Literature DB >> 21837049

Bis(guanidinium) 4,5-dichloro-phthalate monohydrate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the structure of the title hydrated salt, 2CH(6)N(3) (+)·C(8)H(2)Cl(2)O(4) (2-)·H(2)O, the planes of the carboxyl-ate groups of the dianion are rotated out of the plane of the benzene ring [dihedral angles = 48.42 (10) and 55.64 (9)°]. A duplex-sheet structure is formed through guanidinium-carboxyl-ate N-H⋯O, guanidinium-water N-H⋯O and water-carboxyl-ate O-H⋯O hydrogen-bonding associations.

Entities:  

Year:  2011        PMID: 21837049      PMCID: PMC3152114          DOI: 10.1107/S1600536811021192

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of 1:1 salts of 4,5-dichloro­phthalate, see: Mallinson et al. (2003 ▶); Bozkurt et al. (2006 ▶); Smith et al. (2008 ▶, 2009 ▶); Smith & Wermuth (2010a ▶,d ▶). For 1:2 salts, see: Büyükgüngör & Odabaşoğlu (2007 ▶); Smith & Wermuth (2010a ▶,c ▶). For guanidinium salts of aromatic dicarb­oxy­lic acids, see: Krumbe & Haussuhl (1986 ▶); Smith & Wermuth (2010b ▶).

Experimental

Crystal data

2CH6N3 +·C8H2Cl2O4 2−·H2O M = 371.19 Monoclinic, a = 15.9797 (5) Å b = 6.9432 (2) Å c = 15.2266 (5) Å β = 94.650 (3)° V = 1683.84 (9) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 200 K 0.28 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Gemini-S CCD area-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.933, T max = 0.990 11236 measured reflections 3319 independent reflections 2627 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.16 3319 reflections 264 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.63 e Å−3 Δρmin = −0.83 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021192/ng5176sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021192/ng5176Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021192/ng5176Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2CH6N3+·C8H2Cl2O42·H2OF(000) = 768
Mr = 371.19Dx = 1.464 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6093 reflections
a = 15.9797 (5) Åθ = 3.2–28.6°
b = 6.9432 (2) ŵ = 0.42 mm1
c = 15.2266 (5) ÅT = 200 K
β = 94.650 (3)°Block, colourless
V = 1683.84 (9) Å30.28 × 0.25 × 0.20 mm
Z = 4
Oxford Diffraction Gemini-S CCD area-detector diffractometer3319 independent reflections
Radiation source: Enhance (Mo) X-ray source2627 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −18→19
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −8→8
Tmin = 0.933, Tmax = 0.990l = −11→18
11236 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0562P)2 + 0.1489P] where P = (Fo2 + 2Fc2)/3
3319 reflections(Δ/σ)max = 0.001
264 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.83 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl41.05872 (4)0.24406 (13)0.56212 (5)0.0786 (3)
Cl51.03264 (4)−0.12369 (11)0.67711 (5)0.0676 (3)
O110.70520 (8)0.02886 (19)0.75803 (8)0.0304 (4)
O120.66435 (8)0.04844 (17)0.61463 (8)0.0260 (4)
O210.70448 (9)0.47401 (19)0.64857 (9)0.0325 (4)
O220.73076 (9)0.47465 (18)0.50680 (9)0.0313 (4)
C10.80565 (11)0.1185 (2)0.65803 (11)0.0207 (5)
C20.81671 (11)0.2830 (2)0.60675 (11)0.0221 (5)
C30.89502 (12)0.3185 (3)0.57737 (13)0.0338 (6)
C40.96178 (12)0.1945 (4)0.59905 (14)0.0397 (7)
C50.95069 (13)0.0335 (3)0.65047 (14)0.0361 (7)
C60.87267 (12)−0.0039 (3)0.68007 (12)0.0278 (6)
C110.71840 (11)0.0626 (2)0.67974 (12)0.0206 (5)
C210.74498 (11)0.4223 (2)0.58557 (12)0.0221 (5)
N1A0.51848 (11)0.2730 (3)0.54869 (12)0.0297 (5)
N2A0.51734 (11)0.2568 (3)0.69927 (12)0.0318 (5)
N3A0.40865 (10)0.4034 (2)0.61686 (13)0.0281 (5)
C1A0.48092 (11)0.3101 (3)0.62137 (12)0.0231 (5)
N1B0.74241 (11)0.6136 (3)0.96559 (11)0.0288 (5)
N2B0.73486 (13)0.3392 (3)0.88218 (13)0.0403 (6)
N3B0.74928 (11)0.6306 (3)0.81514 (12)0.0314 (6)
C1B0.74182 (11)0.5289 (3)0.88781 (12)0.0246 (6)
O1W0.56692 (9)0.7224 (2)0.63168 (9)0.0296 (4)
H30.903000.426300.542800.0410*
H60.86520−0.111500.714900.0330*
H11A0.4941 (13)0.288 (3)0.4989 (16)0.029 (6)*
H12A0.5663 (15)0.206 (3)0.5529 (14)0.040 (6)*
H21A0.5643 (18)0.187 (4)0.7004 (17)0.056 (7)*
H22A0.4931 (16)0.254 (3)0.7442 (18)0.048 (7)*
H31A0.3862 (16)0.437 (3)0.6634 (18)0.049 (7)*
H32A0.3855 (14)0.436 (3)0.5679 (16)0.038 (7)*
H11B0.7413 (13)0.740 (3)0.9689 (13)0.033 (6)*
H12B0.7272 (14)0.546 (3)1.0077 (15)0.037 (6)*
H21B0.7375 (16)0.267 (4)0.9278 (18)0.055 (8)*
H22B0.7359 (15)0.281 (4)0.8289 (18)0.056 (8)*
H31B0.7401 (14)0.570 (3)0.7640 (16)0.039 (6)*
H32B0.7451 (13)0.753 (3)0.8189 (14)0.032 (6)*
H11W0.6032 (18)0.637 (4)0.6354 (18)0.058 (8)*
H12W0.5946 (16)0.831 (4)0.6270 (17)0.054 (7)*
U11U22U33U12U13U23
Cl40.0240 (3)0.1185 (7)0.0961 (6)0.0108 (3)0.0218 (3)0.0627 (5)
Cl50.0354 (3)0.0869 (5)0.0818 (5)0.0326 (3)0.0135 (3)0.0423 (4)
O110.0375 (8)0.0322 (7)0.0229 (7)−0.0065 (6)0.0117 (6)−0.0002 (6)
O120.0220 (7)0.0265 (7)0.0292 (7)−0.0010 (5)0.0003 (5)0.0023 (5)
O210.0359 (8)0.0334 (7)0.0283 (7)0.0100 (6)0.0042 (6)−0.0032 (6)
O220.0381 (8)0.0279 (7)0.0276 (7)0.0084 (6)0.0002 (6)0.0072 (6)
C10.0228 (9)0.0234 (9)0.0160 (8)0.0001 (7)0.0024 (7)0.0006 (7)
C20.0230 (9)0.0242 (9)0.0188 (9)−0.0003 (7)0.0007 (7)0.0030 (7)
C30.0274 (10)0.0399 (11)0.0345 (11)−0.0015 (9)0.0050 (8)0.0178 (9)
C40.0202 (10)0.0607 (14)0.0391 (12)0.0016 (9)0.0077 (9)0.0193 (11)
C50.0254 (10)0.0471 (13)0.0360 (12)0.0122 (9)0.0029 (9)0.0129 (10)
C60.0288 (10)0.0299 (10)0.0248 (10)0.0038 (8)0.0025 (8)0.0082 (8)
C110.0241 (9)0.0143 (8)0.0241 (9)0.0013 (7)0.0059 (7)−0.0002 (7)
C210.0246 (9)0.0161 (8)0.0251 (10)−0.0023 (7)−0.0004 (7)0.0007 (7)
N1A0.0270 (9)0.0394 (10)0.0230 (9)0.0087 (8)0.0038 (7)0.0013 (7)
N2A0.0275 (9)0.0451 (10)0.0232 (9)0.0083 (8)0.0051 (7)0.0033 (8)
N3A0.0216 (8)0.0381 (9)0.0248 (10)0.0028 (7)0.0036 (7)−0.0012 (8)
C1A0.0211 (9)0.0228 (9)0.0258 (10)−0.0032 (7)0.0046 (7)0.0001 (7)
N1B0.0426 (10)0.0223 (9)0.0216 (9)−0.0005 (7)0.0027 (7)−0.0003 (7)
N2B0.0696 (14)0.0238 (9)0.0275 (10)−0.0036 (9)0.0042 (9)−0.0020 (8)
N3B0.0434 (10)0.0275 (10)0.0236 (9)0.0023 (8)0.0048 (7)0.0019 (7)
C1B0.0251 (9)0.0247 (10)0.0237 (10)−0.0003 (7)0.0005 (7)0.0011 (7)
O1W0.0265 (7)0.0258 (8)0.0363 (8)−0.0026 (6)0.0021 (6)0.0010 (6)
Cl4—C41.725 (2)N2B—C1B1.324 (3)
Cl5—C51.728 (2)N3B—C1B1.326 (3)
O11—C111.250 (2)N1B—H12B0.85 (2)
O12—C111.265 (2)N1B—H11B0.88 (2)
O21—C211.252 (2)N2B—H21B0.86 (3)
O22—C211.256 (2)N2B—H22B0.91 (3)
O1W—H12W0.88 (3)N3B—H31B0.89 (2)
O1W—H11W0.83 (3)N3B—H32B0.86 (2)
N1A—C1A1.326 (3)C1—C61.387 (3)
N2A—C1A1.331 (3)C1—C111.510 (2)
N3A—C1A1.321 (2)C1—C21.403 (2)
N1A—H12A0.89 (2)C2—C211.514 (2)
N1A—H11A0.83 (2)C2—C31.385 (3)
N2A—H22A0.81 (3)C3—C41.390 (3)
N2A—H21A0.89 (3)C4—C51.384 (3)
N3A—H32A0.84 (2)C5—C61.384 (3)
N3A—H31A0.85 (3)C3—H30.9300
N1B—C1B1.322 (3)C6—H60.9300
H11W—O1W—H12W105 (3)C2—C3—C4120.62 (19)
H11A—N1A—H12A118 (2)C3—C4—C5120.24 (19)
C1A—N1A—H12A119.0 (14)Cl4—C4—C3119.43 (19)
C1A—N1A—H11A121.8 (15)Cl4—C4—C5120.33 (17)
H21A—N2A—H22A115 (2)Cl5—C5—C4120.90 (16)
C1A—N2A—H22A123.6 (18)Cl5—C5—C6119.38 (16)
C1A—N2A—H21A118.3 (17)C4—C5—C6119.71 (19)
C1A—N3A—H32A120.1 (16)C1—C6—C5120.30 (18)
H31A—N3A—H32A119 (2)O12—C11—C1115.63 (15)
C1A—N3A—H31A121.1 (17)O11—C11—O12125.16 (16)
C1B—N1B—H12B116.8 (15)O11—C11—C1119.18 (16)
H11B—N1B—H12B120 (2)O22—C21—C2117.60 (15)
C1B—N1B—H11B119.8 (13)O21—C21—C2116.69 (15)
C1B—N2B—H22B119.6 (18)O21—C21—O22125.71 (16)
C1B—N2B—H21B122.2 (19)C2—C3—H3120.00
H21B—N2B—H22B118 (3)C4—C3—H3120.00
H31B—N3B—H32B122 (2)C5—C6—H6120.00
C1B—N3B—H31B117.4 (14)C1—C6—H6120.00
C1B—N3B—H32B117.4 (14)N1A—C1A—N2A119.67 (18)
C6—C1—C11119.89 (14)N1A—C1A—N3A120.31 (18)
C2—C1—C6120.26 (16)N2A—C1A—N3A120.00 (18)
C2—C1—C11119.44 (15)N1B—C1B—N2B119.68 (19)
C3—C2—C21120.38 (15)N1B—C1B—N3B121.1 (2)
C1—C2—C21120.74 (15)N2B—C1B—N3B119.24 (19)
C1—C2—C3118.86 (16)
C6—C1—C2—C31.2 (2)C1—C2—C21—O2147.5 (2)
C6—C1—C2—C21−177.34 (16)C1—C2—C21—O22−131.93 (17)
C11—C1—C2—C3−171.43 (16)C3—C2—C21—O21−131.02 (18)
C11—C1—C2—C2110.0 (2)C3—C2—C21—O2249.6 (2)
C2—C1—C6—C5−1.1 (3)C2—C3—C4—Cl4−179.47 (15)
C11—C1—C6—C5171.54 (17)C2—C3—C4—C50.0 (3)
C2—C1—C11—O11−129.41 (16)Cl4—C4—C5—Cl5−1.3 (3)
C2—C1—C11—O1252.6 (2)Cl4—C4—C5—C6179.63 (16)
C6—C1—C11—O1157.9 (2)C3—C4—C5—Cl5179.30 (17)
C6—C1—C11—O12−120.04 (17)C3—C4—C5—C60.2 (3)
C1—C2—C3—C4−0.7 (3)Cl5—C5—C6—C1−178.78 (15)
C21—C2—C3—C4177.87 (18)C4—C5—C6—C10.4 (3)
D—H···AD—HH···AD···AD—H···A
N1A—H11A···O1Wi0.83 (2)2.14 (2)2.966 (2)171 (2)
N1A—H12A···O120.89 (2)2.07 (2)2.914 (2)156.8 (19)
N1B—H11B···O22ii0.88 (2)2.07 (2)2.936 (2)166.3 (19)
N1B—H12B···O12iii0.85 (2)2.09 (2)2.904 (2)162 (2)
N2A—H21A···O110.89 (3)2.59 (3)3.447 (2)160 (2)
N2A—H21A···O120.89 (3)2.35 (3)3.125 (2)145 (2)
N2A—H22A···O1Wiv0.81 (3)2.20 (3)3.010 (2)175 (2)
N2B—H21B···O22iii0.86 (3)2.07 (3)2.894 (2)161 (3)
N2B—H22B···O110.91 (3)2.09 (3)2.880 (2)144 (2)
N3A—H31A···O11v0.85 (3)2.06 (3)2.874 (2)159 (2)
N3A—H32A···O22i0.84 (2)2.19 (2)2.923 (2)147 (2)
N3B—H31B···O210.89 (2)1.92 (2)2.799 (2)169 (2)
N3B—H32B···O11vi0.86 (2)2.20 (2)2.966 (2)149.2 (19)
O1W—H11W···O210.83 (3)1.97 (3)2.789 (2)169 (3)
O1W—H12W···O12vi0.88 (3)1.90 (3)2.7716 (19)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H11A⋯O1Wi0.83 (2)2.14 (2)2.966 (2)171 (2)
N1A—H12A⋯O120.89 (2)2.07 (2)2.914 (2)156.8 (19)
N1B—H11B⋯O22ii0.88 (2)2.07 (2)2.936 (2)166.3 (19)
N1B—H12B⋯O12iii0.85 (2)2.09 (2)2.904 (2)162 (2)
N2A—H21A⋯O110.89 (3)2.59 (3)3.447 (2)160 (2)
N2A—H21A⋯O120.89 (3)2.35 (3)3.125 (2)145 (2)
N2A—H22A⋯O1Wiv0.81 (3)2.20 (3)3.010 (2)175 (2)
N2B—H21B⋯O22iii0.86 (3)2.07 (3)2.894 (2)161 (3)
N2B—H22B⋯O110.91 (3)2.09 (3)2.880 (2)144 (2)
N3A—H31A⋯O11v0.85 (3)2.06 (3)2.874 (2)159 (2)
N3A—H32A⋯O22i0.84 (2)2.19 (2)2.923 (2)147 (2)
N3B—H31B⋯O210.89 (2)1.92 (2)2.799 (2)169 (2)
N3B—H32B⋯O11vi0.86 (2)2.20 (2)2.966 (2)149.2 (19)
O1W—H11W⋯O210.83 (3)1.97 (3)2.789 (2)169 (3)
O1W—H12W⋯O12vi0.88 (3)1.90 (3)2.7716 (19)174 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr C       Date:  2010-06-23       Impact factor: 1.172

5.  Zero-, one- and two-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the monocyclic heteroaromatic Lewis bases 2-aminopyrimidine, nicotinamide and isonicotinamide.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2009-02-21       Impact factor: 1.172

6.  One-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with 8-hydroxyquinoline, 8-aminoquinoline and quinoline-2-carboxylic acid (quinaldic acid).

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-02-23       Impact factor: 1.172

7.  Ethane-1,2-diaminium 4,5-dichloro-phthalate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

8.  Structure validation in chemical crystallography.

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2.  Bis(benzyl-aminium) 4,5-dichloro-benzene-1,2-dicarboxyl-ate monohydrate.

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