Literature DB >> 21579726

(E)-N'-[(E)-3-(4-Hydr-oxy-3-methoxy-phen-yl)allyl-idene]isonicotinohydrazide.

H S Naveenkumar, Amirin Sadikun, Pazilah Ibrahim, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(16)H(15)N(3)O(3), the dihedral angle between the pyridine and benzene rings is 7.66 (5)°. The crystal packing is consolidated by inter-molecular C-H⋯O and O-H⋯N inter-actions, which link the mol-ecules into zigzag chains propagating along [010]. The chains are further linked into a three-dimensional network by N-H⋯O, C-H⋯N, C-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21579726      PMCID: PMC2979869          DOI: 10.1107/S1600536810000371

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Lourenco et al. (2008 ▶). For the tuberculostatic activities of isoniazid derivatives, see: Janin (2007 ▶). For related structures, see: Naveenkumar et al. (2009a ▶,b ▶,c ▶); Shi (2005 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H15N3O3 M = 297.31 Monoclinic, a = 5.0470 (1) Å b = 28.9314 (6) Å c = 9.6446 (2) Å β = 90.010 (1)° V = 1408.27 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.53 × 0.20 × 0.08 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.950, T max = 0.992 33857 measured reflections 4144 independent reflections 3534 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.110 S = 1.05 4144 reflections 208 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000371/hb5304sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000371/hb5304Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15N3O3F(000) = 624
Mr = 297.31Dx = 1.402 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9970 reflections
a = 5.0470 (1) Åθ = 2.2–30.1°
b = 28.9314 (6) ŵ = 0.10 mm1
c = 9.6446 (2) ÅT = 100 K
β = 90.010 (1)°Needle, yellow
V = 1408.27 (5) Å30.53 × 0.20 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD diffractometer4144 independent reflections
Radiation source: fine-focus sealed tube3534 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 30.2°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→7
Tmin = 0.950, Tmax = 0.992k = −40→40
33857 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0505P)2 + 0.5887P] where P = (Fo2 + 2Fc2)/3
4144 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.08233 (15)0.46282 (3)0.88942 (9)0.01916 (18)
O20.21767 (17)0.74390 (3)0.22611 (9)0.01855 (18)
O30.60188 (15)0.73516 (3)0.41721 (8)0.01721 (17)
N10.7016 (2)0.32923 (3)1.14947 (11)0.0203 (2)
N20.64104 (19)0.47193 (3)0.84655 (10)0.01645 (19)
N30.68169 (19)0.51003 (3)0.76213 (10)0.0175 (2)
C10.5730 (2)0.38057 (4)0.96577 (15)0.0242 (3)
H1A0.45550.38730.89430.029*
C20.5420 (2)0.34088 (4)1.04462 (15)0.0260 (3)
H2A0.40200.32121.02330.031*
C30.8987 (3)0.35853 (4)1.17893 (13)0.0235 (3)
H3A1.00930.35151.25310.028*
C40.9479 (2)0.39885 (4)1.10550 (12)0.0213 (2)
H4A1.08870.41801.12940.026*
C50.7823 (2)0.41004 (4)0.99545 (11)0.0149 (2)
C60.8505 (2)0.45104 (4)0.90682 (11)0.0144 (2)
C70.4745 (2)0.52317 (4)0.69452 (12)0.0179 (2)
H7A0.31810.50630.70020.021*
C80.4869 (2)0.56419 (4)0.61002 (12)0.0184 (2)
H8A0.64250.58140.60960.022*
C90.2819 (2)0.57851 (4)0.53159 (12)0.0181 (2)
H9A0.13490.55920.52730.022*
C100.2689 (2)0.62152 (4)0.45276 (11)0.0158 (2)
C110.4478 (2)0.65790 (4)0.47779 (11)0.0158 (2)
H11A0.57620.65460.54630.019*
C120.4357 (2)0.69838 (4)0.40220 (11)0.0141 (2)
C130.2379 (2)0.70419 (4)0.29982 (11)0.0144 (2)
C140.0603 (2)0.66845 (4)0.27564 (12)0.0173 (2)
H14A−0.06950.67190.20800.021*
C150.0737 (2)0.62759 (4)0.35120 (12)0.0173 (2)
H15A−0.04780.60410.33420.021*
C160.7875 (2)0.73391 (4)0.52991 (12)0.0176 (2)
H16A0.90590.75980.52290.026*
H16B0.88730.70570.52590.026*
H16C0.69340.73540.61630.026*
H1N20.476 (3)0.4640 (5)0.8667 (16)0.025 (4)*
H1O20.284 (4)0.7669 (7)0.272 (2)0.048 (6)*
U11U22U33U12U13U23
O10.0127 (4)0.0203 (4)0.0245 (4)−0.0018 (3)0.0008 (3)0.0028 (3)
O20.0221 (4)0.0158 (4)0.0178 (4)−0.0010 (3)−0.0061 (3)0.0024 (3)
O30.0162 (4)0.0151 (4)0.0203 (4)−0.0022 (3)−0.0061 (3)0.0015 (3)
N10.0241 (5)0.0162 (5)0.0204 (5)−0.0010 (4)0.0014 (4)0.0014 (4)
N20.0127 (4)0.0140 (4)0.0226 (5)−0.0011 (3)0.0009 (3)0.0045 (4)
N30.0172 (4)0.0131 (4)0.0221 (5)−0.0014 (3)0.0008 (3)0.0035 (4)
C10.0188 (5)0.0180 (6)0.0358 (7)−0.0030 (4)−0.0089 (5)0.0068 (5)
C20.0201 (6)0.0178 (6)0.0400 (7)−0.0052 (4)−0.0061 (5)0.0068 (5)
C30.0312 (6)0.0218 (6)0.0175 (5)−0.0057 (5)−0.0059 (4)0.0030 (5)
C40.0249 (6)0.0206 (6)0.0183 (5)−0.0066 (4)−0.0042 (4)0.0012 (4)
C50.0139 (5)0.0130 (5)0.0178 (5)0.0010 (4)0.0029 (4)−0.0013 (4)
C60.0139 (5)0.0128 (5)0.0163 (5)−0.0004 (4)0.0009 (4)−0.0009 (4)
C70.0162 (5)0.0154 (5)0.0220 (5)−0.0018 (4)0.0009 (4)0.0018 (4)
C80.0169 (5)0.0154 (5)0.0228 (6)−0.0009 (4)0.0011 (4)0.0025 (4)
C90.0170 (5)0.0153 (5)0.0221 (6)−0.0014 (4)0.0006 (4)0.0018 (4)
C100.0154 (5)0.0155 (5)0.0166 (5)0.0012 (4)0.0008 (4)0.0006 (4)
C110.0136 (5)0.0168 (5)0.0171 (5)0.0015 (4)−0.0021 (4)0.0010 (4)
C120.0124 (4)0.0149 (5)0.0149 (5)0.0004 (4)0.0003 (3)−0.0018 (4)
C130.0157 (5)0.0152 (5)0.0122 (5)0.0018 (4)−0.0003 (3)−0.0003 (4)
C140.0178 (5)0.0186 (5)0.0155 (5)−0.0005 (4)−0.0042 (4)−0.0015 (4)
C150.0166 (5)0.0164 (5)0.0190 (5)−0.0018 (4)−0.0013 (4)−0.0022 (4)
C160.0154 (5)0.0197 (5)0.0178 (5)−0.0003 (4)−0.0045 (4)−0.0015 (4)
O1—C61.2301 (13)C5—C61.5021 (15)
O2—C131.3550 (13)C7—C81.4410 (16)
O2—H1O20.87 (2)C7—H7A0.9300
O3—C121.3626 (13)C8—C91.3470 (16)
O3—C161.4352 (13)C8—H8A0.9300
N1—C21.3360 (16)C9—C101.4598 (15)
N1—C31.3373 (16)C9—H9A0.9300
N2—C61.3494 (14)C10—C151.4000 (15)
N2—N31.3856 (13)C10—C111.4075 (15)
N2—H1N20.884 (17)C11—C121.3808 (15)
N3—C71.2895 (15)C11—H11A0.9300
C1—C21.3862 (17)C12—C131.4142 (15)
C1—C51.3875 (16)C13—C141.3881 (15)
C1—H1A0.9300C14—C151.3904 (16)
C2—H2A0.9300C14—H14A0.9300
C3—C41.3871 (17)C15—H15A0.9300
C3—H3A0.9300C16—H16A0.9600
C4—C51.3889 (16)C16—H16B0.9600
C4—H4A0.9300C16—H16C0.9600
C13—O2—H1O2110.8 (13)C9—C8—H8A118.7
C12—O3—C16117.55 (9)C7—C8—H8A118.7
C2—N1—C3116.70 (10)C8—C9—C10126.10 (10)
C6—N2—N3119.56 (9)C8—C9—H9A117.0
C6—N2—H1N2121.8 (10)C10—C9—H9A117.0
N3—N2—H1N2118.3 (10)C15—C10—C11118.52 (10)
C7—N3—N2114.31 (9)C15—C10—C9120.18 (10)
C2—C1—C5118.81 (11)C11—C10—C9121.29 (10)
C2—C1—H1A120.6C12—C11—C10121.02 (10)
C5—C1—H1A120.6C12—C11—H11A119.5
N1—C2—C1123.79 (11)C10—C11—H11A119.5
N1—C2—H2A118.1O3—C12—C11125.39 (10)
C1—C2—H2A118.1O3—C12—C13114.57 (9)
N1—C3—C4123.91 (11)C11—C12—C13120.04 (10)
N1—C3—H3A118.0O2—C13—C14119.67 (10)
C4—C3—H3A118.0O2—C13—C12121.34 (10)
C3—C4—C5118.58 (11)C14—C13—C12118.99 (10)
C3—C4—H4A120.7C13—C14—C15120.91 (10)
C5—C4—H4A120.7C13—C14—H14A119.5
C1—C5—C4118.19 (11)C15—C14—H14A119.5
C1—C5—C6122.84 (10)C14—C15—C10120.51 (10)
C4—C5—C6118.76 (10)C14—C15—H15A119.7
O1—C6—N2124.21 (10)C10—C15—H15A119.7
O1—C6—C5120.96 (10)O3—C16—H16A109.5
N2—C6—C5114.79 (9)O3—C16—H16B109.5
N3—C7—C8119.57 (10)H16A—C16—H16B109.5
N3—C7—H7A120.2O3—C16—H16C109.5
C8—C7—H7A120.2H16A—C16—H16C109.5
C9—C8—C7122.51 (10)H16B—C16—H16C109.5
C6—N2—N3—C7170.58 (10)C8—C9—C10—C15165.29 (12)
C3—N1—C2—C11.0 (2)C8—C9—C10—C11−15.62 (18)
C5—C1—C2—N10.6 (2)C15—C10—C11—C12−1.36 (16)
C2—N1—C3—C4−1.61 (19)C9—C10—C11—C12179.53 (10)
N1—C3—C4—C50.7 (2)C16—O3—C12—C11−6.79 (15)
C2—C1—C5—C4−1.55 (18)C16—O3—C12—C13172.87 (9)
C2—C1—C5—C6173.17 (11)C10—C11—C12—O3−178.97 (10)
C3—C4—C5—C10.97 (18)C10—C11—C12—C131.38 (16)
C3—C4—C5—C6−173.96 (11)O3—C12—C13—O2−1.11 (15)
N3—N2—C6—O1−1.93 (17)C11—C12—C13—O2178.58 (10)
N3—N2—C6—C5−179.76 (9)O3—C12—C13—C14179.36 (10)
C1—C5—C6—O1−144.63 (12)C11—C12—C13—C14−0.95 (16)
C4—C5—C6—O130.05 (16)O2—C13—C14—C15−179.00 (10)
C1—C5—C6—N233.28 (15)C12—C13—C14—C150.54 (16)
C4—C5—C6—N2−152.04 (11)C13—C14—C15—C10−0.54 (17)
N2—N3—C7—C8176.04 (10)C11—C10—C15—C140.93 (16)
N3—C7—C8—C9176.67 (11)C9—C10—C15—C14−179.95 (10)
C7—C8—C9—C10174.30 (11)
Cg1 is the centroid of the C10–C15 benzene ring.
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.886 (15)1.999 (15)2.8622 (12)164.4 (14)
O2—H1O2···N1ii0.87 (2)1.96 (2)2.7750 (13)156.9 (19)
C2—H2A···O3iii0.932.553.1651 (14)124
C4—H4A···N3iv0.932.603.4747 (14)156
C7—H7A···O1i0.932.523.2405 (14)135
C16—H16B···Cg1v0.962.653.4556 (12)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C10–C15 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.886 (15)1.999 (15)2.8622 (12)164.4 (14)
O2—H1O2⋯N1ii0.87 (2)1.96 (2)2.7750 (13)156.9 (19)
C2—H2A⋯O3iii0.932.553.1651 (14)124
C4—H4A⋯N3iv0.932.603.4747 (14)156
C7—H7A⋯O1i0.932.523.2405 (14)135
C16—H16BCg1v0.962.653.4556 (12)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  (E)-N'-(2,4,6-Trihydroxy-benzyl-idene)isonicotinohydrazide sesquihydrate.

Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Wan-Sin Loh; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

2.  (E)-N'-(2,3,4-Trimethoxy-benzyl-idene)isonicotinohydrazide.

Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-30

3.  (E)-N'-(2,4,5-Trimethoxy-benzyl-idene)isonicotinohydrazide dihydrate.

Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-30

4.  (E)-N'-(2-Benzyl-oxybenzyl-idene)isonicotinohydrazide methanol solvate monohydrate.

Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

5.  (E)-N'-(2,4,6-Trimethyl-benzyl-idene)isonicotinohydrazide.

Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Jia Hao Goh; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

6.  (E)-N'-(2,4,5-Trifluorobenzyl-idene)isonicotinohydrazide monohydrate.

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8.  (E)-N'-(2,3,4-Trihy-droxy-benzyl-idene)-isonicotinohydrazide dihydrate.

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