Literature DB >> 21579139

(E)-2,4-Dihydr-oxy-N'-(2-hydr-oxy-3-meth-oxy-5-nitro-benzyl-idene)benzohydrazide dihydrate.

You-Yue Han1, Yong-Hong Li, Qiu-Rong Zhao.   

Abstract

The asymmetric unit of the title compound, C(15)H(13)N(3)O(7)·2H(2)O, consists of a hydrazone mol-ecule and two solvent water mol-ecules. The mol-ecule adopts an E configuration with respect to the C=N bond. It is relatively planar, with a dihedral angle between the two benzene rings of 2.6 (1)°. There are intra-molecular O-H⋯N and O-H⋯O hydrogen bonds in the hydrazone mol-ecule. In the crystal structure, symmetry-related mol-ecules are linked through inter-molecular N-H⋯O and O-H⋯O hydrogen bonds to form a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579139      PMCID: PMC2979277          DOI: 10.1107/S1600536810013000

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of hydrazone compounds, see: Patil et al. (2010 ▶); Cukurovali et al. (2006 ▶). For the crystal structures of hydrazone compounds, see: Mohd Lair et al. (2009 ▶); Lin & Sang (2009 ▶); Suleiman Gwaram et al. (2010 ▶). For the hydrazone compounds we have reported on recently, see: Han & Zhao (2010a ▶,b ▶). For bond-length data, see: Allen et al. (1987 ▶). For the crystal structures of similar compounds, see: Li & Ban (2009 ▶); Lo & Ng (2009 ▶); Ning & Xu (2009 ▶); Zhu et al. (2009 ▶).

Experimental

Crystal data

C15H13N3O7·2H2O M = 383.32 Triclinic, a = 7.976 (2) Å b = 9.325 (2) Å c = 11.547 (3) Å α = 95.43 (2)° β = 96.21 (2)° γ = 102.01 (2)° V = 829.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.23 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.971, T max = 0.975 11747 measured reflections 4268 independent reflections 1790 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.143 S = 0.94 4268 reflections 263 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810013000/su2173sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013000/su2173Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O7·2H2OZ = 2
Mr = 383.32F(000) = 400
Triclinic, P1Dx = 1.536 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.976 (2) ÅCell parameters from 1898 reflections
b = 9.325 (2) Åθ = 2.6–25.6°
c = 11.547 (3) ŵ = 0.13 mm1
α = 95.43 (2)°T = 298 K
β = 96.21 (2)°Block, colourless
γ = 102.01 (2)°0.23 × 0.20 × 0.20 mm
V = 829.0 (4) Å3
Bruker SMART CCD area-detector diffractometer4268 independent reflections
Radiation source: fine-focus sealed tube1790 reflections with I > 2σ(I)
graphiteRint = 0.045
ω scansθmax = 29.2°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.971, Tmax = 0.975k = −12→12
11747 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H atoms treated by a mixture of independent and constrained refinement
S = 0.94w = 1/[σ2(Fo2) + (0.0611P)2] where P = (Fo2 + 2Fc2)/3
4268 reflections(Δ/σ)max = 0.001
263 parametersΔρmax = 0.16 e Å3
7 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8600 (2)0.84330 (17)1.02241 (12)0.0573 (5)
H10.86270.78141.06810.086*
O20.6371 (2)0.89359 (17)0.64100 (13)0.0605 (5)
H20.56360.85190.58630.091*
O30.4100 (2)0.68584 (17)0.52377 (12)0.0534 (4)
O40.0820 (2)0.45944 (17)0.28656 (12)0.0534 (4)
H40.14600.48120.34910.080*
O5−0.3563 (2)−0.1600 (2)0.34555 (17)0.0764 (6)
O6−0.4541 (2)−0.1357 (2)0.16969 (16)0.0838 (6)
O7−0.1224 (2)0.36004 (18)0.09529 (12)0.0555 (5)
O80.8842 (2)0.6698 (2)0.19713 (15)0.0631 (5)
O90.8089 (2)0.1954 (2)0.65935 (17)0.0796 (6)
N10.3056 (2)0.4776 (2)0.59954 (14)0.0453 (5)
N20.1982 (2)0.4267 (2)0.49649 (14)0.0441 (5)
N3−0.3569 (3)−0.0901 (2)0.26028 (19)0.0568 (6)
C10.5283 (3)0.6659 (2)0.71728 (17)0.0384 (5)
C20.6353 (3)0.8076 (2)0.72930 (18)0.0423 (6)
C30.7446 (3)0.8642 (3)0.83179 (19)0.0472 (6)
H30.81590.95790.83790.057*
C40.7485 (3)0.7825 (3)0.92498 (17)0.0427 (6)
C50.6437 (3)0.6424 (3)0.91557 (18)0.0466 (6)
H50.64570.58710.97840.056*
C60.5371 (3)0.5857 (2)0.81357 (18)0.0455 (6)
H60.46840.49090.80790.055*
C70.4131 (3)0.6119 (2)0.60768 (17)0.0390 (5)
C80.0968 (3)0.3000 (3)0.48753 (18)0.0464 (6)
H80.09710.24390.55000.056*
C9−0.0187 (3)0.2433 (2)0.38010 (17)0.0417 (5)
C10−0.0196 (3)0.3255 (2)0.28470 (18)0.0419 (5)
C11−0.1331 (3)0.2684 (3)0.18101 (18)0.0443 (6)
C12−0.2421 (3)0.1325 (3)0.17254 (19)0.0481 (6)
H12−0.31660.09390.10400.058*
C13−0.2392 (3)0.0535 (3)0.26850 (19)0.0471 (6)
C14−0.1305 (3)0.1057 (3)0.37055 (18)0.0475 (6)
H14−0.13150.04960.43300.057*
C15−0.2229 (3)0.3030 (3)−0.01694 (19)0.0638 (7)
H15A−0.19580.2112−0.04470.096*
H15B−0.19620.3727−0.07190.096*
H15C−0.34380.2869−0.00900.096*
H1A0.296 (3)0.418 (2)0.6542 (17)0.080*
H8A0.977 (2)0.715 (2)0.2410 (19)0.080*
H9A0.759 (3)0.1042 (12)0.657 (2)0.080*
H9B0.743 (3)0.234 (2)0.615 (2)0.080*
H8B0.906 (3)0.5873 (17)0.172 (2)0.080*
U11U22U33U12U13U23
O10.0587 (11)0.0548 (11)0.0468 (9)−0.0006 (9)−0.0125 (8)−0.0006 (7)
O20.0653 (12)0.0487 (10)0.0564 (10)−0.0081 (9)−0.0119 (8)0.0186 (8)
O30.0516 (10)0.0577 (10)0.0434 (9)−0.0048 (8)−0.0026 (7)0.0162 (8)
O40.0512 (11)0.0499 (10)0.0491 (9)−0.0038 (8)−0.0075 (8)0.0046 (8)
O50.0741 (14)0.0609 (12)0.0809 (13)−0.0103 (10)−0.0060 (10)0.0162 (10)
O60.0693 (13)0.0863 (14)0.0677 (11)−0.0289 (11)−0.0142 (10)−0.0032 (10)
O70.0570 (11)0.0588 (11)0.0426 (9)0.0020 (8)−0.0081 (7)0.0056 (8)
O80.0602 (12)0.0694 (13)0.0548 (11)0.0087 (10)−0.0054 (8)0.0095 (9)
O90.0685 (14)0.0679 (14)0.0864 (13)−0.0128 (11)−0.0181 (10)0.0234 (11)
N10.0466 (12)0.0447 (12)0.0358 (10)−0.0027 (9)−0.0075 (9)0.0036 (8)
N20.0404 (12)0.0486 (12)0.0382 (10)0.0044 (10)−0.0029 (8)0.0000 (8)
N30.0452 (13)0.0540 (14)0.0608 (13)−0.0057 (10)0.0010 (11)−0.0022 (11)
C10.0361 (13)0.0385 (13)0.0380 (11)0.0045 (10)0.0016 (9)0.0033 (9)
C20.0410 (14)0.0402 (14)0.0445 (12)0.0056 (11)0.0023 (10)0.0099 (10)
C30.0446 (14)0.0381 (13)0.0519 (13)−0.0001 (11)−0.0025 (11)0.0006 (10)
C40.0396 (13)0.0459 (14)0.0384 (11)0.0067 (11)−0.0025 (10)−0.0013 (10)
C50.0470 (15)0.0489 (15)0.0397 (12)0.0013 (12)0.0012 (10)0.0103 (10)
C60.0425 (14)0.0429 (14)0.0454 (12)−0.0016 (11)0.0005 (10)0.0076 (10)
C70.0354 (13)0.0392 (14)0.0397 (12)0.0027 (11)0.0042 (10)0.0035 (10)
C80.0448 (15)0.0495 (15)0.0410 (12)0.0057 (12)−0.0006 (11)0.0044 (11)
C90.0376 (13)0.0427 (14)0.0405 (12)0.0040 (11)0.0009 (10)−0.0005 (10)
C100.0342 (13)0.0404 (14)0.0469 (13)0.0040 (11)0.0033 (10)−0.0034 (10)
C110.0391 (14)0.0488 (15)0.0415 (12)0.0077 (11)−0.0009 (10)−0.0001 (11)
C120.0382 (14)0.0541 (16)0.0456 (12)0.0065 (12)−0.0042 (10)−0.0070 (11)
C130.0381 (14)0.0425 (14)0.0533 (13)−0.0009 (11)0.0007 (11)−0.0044 (11)
C140.0444 (14)0.0475 (15)0.0453 (12)0.0028 (12)0.0007 (11)0.0014 (11)
C150.0625 (18)0.082 (2)0.0418 (13)0.0149 (15)−0.0093 (12)−0.0008 (12)
O1—C41.353 (2)C1—C71.461 (3)
O1—H10.8200C2—C31.381 (3)
O2—C21.355 (2)C3—C41.377 (3)
O2—H20.8200C3—H30.9300
O3—C71.242 (2)C4—C51.384 (3)
O4—C101.337 (2)C5—C61.367 (3)
O4—H40.8200C5—H50.9300
O5—N31.232 (2)C6—H60.9300
O6—N31.216 (2)C8—C91.447 (3)
O7—C111.366 (3)C8—H80.9300
O7—C151.439 (2)C9—C141.389 (3)
O8—H8A0.855 (19)C9—C101.401 (3)
O8—H8B0.855 (19)C10—C111.407 (3)
O9—H9A0.857 (9)C11—C121.368 (3)
O9—H9B0.85 (2)C12—C131.388 (3)
N1—C71.352 (3)C12—H120.9300
N1—N21.370 (2)C13—C141.368 (3)
N1—H1A0.881 (10)C14—H140.9300
N2—C81.274 (3)C15—H15A0.9600
N3—C131.455 (3)C15—H15B0.9600
C1—C21.401 (3)C15—H15C0.9600
C1—C61.402 (3)
C4—O1—H1109.5O3—C7—N1119.77 (18)
C2—O2—H2109.5O3—C7—C1122.2 (2)
C10—O4—H4109.5N1—C7—C1118.00 (19)
C11—O7—C15117.01 (18)N2—C8—C9120.0 (2)
H8A—O8—H8B104.2 (19)N2—C8—H8120.0
H9A—O9—H9B106.7 (19)C9—C8—H8120.0
C7—N1—N2117.96 (17)C14—C9—C10119.15 (19)
C7—N1—H1A127.0 (17)C14—C9—C8120.0 (2)
N2—N1—H1A115.1 (17)C10—C9—C8120.8 (2)
C8—N2—N1118.57 (18)O4—C10—C9123.22 (18)
O6—N3—O5122.4 (2)O4—C10—C11116.9 (2)
O6—N3—C13118.6 (2)C9—C10—C11119.9 (2)
O5—N3—C13118.98 (19)O7—C11—C12125.54 (19)
C2—C1—C6117.07 (18)O7—C11—C10114.1 (2)
C2—C1—C7118.85 (19)C12—C11—C10120.4 (2)
C6—C1—C7124.1 (2)C11—C12—C13118.6 (2)
O2—C2—C3117.5 (2)C11—C12—H12120.7
O2—C2—C1121.57 (18)C13—C12—H12120.7
C3—C2—C1120.9 (2)C14—C13—C12122.6 (2)
C4—C3—C2120.3 (2)C14—C13—N3118.8 (2)
C4—C3—H3119.9C12—C13—N3118.6 (2)
C2—C3—H3119.9C13—C14—C9119.4 (2)
O1—C4—C3117.5 (2)C13—C14—H14120.3
O1—C4—C5122.60 (19)C9—C14—H14120.3
C3—C4—C5119.93 (19)O7—C15—H15A109.5
C6—C5—C4119.8 (2)O7—C15—H15B109.5
C6—C5—H5120.1H15A—C15—H15B109.5
C4—C5—H5120.1O7—C15—H15C109.5
C5—C6—C1122.0 (2)H15A—C15—H15C109.5
C5—C6—H6119.0H15B—C15—H15C109.5
C1—C6—H6119.0
D—H···AD—HH···AD···AD—H···A
O8—H8B···O4i0.86 (2)2.39 (2)2.953 (2)124 (2)
O8—H8B···O7i0.86 (2)2.17 (1)3.001 (3)163 (2)
O9—H9B···O3ii0.85 (2)2.19 (1)3.032 (2)170 (3)
O9—H9A···O2iii0.86 (1)1.98 (1)2.840 (2)176 (2)
O8—H8A···O9iv0.86 (2)1.93 (1)2.786 (2)176 (2)
N1—H1A···O5v0.88 (1)2.55 (2)3.183 (3)130 (2)
N1—H1A···O8ii0.88 (1)2.44 (2)3.195 (3)143 (2)
O4—H4···N20.821.852.569 (2)146
O2—H2···O30.821.802.526 (2)147
O1—H1···O8vi0.821.912.718 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8B⋯O4i0.86 (2)2.39 (2)2.953 (2)124 (2)
O8—H8B⋯O7i0.86 (2)2.18 (1)3.001 (3)163 (2)
O9—H9B⋯O3ii0.85 (2)2.19 (1)3.032 (2)170 (3)
O9—H9A⋯O2iii0.86 (1)1.98 (1)2.840 (2)176 (2)
O8—H8A⋯O9iv0.86 (2)1.93 (1)2.786 (2)176 (2)
N1—H1A⋯O5v0.88 (1)2.55 (2)3.183 (3)130 (2)
N1—H1A⋯O8ii0.88 (1)2.45 (2)3.195 (3)143 (2)
O4—H4⋯N20.821.852.569 (2)146
O2—H2⋯O30.821.802.526 (2)147
O1—H1⋯O8vi0.821.912.718 (2)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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