)1.87 (2)2.682 (2)169 (3)
N2—H2N⋯O40.87 (1)2.24 (1)3.113 (3)179 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  4 in total

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Authors:  George M Sheldrick
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2.  N'-[(5-Chloro-1H-indol-3-yl)methyl-ene]-3,4,5-trihydroxy-benzohydrazide.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
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3.  Gallic acid-based indanone derivatives as anticancer agents.

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Journal:  Bioorg Med Chem Lett       Date:  2008-06-14       Impact factor: 2.823

4.  N'-(5-Chloro-2-hydroxy-benzyl-idene)-3,4,5-trihydroxy-benzohydrazide dihydrate.

Authors:  Abeer A Abdul Alhadi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28
  4 in total
  14 in total

1.  2-Hydr-oxy-N'-(2-hydr-oxy-3-meth-oxy-5-nitro-benzyl-idene)-3-methyl-benzo-hydrazide.

Authors:  You-Yue Han; Yong-Hong Li; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-14

2.  N'-(2-Chloro-benzyl-idene)-2-hydr-oxy-3-methyl-benzohydrazide.

Authors:  You-Yue Han; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

3.  N'-(2,4-Dichloro-benzyl-idene)-2-hydr-oxy-3-methyl-benzohydrazide.

Authors:  You-Yue Han; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

4.  2,4-Dihydr-oxy-N'-(2-hydr-oxy-4-methoxy-benzyl-idene)benzohydrazide.

Authors:  You-Yue Han; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

5.  N'-(2-Hy-droxy-1-naphth-yl-methylidene)-3-meth-oxy-benzohydrazide.

Authors:  Zhi-Xi Hang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

6.  N'-(2,5-Dihydroxy-benzyl-idene)-2-hydr-oxy-3-methyl-benzohydrazide.

Authors:  You-Yue Han; Yong-Hong Li; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17

7.  (E)-2,4-Dihydr-oxy-N'-(2-hydr-oxy-3-meth-oxy-5-nitro-benzyl-idene)benzohydrazide dihydrate.

Authors:  You-Yue Han; Yong-Hong Li; Qiu-Rong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-14

8.  N'-[(2-Methoxynaphthalen-1-yl)methyl-idene]-4-methyl-benzohydrazide.

Authors:  Xu-Feng Meng; Dong-Yue Wang; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

9.  N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-nitro-benzohydrazide methanol monosolvate.

Authors:  Wei-Hua Liu; Shuang-Ju Song; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

10.  2-Fluoro-N'-[(2-hydroxynaphthalen-1-yl)methylidene]benzohydrazide.

Authors:  Dong-Yue Wang; Xu-Feng Meng; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03
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