| Literature DB >> 21577984 |
H S Naveenkumar, Amirin Sadikun, Pazilah Ibrahim, Wan-Sin Loh, Hoong-Kun Fun.
Abstract
In the title compound, C(21)H(19)N(3)O(3), the pyridine ring forms a dihedral angle of 15.25 (6)° with the benzene ring. The dihedral angle between the two benzene rings is 83.66 (7)°. The meth-oxy group is slightly twisted away from the attached ring [C-O-C-C = 7.5 (2)°]. In the crystal structure, mol-ecules are linked into a three-dimensional network by inter-molecular N-H⋯N and C-H⋯O hydrogen bonds. The structure is further stabilized by C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21577984 PMCID: PMC2970303 DOI: 10.1107/S1600536809037921
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H19N3O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4601 reflections |
| θ = 2.8–32.1° | |
| µ = 0.09 mm−1 | |
| β = 93.436 (2)° | Needle, yellow |
| 0.71 × 0.13 × 0.09 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 6434 independent reflections |
| Radiation source: fine-focus sealed tube | 3841 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.6°, θmin = 1.1° |
| Absorption correction: multi-scan ( | |
| 27863 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 6433 reflections | (Δ/σ)max = 0.001 |
| 249 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.34254 (5) | 0.51645 (9) | 0.11366 (12) | 0.0270 (2) | |
| O2 | 0.17576 (5) | 0.99561 (8) | 0.38579 (11) | 0.0206 (2) | |
| O3 | 0.17536 (5) | 1.19805 (8) | 0.25594 (11) | 0.0221 (2) | |
| N1 | 0.49029 (7) | 0.30387 (11) | −0.27715 (14) | 0.0258 (3) | |
| N2 | 0.38144 (6) | 0.66534 (10) | −0.03723 (14) | 0.0205 (3) | |
| N3 | 0.34440 (6) | 0.74619 (10) | 0.04977 (13) | 0.0205 (3) | |
| C1 | 0.46166 (7) | 0.50212 (12) | −0.22030 (17) | 0.0228 (3) | |
| H1A | 0.4687 | 0.5799 | −0.2432 | 0.027* | |
| C2 | 0.49753 (8) | 0.41733 (13) | −0.30194 (17) | 0.0239 (3) | |
| H2A | 0.5287 | 0.4409 | −0.3792 | 0.029* | |
| C3 | 0.44347 (8) | 0.27391 (13) | −0.16720 (19) | 0.0310 (4) | |
| H3A | 0.4361 | 0.1955 | −0.1492 | 0.037* | |
| C4 | 0.40545 (8) | 0.35211 (13) | −0.07883 (18) | 0.0265 (3) | |
| H4A | 0.3738 | 0.3263 | −0.0037 | 0.032* | |
| C5 | 0.41511 (7) | 0.46942 (12) | −0.10385 (15) | 0.0182 (3) | |
| C6 | 0.37626 (7) | 0.55180 (12) | 0.00140 (16) | 0.0190 (3) | |
| C7 | 0.33453 (7) | 0.84479 (12) | −0.02067 (16) | 0.0192 (3) | |
| H7A | 0.3528 | 0.8565 | −0.1209 | 0.023* | |
| C8 | 0.29549 (7) | 0.93788 (12) | 0.05350 (16) | 0.0185 (3) | |
| C9 | 0.29436 (7) | 1.04692 (12) | −0.01554 (16) | 0.0205 (3) | |
| H9A | 0.3198 | 1.0602 | −0.1068 | 0.025* | |
| C10 | 0.25541 (7) | 1.13699 (12) | 0.05066 (16) | 0.0211 (3) | |
| H10A | 0.2556 | 1.2102 | 0.0044 | 0.025* | |
| C11 | 0.21677 (7) | 1.11759 (11) | 0.18421 (16) | 0.0182 (3) | |
| C12 | 0.21699 (7) | 1.00623 (11) | 0.25633 (15) | 0.0173 (3) | |
| C13 | 0.25588 (7) | 0.91782 (12) | 0.18985 (16) | 0.0186 (3) | |
| H13A | 0.2559 | 0.8445 | 0.2356 | 0.022* | |
| C14 | 0.16762 (8) | 0.88010 (12) | 0.44760 (18) | 0.0246 (3) | |
| H14A | 0.2148 | 0.8492 | 0.4839 | 0.030* | |
| H14B | 0.1466 | 0.8299 | 0.3641 | 0.030* | |
| C15 | 0.11900 (7) | 0.88528 (11) | 0.58412 (17) | 0.0197 (3) | |
| C16 | 0.14817 (8) | 0.90316 (12) | 0.73981 (18) | 0.0255 (3) | |
| H16A | 0.1983 | 0.9111 | 0.7585 | 0.031* | |
| C17 | 0.10355 (9) | 0.90916 (13) | 0.86672 (18) | 0.0312 (4) | |
| H17A | 0.1236 | 0.9215 | 0.9702 | 0.037* | |
| C18 | 0.02901 (9) | 0.89689 (13) | 0.83993 (19) | 0.0312 (4) | |
| H18A | −0.0011 | 0.9007 | 0.9254 | 0.037* | |
| C19 | −0.00072 (8) | 0.87894 (13) | 0.6859 (2) | 0.0318 (4) | |
| H19A | −0.0508 | 0.8707 | 0.6677 | 0.038* | |
| C20 | 0.04401 (8) | 0.87320 (13) | 0.55915 (18) | 0.0260 (3) | |
| H20A | 0.0237 | 0.8611 | 0.4558 | 0.031* | |
| C21 | 0.16494 (9) | 1.30698 (12) | 0.17427 (18) | 0.0280 (3) | |
| H21A | 0.1321 | 1.3542 | 0.2310 | 0.042* | |
| H21B | 0.1449 | 1.2936 | 0.0671 | 0.042* | |
| H21C | 0.2109 | 1.3459 | 0.1703 | 0.042* | |
| H1N2 | 0.4037 (9) | 0.6892 (16) | −0.122 (2) | 0.046 (5)* |
| O1 | 0.0320 (5) | 0.0276 (6) | 0.0229 (5) | 0.0005 (5) | 0.0133 (5) | 0.0027 (4) |
| O2 | 0.0252 (5) | 0.0174 (5) | 0.0203 (5) | 0.0004 (4) | 0.0108 (4) | 0.0016 (4) |
| O3 | 0.0297 (5) | 0.0164 (5) | 0.0210 (5) | 0.0043 (4) | 0.0079 (4) | 0.0011 (4) |
| N1 | 0.0284 (6) | 0.0237 (6) | 0.0258 (6) | 0.0024 (5) | 0.0045 (5) | −0.0026 (5) |
| N2 | 0.0244 (6) | 0.0200 (6) | 0.0179 (6) | 0.0025 (5) | 0.0094 (5) | −0.0010 (5) |
| N3 | 0.0211 (6) | 0.0210 (6) | 0.0201 (6) | 0.0020 (5) | 0.0076 (5) | −0.0033 (5) |
| C1 | 0.0271 (7) | 0.0185 (7) | 0.0236 (7) | 0.0026 (6) | 0.0083 (6) | 0.0020 (6) |
| C2 | 0.0248 (7) | 0.0265 (8) | 0.0212 (7) | 0.0042 (6) | 0.0084 (6) | 0.0012 (6) |
| C3 | 0.0362 (8) | 0.0188 (7) | 0.0390 (9) | −0.0011 (7) | 0.0123 (7) | 0.0000 (6) |
| C4 | 0.0271 (7) | 0.0220 (7) | 0.0315 (8) | 0.0000 (6) | 0.0113 (6) | 0.0032 (6) |
| C5 | 0.0181 (6) | 0.0211 (7) | 0.0156 (6) | 0.0020 (5) | 0.0036 (5) | 0.0004 (5) |
| C6 | 0.0187 (6) | 0.0204 (7) | 0.0183 (7) | 0.0007 (5) | 0.0038 (5) | 0.0006 (5) |
| C7 | 0.0183 (6) | 0.0223 (7) | 0.0178 (6) | −0.0007 (5) | 0.0062 (5) | −0.0009 (5) |
| C8 | 0.0171 (6) | 0.0206 (7) | 0.0180 (6) | −0.0010 (5) | 0.0034 (5) | −0.0020 (5) |
| C9 | 0.0217 (7) | 0.0224 (7) | 0.0180 (7) | −0.0013 (6) | 0.0060 (5) | 0.0009 (5) |
| C10 | 0.0247 (7) | 0.0182 (7) | 0.0207 (7) | −0.0007 (6) | 0.0034 (6) | 0.0023 (5) |
| C11 | 0.0200 (6) | 0.0174 (6) | 0.0175 (6) | 0.0003 (5) | 0.0027 (5) | −0.0021 (5) |
| C12 | 0.0172 (6) | 0.0187 (6) | 0.0163 (6) | −0.0020 (5) | 0.0049 (5) | −0.0011 (5) |
| C13 | 0.0193 (6) | 0.0178 (6) | 0.0190 (7) | −0.0001 (5) | 0.0043 (5) | 0.0011 (5) |
| C14 | 0.0287 (7) | 0.0166 (7) | 0.0301 (8) | 0.0018 (6) | 0.0139 (6) | 0.0041 (6) |
| C15 | 0.0236 (7) | 0.0142 (6) | 0.0221 (7) | 0.0016 (5) | 0.0084 (6) | 0.0016 (5) |
| C16 | 0.0274 (7) | 0.0196 (7) | 0.0294 (8) | −0.0022 (6) | −0.0005 (6) | 0.0015 (6) |
| C17 | 0.0507 (10) | 0.0242 (8) | 0.0188 (7) | 0.0000 (7) | 0.0031 (7) | −0.0011 (6) |
| C18 | 0.0440 (9) | 0.0239 (8) | 0.0280 (8) | 0.0008 (7) | 0.0208 (7) | 0.0000 (6) |
| C19 | 0.0238 (7) | 0.0328 (9) | 0.0401 (10) | −0.0015 (6) | 0.0126 (7) | −0.0020 (7) |
| C20 | 0.0251 (7) | 0.0315 (8) | 0.0217 (7) | 0.0011 (6) | 0.0048 (6) | −0.0015 (6) |
| C21 | 0.0405 (9) | 0.0181 (7) | 0.0260 (8) | 0.0074 (6) | 0.0074 (7) | 0.0032 (6) |
| O1—C6 | 1.2249 (16) | C9—C10 | 1.3964 (19) |
| O2—C12 | 1.3628 (16) | C9—H9A | 0.93 |
| O2—C14 | 1.4423 (16) | C10—C11 | 1.3763 (19) |
| O3—C11 | 1.3633 (16) | C10—H10A | 0.93 |
| O3—C21 | 1.4391 (16) | C11—C12 | 1.4208 (18) |
| N1—C2 | 1.3354 (19) | C12—C13 | 1.3826 (18) |
| N1—C3 | 1.3414 (19) | C13—H13A | 0.93 |
| N2—C6 | 1.3560 (18) | C14—C15 | 1.492 (2) |
| N2—N3 | 1.3871 (16) | C14—H14A | 0.97 |
| N2—H1N2 | 0.885 (18) | C14—H14B | 0.97 |
| N3—C7 | 1.2902 (17) | C15—C20 | 1.390 (2) |
| C1—C2 | 1.3836 (19) | C15—C16 | 1.392 (2) |
| C1—C5 | 1.3861 (19) | C16—C17 | 1.380 (2) |
| C1—H1A | 0.93 | C16—H16A | 0.93 |
| C2—H2A | 0.93 | C17—C18 | 1.383 (2) |
| C3—C4 | 1.383 (2) | C17—H17A | 0.93 |
| C3—H3A | 0.93 | C18—C19 | 1.383 (2) |
| C4—C5 | 1.3849 (19) | C18—H18A | 0.93 |
| C4—H4A | 0.93 | C19—C20 | 1.380 (2) |
| C5—C6 | 1.5049 (19) | C19—H19A | 0.93 |
| C7—C8 | 1.4527 (19) | C20—H20A | 0.93 |
| C7—H7A | 0.93 | C21—H21A | 0.96 |
| C8—C9 | 1.3855 (19) | C21—H21B | 0.96 |
| C8—C13 | 1.4072 (18) | C21—H21C | 0.96 |
| C12—O2—C14 | 116.22 (10) | O3—C11—C12 | 114.78 (11) |
| C11—O3—C21 | 116.78 (10) | C10—C11—C12 | 120.17 (12) |
| C2—N1—C3 | 115.70 (13) | O2—C12—C13 | 125.30 (12) |
| C6—N2—N3 | 118.92 (12) | O2—C12—C11 | 115.49 (11) |
| C6—N2—H1N2 | 122.3 (12) | C13—C12—C11 | 119.18 (12) |
| N3—N2—H1N2 | 118.4 (12) | C12—C13—C8 | 120.56 (12) |
| C7—N3—N2 | 114.60 (11) | C12—C13—H13A | 119.7 |
| C2—C1—C5 | 119.03 (13) | C8—C13—H13A | 119.7 |
| C2—C1—H1A | 120.5 | O2—C14—C15 | 108.43 (11) |
| C5—C1—H1A | 120.5 | O2—C14—H14A | 110.0 |
| N1—C2—C1 | 124.35 (14) | C15—C14—H14A | 110.0 |
| N1—C2—H2A | 117.8 | O2—C14—H14B | 110.0 |
| C1—C2—H2A | 117.8 | C15—C14—H14B | 110.0 |
| N1—C3—C4 | 124.23 (14) | H14A—C14—H14B | 108.4 |
| N1—C3—H3A | 117.9 | C20—C15—C16 | 118.60 (13) |
| C4—C3—H3A | 117.9 | C20—C15—C14 | 121.09 (13) |
| C3—C4—C5 | 119.06 (14) | C16—C15—C14 | 120.30 (13) |
| C3—C4—H4A | 120.5 | C17—C16—C15 | 120.72 (14) |
| C5—C4—H4A | 120.5 | C17—C16—H16A | 119.6 |
| C4—C5—C1 | 117.58 (13) | C15—C16—H16A | 119.6 |
| C4—C5—C6 | 117.49 (12) | C16—C17—C18 | 119.99 (14) |
| C1—C5—C6 | 124.89 (13) | C16—C17—H17A | 120.0 |
| O1—C6—N2 | 123.42 (13) | C18—C17—H17A | 120.0 |
| O1—C6—C5 | 121.06 (13) | C19—C18—C17 | 119.91 (15) |
| N2—C6—C5 | 115.52 (12) | C19—C18—H18A | 120.0 |
| N3—C7—C8 | 121.29 (12) | C17—C18—H18A | 120.0 |
| N3—C7—H7A | 119.4 | C20—C19—C18 | 119.98 (14) |
| C8—C7—H7A | 119.4 | C20—C19—H19A | 120.0 |
| C9—C8—C13 | 119.41 (12) | C18—C19—H19A | 120.0 |
| C9—C8—C7 | 119.45 (12) | C19—C20—C15 | 120.79 (14) |
| C13—C8—C7 | 121.07 (12) | C19—C20—H20A | 119.6 |
| C8—C9—C10 | 120.56 (13) | C15—C20—H20A | 119.6 |
| C8—C9—H9A | 119.7 | O3—C21—H21A | 109.5 |
| C10—C9—H9A | 119.7 | O3—C21—H21B | 109.5 |
| C11—C10—C9 | 120.10 (13) | H21A—C21—H21B | 109.5 |
| C11—C10—H10A | 120.0 | O3—C21—H21C | 109.5 |
| C9—C10—H10A | 120.0 | H21A—C21—H21C | 109.5 |
| O3—C11—C10 | 125.04 (12) | H21B—C21—H21C | 109.5 |
| C6—N2—N3—C7 | −160.87 (12) | C9—C10—C11—O3 | −178.10 (12) |
| C3—N1—C2—C1 | 1.4 (2) | C9—C10—C11—C12 | 0.70 (19) |
| C5—C1—C2—N1 | 0.4 (2) | C14—O2—C12—C13 | −5.78 (18) |
| C2—N1—C3—C4 | −1.8 (2) | C14—O2—C12—C11 | 172.17 (11) |
| N1—C3—C4—C5 | 0.3 (2) | O3—C11—C12—O2 | 0.27 (16) |
| C3—C4—C5—C1 | 1.5 (2) | C10—C11—C12—O2 | −178.65 (11) |
| C3—C4—C5—C6 | −176.45 (12) | O3—C11—C12—C13 | 178.35 (11) |
| C2—C1—C5—C4 | −1.84 (19) | C10—C11—C12—C13 | −0.56 (19) |
| C2—C1—C5—C6 | 175.95 (12) | O2—C12—C13—C8 | 178.59 (12) |
| N3—N2—C6—O1 | −2.77 (19) | C11—C12—C13—C8 | 0.71 (18) |
| N3—N2—C6—C5 | 177.17 (10) | C9—C8—C13—C12 | −0.98 (19) |
| C4—C5—C6—O1 | 6.12 (19) | C7—C8—C13—C12 | −177.89 (12) |
| C1—C5—C6—O1 | −171.67 (13) | C12—O2—C14—C15 | −178.00 (10) |
| C4—C5—C6—N2 | −173.82 (12) | O2—C14—C15—C20 | 89.96 (15) |
| C1—C5—C6—N2 | 8.39 (18) | O2—C14—C15—C16 | −89.64 (15) |
| N2—N3—C7—C8 | 178.85 (11) | C20—C15—C16—C17 | −0.2 (2) |
| N3—C7—C8—C9 | 171.47 (12) | C14—C15—C16—C17 | 179.39 (13) |
| N3—C7—C8—C13 | −11.63 (19) | C15—C16—C17—C18 | 0.3 (2) |
| C13—C8—C9—C10 | 1.11 (19) | C16—C17—C18—C19 | −0.2 (2) |
| C7—C8—C9—C10 | 178.06 (12) | C17—C18—C19—C20 | 0.1 (2) |
| C8—C9—C10—C11 | −0.98 (19) | C18—C19—C20—C15 | 0.0 (2) |
| C21—O3—C11—C10 | 7.50 (19) | C16—C15—C20—C19 | 0.1 (2) |
| C21—O3—C11—C12 | −171.35 (11) | C14—C15—C20—C19 | −179.52 (13) |
| H··· | ||||
| N2—H1N2···N1i | 0.88 (2) | 2.54 (2) | 3.3122 (17) | 146 (1) |
| C9—H9A···O1ii | 0.93 | 2.55 | 3.3524 (17) | 144 |
| C19—H19A···O3iii | 0.93 | 2.54 | 3.3960 (17) | 153 |
| C17—H17A···Cg1iv | 0.93 | 2.93 | 3.6694 (17) | 137 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C8–C13 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1N2⋯N1i | 0.88 (2) | 2.54 (2) | 3.3122 (17) | 146 (1) |
| C9—H9 | 0.93 | 2.55 | 3.3524 (17) | 144 |
| C19—H19 | 0.93 | 2.54 | 3.3960 (17) | 153 |
| C17—H17 | 0.93 | 2.93 | 3.6694 (17) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .