| Literature DB >> 21579427 |
H S Naveenkumar, Amirin Sadikun, Pazilah Ibrahim, Madhukar Hemamalini, Hoong-Kun Fun.
Abstract
The title compound, C(20)H(17)N(3)O(2)·CH(4)O·H(2)O, was synthesized by the condensation reaction of 2-benzyl-oxybenzaldehyde with isoniazid (isonicotinic acid hydrazide). The tricyclic compound displays a trans configuration with respect to the C=N double bond. The central benzene ring makes dihedral angles of 8.83 (7) and 70.39 (8)° with the pyridine ring and the terminal benzene ring, respectively. The dihedral angle between the pyridine ring and the terminal benzene ring is 73.11 (8)°. In the crystal structure, mol-ecules are connected by inter-molecular N-H⋯O, O-H⋯O, O-H⋯(N,N) and C-H⋯O hydrogen bonds, forming a two-dimensional network perpendicular to the a axis.Entities:
Year: 2010 PMID: 21579427 PMCID: PMC2979361 DOI: 10.1107/S1600536810016958
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H17N3O2·CH4O·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3013 reflections |
| θ = 2.3–30.0° | |
| µ = 0.09 mm−1 | |
| β = 98.672 (3)° | Plate, colourless |
| 0.35 × 0.18 × 0.09 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 6515 independent reflections |
| Radiation source: fine-focus sealed tube | 4012 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 24474 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 6515 reflections | (Δ/σ)max < 0.001 |
| 270 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.12066 (6) | 0.05407 (9) | 0.36337 (14) | 0.0250 (3) | |
| O2 | 0.36364 (6) | 0.37324 (8) | 0.80611 (13) | 0.0211 (2) | |
| N1 | −0.05513 (8) | 0.28776 (12) | 0.00600 (16) | 0.0258 (3) | |
| N2 | 0.17041 (7) | 0.21885 (11) | 0.43066 (15) | 0.0194 (3) | |
| N3 | 0.22141 (7) | 0.17181 (10) | 0.54646 (15) | 0.0196 (3) | |
| C1 | 0.04882 (9) | 0.31412 (13) | 0.2126 (2) | 0.0241 (3) | |
| H1A | 0.0791 | 0.3622 | 0.2765 | 0.029* | |
| C2 | −0.00980 (9) | 0.35168 (14) | 0.1031 (2) | 0.0270 (4) | |
| H2A | −0.0181 | 0.4258 | 0.0966 | 0.032* | |
| C3 | −0.04163 (10) | 0.18181 (14) | 0.0186 (2) | 0.0284 (4) | |
| H3A | −0.0721 | 0.1356 | −0.0480 | 0.034* | |
| C4 | 0.01531 (9) | 0.13683 (13) | 0.1257 (2) | 0.0256 (3) | |
| H4A | 0.0223 | 0.0624 | 0.1304 | 0.031* | |
| C5 | 0.06174 (8) | 0.20416 (12) | 0.22571 (17) | 0.0191 (3) | |
| C6 | 0.12010 (8) | 0.15226 (12) | 0.34544 (18) | 0.0194 (3) | |
| C7 | 0.26917 (8) | 0.23667 (12) | 0.62477 (18) | 0.0192 (3) | |
| H7A | 0.2676 | 0.3101 | 0.6022 | 0.023* | |
| C8 | 0.32580 (8) | 0.19465 (12) | 0.74905 (17) | 0.0176 (3) | |
| C9 | 0.33274 (8) | 0.08431 (12) | 0.78078 (18) | 0.0200 (3) | |
| H9A | 0.3004 | 0.0360 | 0.7218 | 0.024* | |
| C10 | 0.38701 (9) | 0.04540 (12) | 0.89869 (19) | 0.0216 (3) | |
| H10A | 0.3906 | −0.0282 | 0.9193 | 0.026* | |
| C11 | 0.43586 (8) | 0.11734 (13) | 0.98564 (19) | 0.0216 (3) | |
| H11A | 0.4724 | 0.0914 | 1.0644 | 0.026* | |
| C12 | 0.43089 (8) | 0.22761 (12) | 0.95664 (18) | 0.0198 (3) | |
| H12A | 0.4644 | 0.2751 | 1.0145 | 0.024* | |
| C13 | 0.37506 (8) | 0.26656 (11) | 0.83943 (17) | 0.0179 (3) | |
| C14 | 0.40996 (9) | 0.45051 (12) | 0.90037 (19) | 0.0212 (3) | |
| H14A | 0.4624 | 0.4457 | 0.8825 | 0.025* | |
| H14B | 0.4084 | 0.4369 | 1.0091 | 0.025* | |
| C15 | 0.37824 (9) | 0.55991 (12) | 0.85576 (17) | 0.0201 (3) | |
| C16 | 0.41662 (9) | 0.63173 (13) | 0.77156 (19) | 0.0240 (3) | |
| H16A | 0.4638 | 0.6129 | 0.7455 | 0.029* | |
| C17 | 0.38469 (10) | 0.73098 (13) | 0.7266 (2) | 0.0291 (4) | |
| H17A | 0.4104 | 0.7784 | 0.6702 | 0.035* | |
| C18 | 0.31456 (10) | 0.75978 (13) | 0.7654 (2) | 0.0287 (4) | |
| H18A | 0.2932 | 0.8263 | 0.7349 | 0.034* | |
| C19 | 0.27639 (10) | 0.68912 (14) | 0.8500 (2) | 0.0278 (4) | |
| H19A | 0.2295 | 0.7086 | 0.8768 | 0.033* | |
| C20 | 0.30781 (9) | 0.58952 (13) | 0.89466 (19) | 0.0245 (3) | |
| H20A | 0.2818 | 0.5423 | 0.9508 | 0.029* | |
| O3 | 0.17234 (7) | 0.45730 (9) | 0.42445 (15) | 0.0268 (3) | |
| C21 | 0.21264 (10) | 0.52275 (14) | 0.5437 (2) | 0.0269 (3) | |
| H21A | 0.2657 | 0.5039 | 0.5583 | 0.040* | |
| H21B | 0.1926 | 0.5110 | 0.6383 | 0.040* | |
| H21C | 0.2068 | 0.5974 | 0.5149 | 0.040* | |
| O1W | 0.16524 (7) | 0.56017 (11) | 0.14832 (15) | 0.0261 (3) | |
| H1N2 | 0.1707 (11) | 0.2913 (16) | 0.416 (2) | 0.027 (5)* | |
| H1O3 | 0.1722 (13) | 0.4936 (19) | 0.339 (3) | 0.051 (7)* | |
| H1W1 | 0.1606 (14) | 0.518 (2) | 0.079 (3) | 0.052 (7)* | |
| H2W1 | 0.1375 (15) | 0.616 (2) | 0.115 (3) | 0.056 (7)* |
| O1 | 0.0287 (6) | 0.0175 (5) | 0.0262 (6) | −0.0017 (4) | −0.0046 (5) | 0.0026 (5) |
| O2 | 0.0244 (5) | 0.0139 (5) | 0.0223 (5) | −0.0010 (4) | −0.0054 (4) | −0.0011 (4) |
| N1 | 0.0228 (6) | 0.0274 (7) | 0.0257 (7) | 0.0022 (5) | −0.0009 (6) | 0.0010 (6) |
| N2 | 0.0213 (6) | 0.0161 (6) | 0.0187 (6) | −0.0002 (5) | −0.0032 (5) | 0.0025 (5) |
| N3 | 0.0188 (6) | 0.0188 (6) | 0.0199 (6) | 0.0012 (4) | −0.0016 (5) | 0.0024 (5) |
| C1 | 0.0232 (7) | 0.0209 (7) | 0.0259 (8) | −0.0017 (6) | −0.0038 (6) | −0.0008 (7) |
| C2 | 0.0259 (8) | 0.0224 (8) | 0.0309 (9) | 0.0036 (6) | −0.0012 (7) | 0.0024 (7) |
| C3 | 0.0274 (8) | 0.0283 (9) | 0.0259 (8) | −0.0019 (6) | −0.0078 (7) | −0.0013 (7) |
| C4 | 0.0275 (8) | 0.0196 (8) | 0.0269 (8) | −0.0007 (6) | −0.0045 (7) | −0.0009 (7) |
| C5 | 0.0181 (6) | 0.0209 (7) | 0.0179 (7) | −0.0005 (5) | 0.0012 (6) | 0.0020 (6) |
| C6 | 0.0203 (7) | 0.0200 (7) | 0.0173 (7) | −0.0019 (5) | 0.0011 (6) | 0.0000 (6) |
| C7 | 0.0207 (7) | 0.0156 (7) | 0.0202 (7) | −0.0008 (5) | −0.0008 (6) | 0.0008 (6) |
| C8 | 0.0181 (6) | 0.0165 (7) | 0.0177 (7) | 0.0006 (5) | 0.0005 (5) | 0.0012 (6) |
| C9 | 0.0205 (7) | 0.0174 (7) | 0.0213 (7) | −0.0007 (5) | 0.0006 (6) | −0.0015 (6) |
| C10 | 0.0231 (7) | 0.0163 (7) | 0.0249 (8) | 0.0022 (5) | 0.0020 (6) | 0.0035 (6) |
| C11 | 0.0195 (7) | 0.0233 (8) | 0.0208 (7) | 0.0039 (5) | −0.0006 (6) | 0.0025 (6) |
| C12 | 0.0178 (6) | 0.0209 (7) | 0.0195 (7) | 0.0003 (5) | −0.0010 (6) | −0.0012 (6) |
| C13 | 0.0197 (6) | 0.0152 (7) | 0.0190 (7) | 0.0011 (5) | 0.0032 (6) | −0.0001 (6) |
| C14 | 0.0225 (7) | 0.0170 (7) | 0.0222 (7) | −0.0024 (5) | −0.0032 (6) | −0.0014 (6) |
| C15 | 0.0252 (7) | 0.0170 (7) | 0.0165 (7) | −0.0015 (5) | −0.0022 (6) | −0.0019 (6) |
| C16 | 0.0245 (7) | 0.0228 (8) | 0.0234 (8) | −0.0026 (6) | −0.0003 (6) | −0.0005 (7) |
| C17 | 0.0339 (9) | 0.0220 (8) | 0.0294 (9) | −0.0054 (6) | −0.0013 (7) | 0.0039 (7) |
| C18 | 0.0361 (9) | 0.0174 (8) | 0.0294 (9) | 0.0018 (6) | −0.0053 (8) | −0.0013 (7) |
| C19 | 0.0300 (8) | 0.0251 (8) | 0.0270 (8) | 0.0051 (6) | 0.0003 (7) | −0.0035 (7) |
| C20 | 0.0291 (8) | 0.0222 (8) | 0.0220 (8) | −0.0002 (6) | 0.0032 (7) | −0.0003 (7) |
| O3 | 0.0307 (6) | 0.0224 (6) | 0.0244 (6) | −0.0056 (4) | −0.0052 (5) | 0.0018 (5) |
| C21 | 0.0288 (8) | 0.0243 (8) | 0.0262 (8) | −0.0023 (6) | 0.0000 (7) | −0.0033 (7) |
| O1W | 0.0298 (6) | 0.0224 (6) | 0.0231 (6) | 0.0033 (5) | −0.0058 (5) | −0.0012 (5) |
| O1—C6 | 1.2263 (18) | C11—C12 | 1.390 (2) |
| O2—C13 | 1.3619 (17) | C11—H11A | 0.9300 |
| O2—C14 | 1.4382 (18) | C12—C13 | 1.400 (2) |
| N1—C3 | 1.336 (2) | C12—H12A | 0.9300 |
| N1—C2 | 1.338 (2) | C14—C15 | 1.497 (2) |
| N2—C6 | 1.3542 (19) | C14—H14A | 0.9700 |
| N2—N3 | 1.3817 (18) | C14—H14B | 0.9700 |
| N2—H1N2 | 0.91 (2) | C15—C20 | 1.394 (2) |
| N3—C7 | 1.2881 (19) | C15—C16 | 1.397 (2) |
| C1—C5 | 1.383 (2) | C16—C17 | 1.386 (2) |
| C1—C2 | 1.385 (2) | C16—H16A | 0.9300 |
| C1—H1A | 0.9300 | C17—C18 | 1.386 (3) |
| C2—H2A | 0.9300 | C17—H17A | 0.9300 |
| C3—C4 | 1.387 (2) | C18—C19 | 1.387 (2) |
| C3—H3A | 0.9300 | C18—H18A | 0.9300 |
| C4—C5 | 1.387 (2) | C19—C20 | 1.386 (2) |
| C4—H4A | 0.9300 | C19—H19A | 0.9300 |
| C5—C6 | 1.502 (2) | C20—H20A | 0.9300 |
| C7—C8 | 1.461 (2) | O3—C21 | 1.426 (2) |
| C7—H7A | 0.9300 | O3—H1O3 | 0.88 (2) |
| C8—C9 | 1.397 (2) | C21—H21A | 0.9600 |
| C8—C13 | 1.406 (2) | C21—H21B | 0.9600 |
| C9—C10 | 1.388 (2) | C21—H21C | 0.9600 |
| C9—H9A | 0.9300 | O1W—H1W1 | 0.80 (3) |
| C10—C11 | 1.388 (2) | O1W—H2W1 | 0.88 (3) |
| C10—H10A | 0.9300 | ||
| C13—O2—C14 | 117.99 (12) | C11—C12—C13 | 119.40 (14) |
| C3—N1—C2 | 116.47 (15) | C11—C12—H12A | 120.3 |
| C6—N2—N3 | 116.85 (13) | C13—C12—H12A | 120.3 |
| C6—N2—H1N2 | 123.0 (12) | O2—C13—C12 | 123.87 (14) |
| N3—N2—H1N2 | 120.1 (12) | O2—C13—C8 | 115.77 (13) |
| C7—N3—N2 | 115.66 (13) | C12—C13—C8 | 120.35 (13) |
| C5—C1—C2 | 119.11 (15) | O2—C14—C15 | 107.03 (12) |
| C5—C1—H1A | 120.4 | O2—C14—H14A | 110.3 |
| C2—C1—H1A | 120.4 | C15—C14—H14A | 110.3 |
| N1—C2—C1 | 123.90 (15) | O2—C14—H14B | 110.3 |
| N1—C2—H2A | 118.0 | C15—C14—H14B | 110.3 |
| C1—C2—H2A | 118.0 | H14A—C14—H14B | 108.6 |
| N1—C3—C4 | 123.64 (16) | C20—C15—C16 | 119.24 (14) |
| N1—C3—H3A | 118.2 | C20—C15—C14 | 119.41 (14) |
| C4—C3—H3A | 118.2 | C16—C15—C14 | 121.32 (14) |
| C5—C4—C3 | 119.19 (15) | C17—C16—C15 | 120.22 (15) |
| C5—C4—H4A | 120.4 | C17—C16—H16A | 119.9 |
| C3—C4—H4A | 120.4 | C15—C16—H16A | 119.9 |
| C1—C5—C4 | 117.68 (14) | C16—C17—C18 | 120.22 (16) |
| C1—C5—C6 | 124.60 (14) | C16—C17—H17A | 119.9 |
| C4—C5—C6 | 117.66 (14) | C18—C17—H17A | 119.9 |
| O1—C6—N2 | 122.82 (14) | C17—C18—C19 | 119.84 (15) |
| O1—C6—C5 | 120.34 (14) | C17—C18—H18A | 120.1 |
| N2—C6—C5 | 116.84 (13) | C19—C18—H18A | 120.1 |
| N3—C7—C8 | 119.84 (13) | C20—C19—C18 | 120.24 (16) |
| N3—C7—H7A | 120.1 | C20—C19—H19A | 119.9 |
| C8—C7—H7A | 120.1 | C18—C19—H19A | 119.9 |
| C9—C8—C13 | 118.68 (13) | C19—C20—C15 | 120.24 (15) |
| C9—C8—C7 | 121.79 (13) | C19—C20—H20A | 119.9 |
| C13—C8—C7 | 119.53 (13) | C15—C20—H20A | 119.9 |
| C10—C9—C8 | 121.22 (14) | C21—O3—H1O3 | 105.8 (16) |
| C10—C9—H9A | 119.4 | O3—C21—H21A | 109.5 |
| C8—C9—H9A | 119.4 | O3—C21—H21B | 109.5 |
| C9—C10—C11 | 119.40 (14) | H21A—C21—H21B | 109.5 |
| C9—C10—H10A | 120.3 | O3—C21—H21C | 109.5 |
| C11—C10—H10A | 120.3 | H21A—C21—H21C | 109.5 |
| C10—C11—C12 | 120.93 (14) | H21B—C21—H21C | 109.5 |
| C10—C11—H11A | 119.5 | H1W1—O1W—H2W1 | 107 (2) |
| C12—C11—H11A | 119.5 | ||
| C6—N2—N3—C7 | 179.30 (13) | C9—C10—C11—C12 | 0.3 (2) |
| C3—N1—C2—C1 | 0.1 (2) | C10—C11—C12—C13 | 0.9 (2) |
| C5—C1—C2—N1 | −0.8 (3) | C14—O2—C13—C12 | −2.2 (2) |
| C2—N1—C3—C4 | 0.5 (2) | C14—O2—C13—C8 | 176.90 (12) |
| N1—C3—C4—C5 | −0.4 (3) | C11—C12—C13—O2 | 177.34 (13) |
| C2—C1—C5—C4 | 0.9 (2) | C11—C12—C13—C8 | −1.7 (2) |
| C2—C1—C5—C6 | −176.15 (14) | C9—C8—C13—O2 | −177.83 (12) |
| C3—C4—C5—C1 | −0.3 (2) | C7—C8—C13—O2 | 2.38 (19) |
| C3—C4—C5—C6 | 176.90 (14) | C9—C8—C13—C12 | 1.3 (2) |
| N3—N2—C6—O1 | −3.1 (2) | C7—C8—C13—C12 | −178.47 (13) |
| N3—N2—C6—C5 | 176.55 (12) | C13—O2—C14—C15 | −171.52 (12) |
| C1—C5—C6—O1 | 169.54 (15) | O2—C14—C15—C20 | 69.93 (18) |
| C4—C5—C6—O1 | −7.5 (2) | O2—C14—C15—C16 | −107.99 (16) |
| C1—C5—C6—N2 | −10.1 (2) | C20—C15—C16—C17 | −0.4 (2) |
| C4—C5—C6—N2 | 172.90 (14) | C14—C15—C16—C17 | 177.56 (15) |
| N2—N3—C7—C8 | −179.56 (12) | C15—C16—C17—C18 | 0.2 (3) |
| N3—C7—C8—C9 | 3.6 (2) | C16—C17—C18—C19 | 0.2 (3) |
| N3—C7—C8—C13 | −176.60 (13) | C17—C18—C19—C20 | −0.5 (3) |
| C13—C8—C9—C10 | −0.1 (2) | C18—C19—C20—C15 | 0.4 (3) |
| C7—C8—C9—C10 | 179.69 (14) | C16—C15—C20—C19 | 0.1 (2) |
| C8—C9—C10—C11 | −0.7 (2) | C14—C15—C20—C19 | −177.91 (15) |
| H··· | ||||
| N2—H1N2···O3 | 0.91 (2) | 2.06 (2) | 2.9549 (18) | 169.9 (16) |
| O3—H1O3···O1W | 0.87 (3) | 1.85 (3) | 2.7165 (19) | 174 (3) |
| O1W—H1W1···O1i | 0.80 (3) | 2.11 (3) | 2.8713 (18) | 160 (2) |
| O1W—H1W1···N3i | 0.80 (3) | 2.62 (3) | 3.2119 (19) | 133 (2) |
| O1W—H2W1···N1ii | 0.87 (3) | 2.05 (3) | 2.898 (2) | 163 (2) |
| C1—H1A···O3 | 0.93 | 2.27 | 3.189 (2) | 169 |
| C2—H2A···O1iii | 0.93 | 2.48 | 3.229 (2) | 137 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.91 (2) | 2.06 (2) | 2.9549 (18) | 169.9 (16) |
| O3—H1 | 0.87 (3) | 1.85 (3) | 2.7165 (19) | 174 (3) |
| O1 | 0.80 (3) | 2.11 (3) | 2.8713 (18) | 160 (2) |
| O1 | 0.80 (3) | 2.62 (3) | 3.2119 (19) | 133 (2) |
| O1 | 0.87 (3) | 2.05 (3) | 2.898 (2) | 163 (2) |
| C1—H1 | 0.93 | 2.27 | 3.189 (2) | 169 |
| C2—H2 | 0.93 | 2.48 | 3.229 (2) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) .