Literature DB >> 21580117

Ethane-1,2-diaminium 4,5-dichloro-phthalate.

Graham Smith, Urs D Wermuth.   

Abstract

In the structure of the title compound, C(2)H(10)N(2) (2+)·C(8)H(2)Cl(2)O(4) (2-), the dications and dianions form hydrogen-bonded ribbon substructures which enclose conjoint cyclic R(2) (1)(7), R(1) (2)(7) and R(4) (2)(8) associations and extend down the c-axis direction. These ribbons inter-associate down b, giving a two-dimensional sheet structure. In the dianions, one of the carboxyl-ate groups is essentially coplanar with the benzene ring, while the other is normal to it [C-C-C-O torsion angles = 177.67 (12) and 81.94 (17)°, respectively].

Entities:  

Year:  2009        PMID: 21580117      PMCID: PMC2980108          DOI: 10.1107/S1600536809054427

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of 4,5-dichloro­phthalates, see: Mattes & Dorau (1986 ▶); Bozkurt et al. (2006 ▶); Smith & Wermuth (2010a ▶,b ▶); Smith et al. (2009 ▶). For the structure of a dianionic 4,5-dichloro­phthalate, see: Büyükgüngör & Odabaşoğlu (2007 ▶). For ring associations, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C2H10N2 2+·C8H2Cl2O4 2− M = 295.12 Monoclinic, a = 12.892 (1) Å b = 8.3881 (5) Å c = 11.8873 (8) Å β = 104.761 (7)° V = 1243.06 (15) Å3 Z = 4 Mo Kα radiation μ = 0.53 mm−1 T = 200 K 0.35 × 0.30 × 0.28 mm

Data collection

Oxford Diffraction Gemini-S CCD detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.955, T max = 0.980 15108 measured reflections 2442 independent reflections 2174 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.071 S = 1.09 2442 reflections 187 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054427/pv2246sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054427/pv2246Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H10N22+·C8H2Cl2O42F(000) = 608
Mr = 295.12Dx = 1.577 Mg m3
Monoclinic, P21/cMelting point: 529 K
Hall symbol: -P 2ycMo Kα radiation, λ = 0.71073 Å
a = 12.892 (1) ÅCell parameters from 7149 reflections
b = 8.3881 (5) Åθ = 3.2–28.8°
c = 11.8873 (8) ŵ = 0.53 mm1
β = 104.761 (7)°T = 200 K
V = 1243.06 (15) Å3Block, colourless
Z = 40.35 × 0.30 × 0.28 mm
Oxford Diffraction Gemini-S CCD detector diffractometer2442 independent reflections
Radiation source: Enhance (Mo) X-ray source2174 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 26.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.955, Tmax = 0.980k = −10→10
15108 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0401P)2 + 0.2917P] where P = (Fo2 + 2Fc2)/3
2442 reflections(Δ/σ)max = 0.001
187 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl41.04287 (3)0.27191 (5)0.51216 (3)0.0296 (1)
Cl51.08544 (3)0.02709 (6)0.72577 (4)0.0387 (2)
O110.70606 (8)−0.03906 (13)0.79920 (9)0.0278 (3)
O120.59071 (7)0.12464 (13)0.68133 (9)0.0241 (3)
O210.58818 (8)0.28845 (12)0.44570 (8)0.0219 (3)
O220.63839 (8)0.45072 (12)0.59914 (8)0.0212 (3)
C10.77314 (10)0.12670 (16)0.67229 (11)0.0161 (4)
C20.75625 (11)0.24125 (16)0.58269 (11)0.0157 (3)
C30.83974 (11)0.28193 (16)0.53312 (12)0.0179 (4)
C40.94056 (11)0.21453 (17)0.57457 (12)0.0199 (4)
C50.95892 (11)0.10573 (18)0.66647 (13)0.0218 (4)
C60.87486 (11)0.06009 (17)0.71298 (12)0.0209 (4)
C110.68289 (10)0.06677 (16)0.72250 (11)0.0164 (4)
C210.65154 (11)0.33073 (16)0.53918 (11)0.0160 (4)
N1A0.60404 (10)1.02002 (15)0.31902 (11)0.0207 (4)
N2A0.58594 (10)0.68181 (14)0.42855 (11)0.0180 (3)
C1A0.69095 (11)0.91156 (17)0.38430 (13)0.0209 (4)
C2A0.65833 (11)0.81624 (17)0.47846 (12)0.0212 (4)
H30.827800.354500.472000.0220*
H60.88660−0.015800.771900.0250*
H11A0.6007 (14)1.117 (2)0.3654 (15)0.034 (5)*
H12A0.6168 (15)1.044 (2)0.2495 (18)0.040 (5)*
H13A0.5379 (16)0.975 (2)0.3039 (16)0.033 (5)*
H14A0.753800.974700.419700.0250*
H15A0.710400.838400.329900.0250*
H21A0.5195 (15)0.718 (2)0.3925 (15)0.029 (5)*
H22A0.6153 (15)0.623 (2)0.3789 (16)0.036 (5)*
H23A0.5786 (15)0.610 (2)0.4847 (17)0.038 (5)*
H24A0.722100.774600.532500.0250*
H25A0.622200.886000.521400.0250*
U11U22U33U12U13U23
Cl40.0202 (2)0.0375 (2)0.0362 (2)−0.0003 (2)0.0163 (2)0.0087 (2)
Cl50.0177 (2)0.0531 (3)0.0476 (3)0.0126 (2)0.0126 (2)0.0243 (2)
O110.0252 (5)0.0276 (6)0.0354 (6)0.0057 (4)0.0163 (5)0.0159 (5)
O120.0151 (5)0.0308 (6)0.0275 (5)0.0017 (4)0.0073 (4)0.0096 (4)
O210.0203 (5)0.0256 (6)0.0190 (5)0.0050 (4)0.0038 (4)−0.0004 (4)
O220.0263 (5)0.0179 (5)0.0222 (5)0.0040 (4)0.0113 (4)0.0004 (4)
C10.0164 (6)0.0151 (6)0.0183 (7)−0.0008 (5)0.0070 (5)−0.0009 (5)
C20.0169 (6)0.0146 (6)0.0162 (6)−0.0008 (5)0.0054 (5)−0.0021 (5)
C30.0199 (7)0.0177 (7)0.0173 (7)−0.0013 (5)0.0067 (5)0.0017 (5)
C40.0178 (7)0.0212 (7)0.0235 (7)−0.0028 (5)0.0106 (6)−0.0009 (6)
C50.0151 (7)0.0243 (8)0.0267 (7)0.0040 (6)0.0067 (6)0.0035 (6)
C60.0202 (7)0.0211 (7)0.0220 (7)0.0021 (6)0.0067 (6)0.0066 (6)
C110.0178 (7)0.0149 (6)0.0180 (7)−0.0013 (5)0.0073 (5)−0.0012 (5)
C210.0180 (7)0.0156 (7)0.0172 (7)0.0008 (5)0.0098 (5)0.0040 (5)
N1A0.0227 (7)0.0195 (6)0.0224 (6)−0.0010 (5)0.0105 (5)0.0022 (5)
N2A0.0183 (6)0.0159 (6)0.0220 (6)0.0010 (5)0.0092 (5)0.0003 (5)
C1A0.0181 (7)0.0183 (7)0.0283 (7)−0.0013 (5)0.0095 (6)−0.0008 (6)
C2A0.0220 (7)0.0207 (7)0.0202 (7)−0.0012 (6)0.0041 (6)−0.0020 (6)
Cl4—C41.7379 (15)C1—C111.5220 (19)
Cl5—C51.7340 (15)C1—C61.394 (2)
O11—C111.2529 (17)C2—C211.516 (2)
O12—C111.2614 (16)C2—C31.395 (2)
O21—C211.2511 (16)C3—C41.388 (2)
O22—C211.2694 (17)C4—C51.397 (2)
N1A—C1A1.497 (2)C5—C61.390 (2)
N2A—C2A1.4874 (19)C3—H30.9300
N1A—H13A0.91 (2)C6—H60.9300
N1A—H12A0.91 (2)C1A—C2A1.520 (2)
N1A—H11A0.990 (17)C1A—H14A0.9700
N2A—H22A0.921 (18)C1A—H15A0.9700
N2A—H21A0.907 (19)C2A—H24A0.9700
N2A—H23A0.922 (18)C2A—H25A0.9700
C1—C21.4096 (18)
H12A—N1A—H13A107.0 (17)C4—C5—C6119.81 (13)
H11A—N1A—H13A106.3 (16)C1—C6—C5120.77 (13)
C1A—N1A—H12A108.8 (12)O11—C11—C1117.07 (12)
C1A—N1A—H13A113.0 (11)O12—C11—C1117.36 (11)
C1A—N1A—H11A110.1 (10)O11—C11—O12125.55 (13)
H11A—N1A—H12A111.7 (15)O21—C21—O22124.97 (13)
C2A—N2A—H22A110.1 (12)O21—C21—C2119.07 (12)
C2A—N2A—H23A112.1 (12)O22—C21—C2115.84 (11)
C2A—N2A—H21A110.8 (11)C2—C3—H3120.00
H21A—N2A—H23A107.6 (17)C4—C3—H3120.00
H22A—N2A—H23A104.4 (16)C1—C6—H6120.00
H21A—N2A—H22A111.7 (16)C5—C6—H6120.00
C2—C1—C6119.08 (13)N1A—C1A—C2A112.98 (12)
C2—C1—C11122.35 (12)N2A—C2A—C1A111.62 (11)
C6—C1—C11118.50 (12)N1A—C1A—H14A109.00
C3—C2—C12116.79 (12)N1A—C1A—H15A109.00
C1—C2—C3119.92 (13)C2A—C1A—H14A109.00
C1—C2—C12123.24 (12)C2A—C1A—H15A109.00
C2—C3—C4120.28 (13)H14A—C1A—H15A108.00
C3—C4—C5120.05 (13)N2A—C2A—H24A109.00
Cl4—C4—C5121.27 (11)N2A—C2A—H25A109.00
Cl4—C4—C3118.67 (11)C1A—C2A—H24A109.00
Cl5—C5—C4121.40 (11)C1A—C2A—H25A109.00
Cl5—C5—C6118.78 (11)H24A—C2A—H25A108.00
C6—C1—C2—C32.4 (2)C1—C2—C21—O2281.94 (17)
C6—C1—C2—C12−174.79 (12)C3—C2—C21—O2180.75 (17)
C11—C1—C2—C3−174.55 (12)C3—C2—C21—O22−95.33 (15)
C11—C1—C2—C128.3 (2)C2—C3—C4—Cl4−178.67 (11)
C2—C1—C6—C50.2 (2)C2—C3—C4—C5−0.2 (2)
C11—C1—C6—C5177.24 (13)Cl4—C4—C5—Cl51.97 (18)
C2—C1—C11—O11177.67 (12)Cl4—C4—C5—C6−178.80 (11)
C2—C1—C11—O12−0.51 (19)C3—C4—C5—Cl5−176.52 (11)
C6—C1—C11—O110.70 (18)C3—C4—C5—C62.7 (2)
C6—C1—C11—O12−177.48 (12)Cl5—C5—C6—C1176.53 (11)
C1—C2—C3—C4−2.4 (2)C4—C5—C6—C1−2.7 (2)
C12—C2—C3—C4174.95 (12)N1A—C1A—C2A—N2A76.45 (15)
C1—C2—C21—O21−101.99 (16)
D—H···AD—HH···AD···AD—H···A
N1A—H11A···O21i0.990 (17)1.756 (17)2.7452 (16)177.3 (18)
N1A—H12A···O22ii0.91 (2)1.88 (2)2.7709 (16)168.3 (16)
N1A—H13A···O12iii0.91 (2)1.90 (2)2.7876 (17)163.8 (17)
N2A—H21A···O12iii0.907 (19)1.974 (18)2.8306 (16)157.0 (16)
N2A—H21A···O22iii0.907 (19)2.502 (19)3.0370 (17)118.2 (13)
N2A—H22A···O11iv0.921 (18)1.824 (19)2.7221 (17)164.2 (17)
N2A—H23A···O220.922 (18)1.922 (18)2.7619 (16)150.5 (18)
C6—H6···O110.932.442.7594 (18)100
C1A—H15A···O11iv0.972.543.3052 (18)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H11A⋯O21i0.990 (17)1.756 (17)2.7452 (16)177.3 (18)
N1A—H12A⋯O22ii0.91 (2)1.88 (2)2.7709 (16)168.3 (16)
N1A—H13A⋯O12iii0.91 (2)1.90 (2)2.7876 (17)163.8 (17)
N2A—H21A⋯O12iii0.907 (19)1.974 (18)2.8306 (16)157.0 (16)
N2A—H21A⋯O22iii0.907 (19)2.502 (19)3.0370 (17)118.2 (13)
N2A—H22A⋯O11iv0.921 (18)1.824 (19)2.7221 (17)164.2 (17)
N2A—H23A⋯O220.922 (18)1.922 (18)2.7619 (16)150.5 (18)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Zero-, one- and two-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the monocyclic heteroaromatic Lewis bases 2-aminopyrimidine, nicotinamide and isonicotinamide.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2009-02-21       Impact factor: 1.172

4.  Isopropyl-aminium 2-carb-oxy-4,5-di-chloro-benzoate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  4-Methyl-pyridinium 2-carb-oxy-4,5-dichloro-benzoate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

2.  Bis(guanidinium) 4,5-dichloro-phthalate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

3.  Bis(benzyl-aminium) 4,5-dichloro-benzene-1,2-dicarboxyl-ate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31
  3 in total

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