| Literature DB >> 21579553 |
H S Naveenkumar, Amirin Sadikun, Pazilah Ibrahim, Wan-Sin Loh, Hoong-Kun Fun.
Abstract
The asymmetric unit of the title Schiff base compound, C(12)H(15)N(3)O, contains two crystallographically independent mol-ecules, with both existing in an E configuration with respect to the C=N double bonds. In the crystal structure, inter-molecular N-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.Entities:
Year: 2010 PMID: 21579553 PMCID: PMC2979436 DOI: 10.1107/S1600536810019434
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H15N3O | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 3734 reflections |
| θ = 2.7–30.1° | |
| µ = 0.08 mm−1 | |
| β = 119.825 (3)° | Plate, colourless |
| 0.54 × 0.20 × 0.10 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3396 independent reflections |
| Radiation source: fine-focus sealed tube | 2883 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.2°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 12644 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3396 reflections | (Δ/σ)max = 0.001 |
| 301 parameters | Δρmax = 1.15 e Å−3 |
| 2 restraints | Δρmin = −0.47 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1A | 0.45226 (16) | 0.4174 (4) | 0.2514 (2) | 0.0279 (6) | |
| N1A | 0.50282 (19) | 0.5795 (5) | −0.0143 (2) | 0.0270 (7) | |
| N2A | 0.33160 (18) | 0.4903 (4) | 0.1323 (2) | 0.0222 (6) | |
| N3A | 0.29513 (18) | 0.4476 (4) | 0.1835 (2) | 0.0222 (6) | |
| C1A | 0.3923 (2) | 0.5171 (5) | 0.0042 (2) | 0.0228 (7) | |
| H1AA | 0.3391 | 0.4982 | −0.0247 | 0.027* | |
| C2A | 0.4267 (2) | 0.5523 (5) | −0.0517 (3) | 0.0245 (7) | |
| H2AA | 0.3950 | 0.5570 | −0.1182 | 0.029* | |
| C3A | 0.5470 (2) | 0.5727 (6) | 0.0815 (3) | 0.0332 (9) | |
| H3AA | 0.6000 | 0.5926 | 0.1087 | 0.040* | |
| C4A | 0.5184 (2) | 0.5376 (6) | 0.1427 (3) | 0.0307 (8) | |
| H4AA | 0.5516 | 0.5322 | 0.2089 | 0.037* | |
| C5A | 0.4391 (2) | 0.5108 (5) | 0.1032 (3) | 0.0233 (7) | |
| C6A | 0.4089 (2) | 0.4684 (5) | 0.1703 (2) | 0.0219 (7) | |
| C7A | 0.2215 (2) | 0.4758 (4) | 0.1376 (3) | 0.0224 (6) | |
| H7AA | 0.1994 | 0.5197 | 0.0762 | 0.027* | |
| C8A | 0.1715 (2) | 0.4418 (5) | 0.1777 (3) | 0.0256 (7) | |
| C9A | 0.0963 (3) | 0.4814 (6) | 0.1240 (3) | 0.0356 (9) | |
| H9AA | 0.0812 | 0.5247 | 0.0638 | 0.043* | |
| C10A | 0.0337 (3) | 0.4641 (7) | 0.1499 (4) | 0.0429 (11) | |
| H10A | 0.0568 | 0.4299 | 0.2164 | 0.052* | |
| H10B | −0.0026 | 0.3818 | 0.1099 | 0.052* | |
| C11A | −0.0096 (3) | 0.6178 (7) | 0.1369 (4) | 0.0448 (12) | |
| H11A | −0.0508 | 0.6005 | 0.1510 | 0.067* | |
| H11B | −0.0311 | 0.6539 | 0.0717 | 0.067* | |
| H11C | 0.0254 | 0.6975 | 0.1798 | 0.067* | |
| C12A | 0.2060 (2) | 0.3646 (6) | 0.2752 (3) | 0.0301 (8) | |
| H12A | 0.1734 | 0.2774 | 0.2727 | 0.045* | |
| H12B | 0.2096 | 0.4422 | 0.3214 | 0.045* | |
| H12C | 0.2570 | 0.3248 | 0.2936 | 0.045* | |
| O1B | 0.20324 (15) | 0.6331 (3) | 0.4358 (2) | 0.0268 (6) | |
| N1B | 0.2523 (2) | 1.2198 (4) | 0.5118 (3) | 0.0330 (8) | |
| N2B | 0.08523 (17) | 0.7236 (4) | 0.4095 (2) | 0.0236 (6) | |
| N3B | 0.04966 (18) | 0.5750 (4) | 0.3851 (2) | 0.0241 (6) | |
| C1B | 0.14199 (19) | 1.0456 (5) | 0.4260 (2) | 0.0219 (7) | |
| H1BA | 0.0886 | 1.0349 | 0.3852 | 0.026* | |
| C2B | 0.1756 (2) | 1.1958 (5) | 0.4529 (3) | 0.0256 (7) | |
| H2BA | 0.1434 | 1.2851 | 0.4291 | 0.031* | |
| C3B | 0.2969 (3) | 1.0896 (6) | 0.5452 (4) | 0.0464 (13) | |
| H3BA | 0.3499 | 1.1039 | 0.5869 | 0.056* | |
| C4B | 0.2692 (2) | 0.9350 (5) | 0.5217 (4) | 0.0392 (11) | |
| H4BA | 0.3030 | 0.8483 | 0.5459 | 0.047* | |
| C5B | 0.1895 (2) | 0.9105 (4) | 0.4610 (3) | 0.0241 (7) | |
| C6B | 0.1606 (2) | 0.7417 (4) | 0.4338 (2) | 0.0230 (7) | |
| C7B | −0.0233 (2) | 0.5835 (5) | 0.3572 (3) | 0.0286 (8) | |
| H7BA | −0.0463 | 0.6834 | 0.3502 | 0.034* | |
| C8B | −0.0706 (2) | 0.4398 (5) | 0.3366 (4) | 0.0354 (10) | |
| C9B | −0.1419 (3) | 0.4525 (7) | 0.3267 (5) | 0.0529 (15) | |
| H9BA | −0.1580 | 0.5559 | 0.3297 | 0.063* | |
| C10B | −0.1989 (3) | 0.3214 (7) | 0.3113 (5) | 0.0497 (13) | |
| H10C | −0.1876 | 0.2290 | 0.2836 | 0.060* | |
| H10D | −0.1926 | 0.2896 | 0.3730 | 0.060* | |
| C11B | −0.2777 (4) | 0.3700 (8) | 0.2492 (8) | 0.072 (2) | |
| H11D | −0.3123 | 0.2879 | 0.2476 | 0.108* | |
| H11E | −0.2861 | 0.3870 | 0.1855 | 0.108* | |
| H11F | −0.2876 | 0.4677 | 0.2729 | 0.108* | |
| C12B | −0.0352 (3) | 0.2825 (5) | 0.3361 (4) | 0.0387 (10) | |
| H12D | −0.0744 | 0.2008 | 0.3132 | 0.058* | |
| H12E | 0.0050 | 0.2568 | 0.4002 | 0.058* | |
| H12F | −0.0132 | 0.2886 | 0.2946 | 0.058* | |
| H1NB | 0.059 (3) | 0.808 (7) | 0.421 (4) | 0.023 (11)* | |
| H1NA | 0.306 (3) | 0.543 (7) | 0.082 (4) | 0.028 (13)* |
| O1A | 0.0188 (12) | 0.0390 (16) | 0.0207 (12) | 0.0013 (11) | 0.0059 (10) | 0.0045 (11) |
| N1A | 0.0189 (14) | 0.0374 (18) | 0.0235 (15) | −0.0008 (12) | 0.0098 (12) | 0.0006 (13) |
| N2A | 0.0157 (13) | 0.0295 (15) | 0.0201 (14) | 0.0012 (11) | 0.0079 (11) | 0.0049 (12) |
| N3A | 0.0198 (14) | 0.0243 (14) | 0.0219 (13) | −0.0011 (11) | 0.0099 (11) | 0.0020 (11) |
| C1A | 0.0157 (14) | 0.0303 (17) | 0.0187 (15) | −0.0021 (12) | 0.0056 (12) | −0.0013 (13) |
| C2A | 0.0175 (15) | 0.0339 (19) | 0.0173 (14) | 0.0015 (13) | 0.0051 (12) | 0.0014 (13) |
| C3A | 0.0150 (15) | 0.055 (3) | 0.0224 (17) | −0.0095 (16) | 0.0041 (13) | 0.0000 (17) |
| C4A | 0.0162 (16) | 0.048 (2) | 0.0202 (16) | −0.0066 (15) | 0.0030 (13) | 0.0004 (15) |
| C5A | 0.0122 (14) | 0.0301 (17) | 0.0211 (15) | −0.0009 (12) | 0.0034 (12) | 0.0021 (13) |
| C6A | 0.0161 (14) | 0.0251 (16) | 0.0195 (15) | −0.0022 (12) | 0.0051 (12) | −0.0028 (12) |
| C7A | 0.0184 (15) | 0.0255 (16) | 0.0196 (14) | 0.0002 (12) | 0.0067 (12) | 0.0020 (13) |
| C8A | 0.0186 (16) | 0.0363 (19) | 0.0204 (16) | 0.0034 (14) | 0.0087 (13) | 0.0004 (14) |
| C9A | 0.0235 (19) | 0.052 (3) | 0.0292 (19) | 0.0060 (18) | 0.0117 (16) | 0.0065 (19) |
| C10A | 0.030 (2) | 0.050 (3) | 0.052 (3) | 0.006 (2) | 0.024 (2) | 0.008 (2) |
| C11A | 0.038 (3) | 0.050 (3) | 0.052 (3) | 0.009 (2) | 0.026 (2) | 0.005 (2) |
| C12A | 0.0236 (17) | 0.040 (2) | 0.0255 (17) | 0.0012 (15) | 0.0113 (14) | 0.0032 (16) |
| O1B | 0.0165 (11) | 0.0251 (12) | 0.0306 (13) | 0.0023 (9) | 0.0056 (10) | −0.0032 (11) |
| N1B | 0.0257 (16) | 0.0244 (15) | 0.0346 (17) | −0.0034 (13) | 0.0042 (14) | −0.0038 (14) |
| N2B | 0.0130 (12) | 0.0264 (15) | 0.0249 (14) | −0.0001 (11) | 0.0046 (11) | −0.0037 (12) |
| N3B | 0.0202 (14) | 0.0238 (14) | 0.0230 (14) | −0.0024 (11) | 0.0066 (12) | −0.0003 (11) |
| C1B | 0.0153 (14) | 0.0267 (17) | 0.0189 (14) | 0.0028 (12) | 0.0049 (12) | 0.0007 (12) |
| C2B | 0.0231 (16) | 0.0265 (17) | 0.0236 (15) | 0.0000 (13) | 0.0088 (13) | −0.0017 (13) |
| C3B | 0.0202 (18) | 0.031 (2) | 0.055 (3) | −0.0013 (16) | −0.0055 (18) | −0.008 (2) |
| C4B | 0.0148 (16) | 0.0258 (18) | 0.050 (3) | 0.0010 (13) | −0.0046 (16) | −0.0063 (17) |
| C5B | 0.0164 (14) | 0.0235 (16) | 0.0236 (16) | 0.0006 (12) | 0.0034 (13) | −0.0033 (13) |
| C6B | 0.0181 (15) | 0.0240 (16) | 0.0200 (14) | −0.0001 (12) | 0.0043 (12) | −0.0018 (12) |
| C7B | 0.0191 (15) | 0.0243 (17) | 0.0342 (19) | −0.0018 (13) | 0.0071 (14) | −0.0075 (15) |
| C8B | 0.0235 (18) | 0.0281 (19) | 0.050 (3) | −0.0089 (15) | 0.0144 (18) | −0.0160 (18) |
| C9B | 0.032 (2) | 0.040 (3) | 0.081 (4) | −0.010 (2) | 0.023 (3) | −0.021 (3) |
| C10B | 0.041 (3) | 0.041 (3) | 0.064 (3) | −0.006 (2) | 0.023 (3) | −0.006 (2) |
| C11B | 0.055 (4) | 0.044 (3) | 0.137 (8) | −0.010 (3) | 0.063 (5) | −0.020 (4) |
| C12B | 0.036 (2) | 0.0262 (19) | 0.063 (3) | −0.0065 (16) | 0.032 (2) | −0.0093 (19) |
| O1A—C6A | 1.223 (5) | O1B—C6B | 1.228 (5) |
| N1A—C2A | 1.337 (5) | N1B—C3B | 1.333 (6) |
| N1A—C3A | 1.338 (5) | N1B—C2B | 1.346 (5) |
| N2A—C6A | 1.350 (4) | N2B—C6B | 1.350 (4) |
| N2A—N3A | 1.382 (4) | N2B—N3B | 1.383 (4) |
| N2A—H1NA | 0.83 (6) | N2B—H1NB | 0.94 (6) |
| N3A—C7A | 1.287 (5) | N3B—C7B | 1.284 (5) |
| C1A—C5A | 1.384 (5) | C1B—C2B | 1.384 (5) |
| C1A—C2A | 1.399 (5) | C1B—C5B | 1.395 (5) |
| C1A—H1AA | 0.9300 | C1B—H1BA | 0.9300 |
| C2A—H2AA | 0.9300 | C2B—H2BA | 0.9300 |
| C3A—C4A | 1.385 (6) | C3B—C4B | 1.379 (6) |
| C3A—H3AA | 0.9300 | C3B—H3BA | 0.9300 |
| C4A—C5A | 1.389 (5) | C4B—C5B | 1.397 (5) |
| C4A—H4AA | 0.9300 | C4B—H4BA | 0.9300 |
| C5A—C6A | 1.510 (5) | C5B—C6B | 1.502 (5) |
| C7A—C8A | 1.451 (5) | C7B—C8B | 1.456 (6) |
| C7A—H7AA | 0.9300 | C7B—H7BA | 0.9300 |
| C8A—C9A | 1.340 (5) | C8B—C9B | 1.344 (7) |
| C8A—C12A | 1.503 (5) | C8B—C12B | 1.490 (6) |
| C9A—C10A | 1.496 (6) | C9B—C10B | 1.502 (8) |
| C9A—H9AA | 0.9300 | C9B—H9BA | 0.9300 |
| C10A—C11A | 1.499 (8) | C10B—C11B | 1.431 (10) |
| C10A—H10A | 0.9700 | C10B—H10C | 0.9700 |
| C10A—H10B | 0.9700 | C10B—H10D | 0.9700 |
| C11A—H11A | 0.9600 | C11B—H11D | 0.9600 |
| C11A—H11B | 0.9600 | C11B—H11E | 0.9600 |
| C11A—H11C | 0.9600 | C11B—H11F | 0.9600 |
| C12A—H12A | 0.9600 | C12B—H12D | 0.9600 |
| C12A—H12B | 0.9600 | C12B—H12E | 0.9600 |
| C12A—H12C | 0.9600 | C12B—H12F | 0.9600 |
| C2A—N1A—C3A | 117.0 (3) | C3B—N1B—C2B | 116.8 (4) |
| C6A—N2A—N3A | 120.5 (3) | C6B—N2B—N3B | 121.1 (3) |
| C6A—N2A—H1NA | 121 (4) | C6B—N2B—H1NB | 119 (3) |
| N3A—N2A—H1NA | 117 (4) | N3B—N2B—H1NB | 119 (3) |
| C7A—N3A—N2A | 113.0 (3) | C7B—N3B—N2B | 112.1 (3) |
| C5A—C1A—C2A | 118.6 (3) | C2B—C1B—C5B | 118.9 (3) |
| C5A—C1A—H1AA | 120.7 | C2B—C1B—H1BA | 120.6 |
| C2A—C1A—H1AA | 120.7 | C5B—C1B—H1BA | 120.6 |
| N1A—C2A—C1A | 123.3 (3) | N1B—C2B—C1B | 123.6 (4) |
| N1A—C2A—H2AA | 118.3 | N1B—C2B—H2BA | 118.2 |
| C1A—C2A—H2AA | 118.3 | C1B—C2B—H2BA | 118.2 |
| N1A—C3A—C4A | 123.9 (4) | N1B—C3B—C4B | 124.0 (4) |
| N1A—C3A—H3AA | 118.1 | N1B—C3B—H3BA | 118.0 |
| C4A—C3A—H3AA | 118.1 | C4B—C3B—H3BA | 118.0 |
| C3A—C4A—C5A | 118.6 (4) | C3B—C4B—C5B | 119.0 (4) |
| C3A—C4A—H4AA | 120.7 | C3B—C4B—H4BA | 120.5 |
| C5A—C4A—H4AA | 120.7 | C5B—C4B—H4BA | 120.5 |
| C1A—C5A—C4A | 118.5 (3) | C1B—C5B—C4B | 117.7 (3) |
| C1A—C5A—C6A | 123.3 (3) | C1B—C5B—C6B | 123.9 (3) |
| C4A—C5A—C6A | 118.1 (3) | C4B—C5B—C6B | 118.4 (3) |
| O1A—C6A—N2A | 124.5 (3) | O1B—C6B—N2B | 125.0 (3) |
| O1A—C6A—C5A | 121.4 (3) | O1B—C6B—C5B | 121.7 (3) |
| N2A—C6A—C5A | 114.2 (3) | N2B—C6B—C5B | 113.3 (3) |
| N3A—C7A—C8A | 122.7 (3) | N3B—C7B—C8B | 121.3 (4) |
| N3A—C7A—H7AA | 118.7 | N3B—C7B—H7BA | 119.4 |
| C8A—C7A—H7AA | 118.7 | C8B—C7B—H7BA | 119.4 |
| C9A—C8A—C7A | 117.0 (4) | C9B—C8B—C7B | 118.8 (4) |
| C9A—C8A—C12A | 123.9 (4) | C9B—C8B—C12B | 122.6 (4) |
| C7A—C8A—C12A | 119.1 (3) | C7B—C8B—C12B | 118.4 (4) |
| C8A—C9A—C10A | 127.5 (4) | C8B—C9B—C10B | 128.5 (5) |
| C8A—C9A—H9AA | 116.3 | C8B—C9B—H9BA | 115.8 |
| C10A—C9A—H9AA | 116.3 | C10B—C9B—H9BA | 115.8 |
| C9A—C10A—C11A | 112.0 (5) | C11B—C10B—C9B | 112.3 (6) |
| C9A—C10A—H10A | 109.2 | C11B—C10B—H10C | 109.1 |
| C11A—C10A—H10A | 109.2 | C9B—C10B—H10C | 109.1 |
| C9A—C10A—H10B | 109.2 | C11B—C10B—H10D | 109.1 |
| C11A—C10A—H10B | 109.2 | C9B—C10B—H10D | 109.1 |
| H10A—C10A—H10B | 107.9 | H10C—C10B—H10D | 107.9 |
| C10A—C11A—H11A | 109.5 | C10B—C11B—H11D | 109.5 |
| C10A—C11A—H11B | 109.5 | C10B—C11B—H11E | 109.5 |
| H11A—C11A—H11B | 109.5 | H11D—C11B—H11E | 109.5 |
| C10A—C11A—H11C | 109.5 | C10B—C11B—H11F | 109.5 |
| H11A—C11A—H11C | 109.5 | H11D—C11B—H11F | 109.5 |
| H11B—C11A—H11C | 109.5 | H11E—C11B—H11F | 109.5 |
| C8A—C12A—H12A | 109.5 | C8B—C12B—H12D | 109.5 |
| C8A—C12A—H12B | 109.5 | C8B—C12B—H12E | 109.5 |
| H12A—C12A—H12B | 109.5 | H12D—C12B—H12E | 109.5 |
| C8A—C12A—H12C | 109.5 | C8B—C12B—H12F | 109.5 |
| H12A—C12A—H12C | 109.5 | H12D—C12B—H12F | 109.5 |
| H12B—C12A—H12C | 109.5 | H12E—C12B—H12F | 109.5 |
| C6A—N2A—N3A—C7A | −179.9 (3) | C6B—N2B—N3B—C7B | −175.0 (4) |
| C3A—N1A—C2A—C1A | −0.3 (6) | C3B—N1B—C2B—C1B | −0.3 (7) |
| C5A—C1A—C2A—N1A | 0.4 (6) | C5B—C1B—C2B—N1B | −0.2 (6) |
| C2A—N1A—C3A—C4A | 0.7 (7) | C2B—N1B—C3B—C4B | 1.1 (9) |
| N1A—C3A—C4A—C5A | −1.3 (8) | N1B—C3B—C4B—C5B | −1.5 (10) |
| C2A—C1A—C5A—C4A | −0.9 (6) | C2B—C1B—C5B—C4B | −0.2 (6) |
| C2A—C1A—C5A—C6A | −177.8 (3) | C2B—C1B—C5B—C6B | −177.4 (4) |
| C3A—C4A—C5A—C1A | 1.3 (7) | C3B—C4B—C5B—C1B | 0.9 (8) |
| C3A—C4A—C5A—C6A | 178.4 (4) | C3B—C4B—C5B—C6B | 178.3 (5) |
| N3A—N2A—C6A—O1A | −3.1 (6) | N3B—N2B—C6B—O1B | 0.6 (6) |
| N3A—N2A—C6A—C5A | 176.2 (3) | N3B—N2B—C6B—C5B | −178.2 (3) |
| C1A—C5A—C6A—O1A | 157.8 (4) | C1B—C5B—C6B—O1B | 153.4 (4) |
| C4A—C5A—C6A—O1A | −19.2 (6) | C4B—C5B—C6B—O1B | −23.8 (6) |
| C1A—C5A—C6A—N2A | −21.5 (5) | C1B—C5B—C6B—N2B | −27.8 (5) |
| C4A—C5A—C6A—N2A | 161.5 (4) | C4B—C5B—C6B—N2B | 155.0 (4) |
| N2A—N3A—C7A—C8A | −179.5 (4) | N2B—N3B—C7B—C8B | −174.3 (4) |
| N3A—C7A—C8A—C9A | 177.8 (4) | N3B—C7B—C8B—C9B | 166.8 (6) |
| N3A—C7A—C8A—C12A | −2.5 (6) | N3B—C7B—C8B—C12B | −7.8 (7) |
| C7A—C8A—C9A—C10A | −177.9 (5) | C7B—C8B—C9B—C10B | −176.0 (6) |
| C12A—C8A—C9A—C10A | 2.4 (8) | C12B—C8B—C9B—C10B | −1.7 (11) |
| C8A—C9A—C10A—C11A | 127.7 (6) | C8B—C9B—C10B—C11B | −144.2 (8) |
| H··· | ||||
| N2B—H1NB···N1Ai | 0.95 (6) | 2.08 (6) | 2.973 (5) | 156 (5) |
| N2A—H1NA···N1Bii | 0.83 (6) | 2.26 (6) | 3.005 (5) | 148 (5) |
| C7B—H7BA···O1Aiii | 0.93 | 2.51 | 3.171 (5) | 129 |
| C12A—H12B···O1B | 0.96 | 2.48 | 3.433 (5) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2 | 0.95 (6) | 2.08 (6) | 2.973 (5) | 156 (5) |
| N2 | 0.83 (6) | 2.26 (6) | 3.005 (5) | 148 (5) |
| C7 | 0.93 | 2.51 | 3.171 (5) | 129 |
| C12 | 0.96 | 2.48 | 3.433 (5) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .