Literature DB >> 21579553

(E)-N'-[(E)-2-Methyl-pent-2-enyl-idene]isonicotinohydrazide.

H S Naveenkumar, Amirin Sadikun, Pazilah Ibrahim, Wan-Sin Loh, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title Schiff base compound, C(12)H(15)N(3)O, contains two crystallographically independent mol-ecules, with both existing in an E configuration with respect to the C=N double bonds. In the crystal structure, inter-molecular N-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579553      PMCID: PMC2979436          DOI: 10.1107/S1600536810019434

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of isoniazid derivatives, see: Janin (2007 ▶); Maccari et al. (2005 ▶); Slayden & Barry (2000 ▶). For the bio­logical activity of Schiff bases, see: Kahwa et al. (1986 ▶). For related structures, see: Naveenkumar et al. (2009 ▶); Naveenkumar, Sadikun, Ibrahim, Quah & Fun (2010 ▶); Naveenkumar, Sadikun, Ibrahim, Yeap & Fun (2010 ▶); Shi (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶). For the synthesis, see: Lourenco et al. (2008 ▶).

Experimental

Crystal data

C12H15N3O M = 217.27 Monoclinic, a = 19.809 (4) Å b = 8.3459 (15) Å c = 16.021 (3) Å β = 119.825 (3)° V = 2297.7 (7) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.54 × 0.20 × 0.10 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.957, T max = 0.992 12644 measured reflections 3396 independent reflections 2883 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.225 S = 1.03 3396 reflections 301 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.15 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810019434/is2553sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810019434/is2553Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15N3OF(000) = 928
Mr = 217.27Dx = 1.256 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 3734 reflections
a = 19.809 (4) Åθ = 2.7–30.1°
b = 8.3459 (15) ŵ = 0.08 mm1
c = 16.021 (3) ÅT = 100 K
β = 119.825 (3)°Plate, colourless
V = 2297.7 (7) Å30.54 × 0.20 × 0.10 mm
Z = 8
Bruker APEXII DUO CCD area-detector diffractometer3396 independent reflections
Radiation source: fine-focus sealed tube2883 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 30.2°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −28→27
Tmin = 0.957, Tmax = 0.992k = −11→11
12644 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.225H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.158P)2 + 2.1081P] where P = (Fo2 + 2Fc2)/3
3396 reflections(Δ/σ)max = 0.001
301 parametersΔρmax = 1.15 e Å3
2 restraintsΔρmin = −0.47 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.45226 (16)0.4174 (4)0.2514 (2)0.0279 (6)
N1A0.50282 (19)0.5795 (5)−0.0143 (2)0.0270 (7)
N2A0.33160 (18)0.4903 (4)0.1323 (2)0.0222 (6)
N3A0.29513 (18)0.4476 (4)0.1835 (2)0.0222 (6)
C1A0.3923 (2)0.5171 (5)0.0042 (2)0.0228 (7)
H1AA0.33910.4982−0.02470.027*
C2A0.4267 (2)0.5523 (5)−0.0517 (3)0.0245 (7)
H2AA0.39500.5570−0.11820.029*
C3A0.5470 (2)0.5727 (6)0.0815 (3)0.0332 (9)
H3AA0.60000.59260.10870.040*
C4A0.5184 (2)0.5376 (6)0.1427 (3)0.0307 (8)
H4AA0.55160.53220.20890.037*
C5A0.4391 (2)0.5108 (5)0.1032 (3)0.0233 (7)
C6A0.4089 (2)0.4684 (5)0.1703 (2)0.0219 (7)
C7A0.2215 (2)0.4758 (4)0.1376 (3)0.0224 (6)
H7AA0.19940.51970.07620.027*
C8A0.1715 (2)0.4418 (5)0.1777 (3)0.0256 (7)
C9A0.0963 (3)0.4814 (6)0.1240 (3)0.0356 (9)
H9AA0.08120.52470.06380.043*
C10A0.0337 (3)0.4641 (7)0.1499 (4)0.0429 (11)
H10A0.05680.42990.21640.052*
H10B−0.00260.38180.10990.052*
C11A−0.0096 (3)0.6178 (7)0.1369 (4)0.0448 (12)
H11A−0.05080.60050.15100.067*
H11B−0.03110.65390.07170.067*
H11C0.02540.69750.17980.067*
C12A0.2060 (2)0.3646 (6)0.2752 (3)0.0301 (8)
H12A0.17340.27740.27270.045*
H12B0.20960.44220.32140.045*
H12C0.25700.32480.29360.045*
O1B0.20324 (15)0.6331 (3)0.4358 (2)0.0268 (6)
N1B0.2523 (2)1.2198 (4)0.5118 (3)0.0330 (8)
N2B0.08523 (17)0.7236 (4)0.4095 (2)0.0236 (6)
N3B0.04966 (18)0.5750 (4)0.3851 (2)0.0241 (6)
C1B0.14199 (19)1.0456 (5)0.4260 (2)0.0219 (7)
H1BA0.08861.03490.38520.026*
C2B0.1756 (2)1.1958 (5)0.4529 (3)0.0256 (7)
H2BA0.14341.28510.42910.031*
C3B0.2969 (3)1.0896 (6)0.5452 (4)0.0464 (13)
H3BA0.34991.10390.58690.056*
C4B0.2692 (2)0.9350 (5)0.5217 (4)0.0392 (11)
H4BA0.30300.84830.54590.047*
C5B0.1895 (2)0.9105 (4)0.4610 (3)0.0241 (7)
C6B0.1606 (2)0.7417 (4)0.4338 (2)0.0230 (7)
C7B−0.0233 (2)0.5835 (5)0.3572 (3)0.0286 (8)
H7BA−0.04630.68340.35020.034*
C8B−0.0706 (2)0.4398 (5)0.3366 (4)0.0354 (10)
C9B−0.1419 (3)0.4525 (7)0.3267 (5)0.0529 (15)
H9BA−0.15800.55590.32970.063*
C10B−0.1989 (3)0.3214 (7)0.3113 (5)0.0497 (13)
H10C−0.18760.22900.28360.060*
H10D−0.19260.28960.37300.060*
C11B−0.2777 (4)0.3700 (8)0.2492 (8)0.072 (2)
H11D−0.31230.28790.24760.108*
H11E−0.28610.38700.18550.108*
H11F−0.28760.46770.27290.108*
C12B−0.0352 (3)0.2825 (5)0.3361 (4)0.0387 (10)
H12D−0.07440.20080.31320.058*
H12E0.00500.25680.40020.058*
H12F−0.01320.28860.29460.058*
H1NB0.059 (3)0.808 (7)0.421 (4)0.023 (11)*
H1NA0.306 (3)0.543 (7)0.082 (4)0.028 (13)*
U11U22U33U12U13U23
O1A0.0188 (12)0.0390 (16)0.0207 (12)0.0013 (11)0.0059 (10)0.0045 (11)
N1A0.0189 (14)0.0374 (18)0.0235 (15)−0.0008 (12)0.0098 (12)0.0006 (13)
N2A0.0157 (13)0.0295 (15)0.0201 (14)0.0012 (11)0.0079 (11)0.0049 (12)
N3A0.0198 (14)0.0243 (14)0.0219 (13)−0.0011 (11)0.0099 (11)0.0020 (11)
C1A0.0157 (14)0.0303 (17)0.0187 (15)−0.0021 (12)0.0056 (12)−0.0013 (13)
C2A0.0175 (15)0.0339 (19)0.0173 (14)0.0015 (13)0.0051 (12)0.0014 (13)
C3A0.0150 (15)0.055 (3)0.0224 (17)−0.0095 (16)0.0041 (13)0.0000 (17)
C4A0.0162 (16)0.048 (2)0.0202 (16)−0.0066 (15)0.0030 (13)0.0004 (15)
C5A0.0122 (14)0.0301 (17)0.0211 (15)−0.0009 (12)0.0034 (12)0.0021 (13)
C6A0.0161 (14)0.0251 (16)0.0195 (15)−0.0022 (12)0.0051 (12)−0.0028 (12)
C7A0.0184 (15)0.0255 (16)0.0196 (14)0.0002 (12)0.0067 (12)0.0020 (13)
C8A0.0186 (16)0.0363 (19)0.0204 (16)0.0034 (14)0.0087 (13)0.0004 (14)
C9A0.0235 (19)0.052 (3)0.0292 (19)0.0060 (18)0.0117 (16)0.0065 (19)
C10A0.030 (2)0.050 (3)0.052 (3)0.006 (2)0.024 (2)0.008 (2)
C11A0.038 (3)0.050 (3)0.052 (3)0.009 (2)0.026 (2)0.005 (2)
C12A0.0236 (17)0.040 (2)0.0255 (17)0.0012 (15)0.0113 (14)0.0032 (16)
O1B0.0165 (11)0.0251 (12)0.0306 (13)0.0023 (9)0.0056 (10)−0.0032 (11)
N1B0.0257 (16)0.0244 (15)0.0346 (17)−0.0034 (13)0.0042 (14)−0.0038 (14)
N2B0.0130 (12)0.0264 (15)0.0249 (14)−0.0001 (11)0.0046 (11)−0.0037 (12)
N3B0.0202 (14)0.0238 (14)0.0230 (14)−0.0024 (11)0.0066 (12)−0.0003 (11)
C1B0.0153 (14)0.0267 (17)0.0189 (14)0.0028 (12)0.0049 (12)0.0007 (12)
C2B0.0231 (16)0.0265 (17)0.0236 (15)0.0000 (13)0.0088 (13)−0.0017 (13)
C3B0.0202 (18)0.031 (2)0.055 (3)−0.0013 (16)−0.0055 (18)−0.008 (2)
C4B0.0148 (16)0.0258 (18)0.050 (3)0.0010 (13)−0.0046 (16)−0.0063 (17)
C5B0.0164 (14)0.0235 (16)0.0236 (16)0.0006 (12)0.0034 (13)−0.0033 (13)
C6B0.0181 (15)0.0240 (16)0.0200 (14)−0.0001 (12)0.0043 (12)−0.0018 (12)
C7B0.0191 (15)0.0243 (17)0.0342 (19)−0.0018 (13)0.0071 (14)−0.0075 (15)
C8B0.0235 (18)0.0281 (19)0.050 (3)−0.0089 (15)0.0144 (18)−0.0160 (18)
C9B0.032 (2)0.040 (3)0.081 (4)−0.010 (2)0.023 (3)−0.021 (3)
C10B0.041 (3)0.041 (3)0.064 (3)−0.006 (2)0.023 (3)−0.006 (2)
C11B0.055 (4)0.044 (3)0.137 (8)−0.010 (3)0.063 (5)−0.020 (4)
C12B0.036 (2)0.0262 (19)0.063 (3)−0.0065 (16)0.032 (2)−0.0093 (19)
O1A—C6A1.223 (5)O1B—C6B1.228 (5)
N1A—C2A1.337 (5)N1B—C3B1.333 (6)
N1A—C3A1.338 (5)N1B—C2B1.346 (5)
N2A—C6A1.350 (4)N2B—C6B1.350 (4)
N2A—N3A1.382 (4)N2B—N3B1.383 (4)
N2A—H1NA0.83 (6)N2B—H1NB0.94 (6)
N3A—C7A1.287 (5)N3B—C7B1.284 (5)
C1A—C5A1.384 (5)C1B—C2B1.384 (5)
C1A—C2A1.399 (5)C1B—C5B1.395 (5)
C1A—H1AA0.9300C1B—H1BA0.9300
C2A—H2AA0.9300C2B—H2BA0.9300
C3A—C4A1.385 (6)C3B—C4B1.379 (6)
C3A—H3AA0.9300C3B—H3BA0.9300
C4A—C5A1.389 (5)C4B—C5B1.397 (5)
C4A—H4AA0.9300C4B—H4BA0.9300
C5A—C6A1.510 (5)C5B—C6B1.502 (5)
C7A—C8A1.451 (5)C7B—C8B1.456 (6)
C7A—H7AA0.9300C7B—H7BA0.9300
C8A—C9A1.340 (5)C8B—C9B1.344 (7)
C8A—C12A1.503 (5)C8B—C12B1.490 (6)
C9A—C10A1.496 (6)C9B—C10B1.502 (8)
C9A—H9AA0.9300C9B—H9BA0.9300
C10A—C11A1.499 (8)C10B—C11B1.431 (10)
C10A—H10A0.9700C10B—H10C0.9700
C10A—H10B0.9700C10B—H10D0.9700
C11A—H11A0.9600C11B—H11D0.9600
C11A—H11B0.9600C11B—H11E0.9600
C11A—H11C0.9600C11B—H11F0.9600
C12A—H12A0.9600C12B—H12D0.9600
C12A—H12B0.9600C12B—H12E0.9600
C12A—H12C0.9600C12B—H12F0.9600
C2A—N1A—C3A117.0 (3)C3B—N1B—C2B116.8 (4)
C6A—N2A—N3A120.5 (3)C6B—N2B—N3B121.1 (3)
C6A—N2A—H1NA121 (4)C6B—N2B—H1NB119 (3)
N3A—N2A—H1NA117 (4)N3B—N2B—H1NB119 (3)
C7A—N3A—N2A113.0 (3)C7B—N3B—N2B112.1 (3)
C5A—C1A—C2A118.6 (3)C2B—C1B—C5B118.9 (3)
C5A—C1A—H1AA120.7C2B—C1B—H1BA120.6
C2A—C1A—H1AA120.7C5B—C1B—H1BA120.6
N1A—C2A—C1A123.3 (3)N1B—C2B—C1B123.6 (4)
N1A—C2A—H2AA118.3N1B—C2B—H2BA118.2
C1A—C2A—H2AA118.3C1B—C2B—H2BA118.2
N1A—C3A—C4A123.9 (4)N1B—C3B—C4B124.0 (4)
N1A—C3A—H3AA118.1N1B—C3B—H3BA118.0
C4A—C3A—H3AA118.1C4B—C3B—H3BA118.0
C3A—C4A—C5A118.6 (4)C3B—C4B—C5B119.0 (4)
C3A—C4A—H4AA120.7C3B—C4B—H4BA120.5
C5A—C4A—H4AA120.7C5B—C4B—H4BA120.5
C1A—C5A—C4A118.5 (3)C1B—C5B—C4B117.7 (3)
C1A—C5A—C6A123.3 (3)C1B—C5B—C6B123.9 (3)
C4A—C5A—C6A118.1 (3)C4B—C5B—C6B118.4 (3)
O1A—C6A—N2A124.5 (3)O1B—C6B—N2B125.0 (3)
O1A—C6A—C5A121.4 (3)O1B—C6B—C5B121.7 (3)
N2A—C6A—C5A114.2 (3)N2B—C6B—C5B113.3 (3)
N3A—C7A—C8A122.7 (3)N3B—C7B—C8B121.3 (4)
N3A—C7A—H7AA118.7N3B—C7B—H7BA119.4
C8A—C7A—H7AA118.7C8B—C7B—H7BA119.4
C9A—C8A—C7A117.0 (4)C9B—C8B—C7B118.8 (4)
C9A—C8A—C12A123.9 (4)C9B—C8B—C12B122.6 (4)
C7A—C8A—C12A119.1 (3)C7B—C8B—C12B118.4 (4)
C8A—C9A—C10A127.5 (4)C8B—C9B—C10B128.5 (5)
C8A—C9A—H9AA116.3C8B—C9B—H9BA115.8
C10A—C9A—H9AA116.3C10B—C9B—H9BA115.8
C9A—C10A—C11A112.0 (5)C11B—C10B—C9B112.3 (6)
C9A—C10A—H10A109.2C11B—C10B—H10C109.1
C11A—C10A—H10A109.2C9B—C10B—H10C109.1
C9A—C10A—H10B109.2C11B—C10B—H10D109.1
C11A—C10A—H10B109.2C9B—C10B—H10D109.1
H10A—C10A—H10B107.9H10C—C10B—H10D107.9
C10A—C11A—H11A109.5C10B—C11B—H11D109.5
C10A—C11A—H11B109.5C10B—C11B—H11E109.5
H11A—C11A—H11B109.5H11D—C11B—H11E109.5
C10A—C11A—H11C109.5C10B—C11B—H11F109.5
H11A—C11A—H11C109.5H11D—C11B—H11F109.5
H11B—C11A—H11C109.5H11E—C11B—H11F109.5
C8A—C12A—H12A109.5C8B—C12B—H12D109.5
C8A—C12A—H12B109.5C8B—C12B—H12E109.5
H12A—C12A—H12B109.5H12D—C12B—H12E109.5
C8A—C12A—H12C109.5C8B—C12B—H12F109.5
H12A—C12A—H12C109.5H12D—C12B—H12F109.5
H12B—C12A—H12C109.5H12E—C12B—H12F109.5
C6A—N2A—N3A—C7A−179.9 (3)C6B—N2B—N3B—C7B−175.0 (4)
C3A—N1A—C2A—C1A−0.3 (6)C3B—N1B—C2B—C1B−0.3 (7)
C5A—C1A—C2A—N1A0.4 (6)C5B—C1B—C2B—N1B−0.2 (6)
C2A—N1A—C3A—C4A0.7 (7)C2B—N1B—C3B—C4B1.1 (9)
N1A—C3A—C4A—C5A−1.3 (8)N1B—C3B—C4B—C5B−1.5 (10)
C2A—C1A—C5A—C4A−0.9 (6)C2B—C1B—C5B—C4B−0.2 (6)
C2A—C1A—C5A—C6A−177.8 (3)C2B—C1B—C5B—C6B−177.4 (4)
C3A—C4A—C5A—C1A1.3 (7)C3B—C4B—C5B—C1B0.9 (8)
C3A—C4A—C5A—C6A178.4 (4)C3B—C4B—C5B—C6B178.3 (5)
N3A—N2A—C6A—O1A−3.1 (6)N3B—N2B—C6B—O1B0.6 (6)
N3A—N2A—C6A—C5A176.2 (3)N3B—N2B—C6B—C5B−178.2 (3)
C1A—C5A—C6A—O1A157.8 (4)C1B—C5B—C6B—O1B153.4 (4)
C4A—C5A—C6A—O1A−19.2 (6)C4B—C5B—C6B—O1B−23.8 (6)
C1A—C5A—C6A—N2A−21.5 (5)C1B—C5B—C6B—N2B−27.8 (5)
C4A—C5A—C6A—N2A161.5 (4)C4B—C5B—C6B—N2B155.0 (4)
N2A—N3A—C7A—C8A−179.5 (4)N2B—N3B—C7B—C8B−174.3 (4)
N3A—C7A—C8A—C9A177.8 (4)N3B—C7B—C8B—C9B166.8 (6)
N3A—C7A—C8A—C12A−2.5 (6)N3B—C7B—C8B—C12B−7.8 (7)
C7A—C8A—C9A—C10A−177.9 (5)C7B—C8B—C9B—C10B−176.0 (6)
C12A—C8A—C9A—C10A2.4 (8)C12B—C8B—C9B—C10B−1.7 (11)
C8A—C9A—C10A—C11A127.7 (6)C8B—C9B—C10B—C11B−144.2 (8)
D—H···AD—HH···AD···AD—H···A
N2B—H1NB···N1Ai0.95 (6)2.08 (6)2.973 (5)156 (5)
N2A—H1NA···N1Bii0.83 (6)2.26 (6)3.005 (5)148 (5)
C7B—H7BA···O1Aiii0.932.513.171 (5)129
C12A—H12B···O1B0.962.483.433 (5)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2B—H1NB⋯N1Ai0.95 (6)2.08 (6)2.973 (5)156 (5)
N2A—H1NA⋯N1Bii0.83 (6)2.26 (6)3.005 (5)148 (5)
C7B—H7BA⋯O1Aiii0.932.513.171 (5)129
C12A—H12B⋯O1B0.962.483.433 (5)173

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

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Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-10

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