Literature DB >> 21837176

Butane-1,4-diyl bis-(pyridine-4-carboxyl-ate).

J Muthukumaran, S Karthikeyan, G Satheesh, Bala Manimaran, R Krishna.   

Abstract

The mol-ecule of the title compound, C(16)H(16)N(2)O(4), lies about an inversion centre; the butane chain adopts an extended zigzag conformation. The dihedral angle between the pyridine ring and the adjacent COO group is 3.52 (s14)°.

Entities:  

Year:  2011        PMID: 21837176      PMCID: PMC3152005          DOI: 10.1107/S1600536811023646

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Brito et al. (2010 ▶).

Experimental

Crystal data

C16H16N2O4 M = 300.31 Monoclinic, a = 7.8519 (5) Å b = 10.5284 (6) Å c = 8.9121 (4) Å β = 91.770 (5)° V = 736.39 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.35 × 0.13 × 0.04 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.840, T max = 1.000 2431 measured reflections 1303 independent reflections 754 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.102 S = 0.87 1303 reflections 100 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811023646/ng5184sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023646/ng5184Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811023646/ng5184Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O4F(000) = 316
Mr = 300.31Dx = 1.354 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 852 reflections
a = 7.8519 (5) Åθ = 2.6–28.6°
b = 10.5284 (6) ŵ = 0.10 mm1
c = 8.9121 (4) ÅT = 293 K
β = 91.770 (5)°Plate, colorless
V = 736.39 (7) Å30.35 × 0.13 × 0.04 mm
Z = 2
Oxford Diffraction Xcalibur Eos diffractometer1303 independent reflections
Radiation source: fine-focus sealed tube754 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 15.9821 pixels mm-1θmax = 25.0°, θmin = 2.6°
ω scansh = −9→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −12→7
Tmin = 0.840, Tmax = 1.000l = −6→10
2431 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 0.87w = 1/[σ2(Fo2) + (0.0561P)2] where P = (Fo2 + 2Fc2)/3
1303 reflections(Δ/σ)max = 0.001
100 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.33092 (14)0.50761 (11)0.18817 (12)0.0510 (4)
C20.21740 (19)0.51211 (16)−0.05823 (17)0.0389 (4)
C10.2787 (2)0.58307 (18)0.0775 (2)0.0466 (5)
O20.2806 (2)0.69674 (13)0.08561 (15)0.0789 (5)
C30.1504 (2)0.57907 (18)−0.17878 (19)0.0504 (5)
H30.14380.6672−0.17530.060*
C60.2231 (2)0.38214 (18)−0.06986 (19)0.0529 (5)
H60.26630.33270.00900.063*
N10.0981 (2)0.39039 (17)−0.31796 (17)0.0607 (5)
C40.0936 (2)0.5144 (2)−0.3041 (2)0.0546 (6)
H40.04910.5614−0.38440.065*
C70.3923 (2)0.57013 (18)0.32514 (19)0.0539 (6)
H7A0.30010.61620.37050.065*
H7B0.48190.63000.30260.065*
C80.4589 (2)0.47077 (18)0.42959 (18)0.0465 (5)
H8A0.54240.41950.37920.056*
H8B0.36630.41560.45770.056*
C50.1632 (3)0.3269 (2)−0.2011 (2)0.0645 (6)
H50.16880.2389−0.20840.077*
U11U22U33U12U13U23
O10.0716 (8)0.0474 (8)0.0329 (7)0.0001 (6)−0.0175 (6)−0.0006 (6)
C20.0430 (10)0.0424 (10)0.0310 (9)−0.0030 (8)−0.0023 (8)−0.0006 (9)
C10.0597 (12)0.0440 (11)0.0356 (10)−0.0006 (10)−0.0063 (9)0.0026 (10)
O20.1401 (14)0.0422 (9)0.0522 (9)−0.0013 (9)−0.0322 (8)−0.0016 (7)
C30.0659 (13)0.0436 (11)0.0410 (11)−0.0005 (10)−0.0108 (10)0.0029 (9)
C60.0726 (13)0.0466 (12)0.0386 (11)0.0012 (10)−0.0110 (10)0.0022 (10)
N10.0755 (12)0.0600 (12)0.0454 (10)−0.0034 (9)−0.0162 (9)−0.0042 (9)
C40.0683 (14)0.0590 (13)0.0353 (10)0.0028 (11)−0.0156 (9)0.0027 (10)
C70.0710 (13)0.0542 (13)0.0353 (10)−0.0022 (10)−0.0185 (10)−0.0059 (9)
C80.0540 (11)0.0516 (11)0.0331 (9)−0.0001 (9)−0.0111 (8)−0.0010 (9)
C50.0927 (16)0.0447 (12)0.0553 (13)−0.0060 (11)−0.0134 (12)−0.0084 (11)
O1—C11.322 (2)N1—C41.312 (2)
O1—C71.4558 (19)N1—C51.326 (2)
C2—C61.373 (2)C4—H40.9300
C2—C31.376 (2)C7—C81.485 (2)
C2—C11.489 (2)C7—H7A0.9700
C1—O21.199 (2)C7—H7B0.9700
C3—C41.371 (2)C8—C8i1.523 (3)
C3—H30.9300C8—H8A0.9700
C6—C51.376 (2)C8—H8B0.9700
C6—H60.9300C5—H50.9300
C1—O1—C7116.16 (14)C3—C4—H4117.9
C6—C2—C3117.66 (16)O1—C7—C8107.95 (14)
C6—C2—C1123.43 (17)O1—C7—H7A110.1
C3—C2—C1118.91 (17)C8—C7—H7A110.1
O2—C1—O1123.51 (18)O1—C7—H7B110.1
O2—C1—C2123.57 (18)C8—C7—H7B110.1
O1—C1—C2112.93 (16)H7A—C7—H7B108.4
C4—C3—C2119.25 (17)C7—C8—C8i111.34 (19)
C4—C3—H3120.4C7—C8—H8A109.4
C2—C3—H3120.4C8i—C8—H8A109.4
C2—C6—C5118.30 (18)C7—C8—H8B109.4
C2—C6—H6120.9C8i—C8—H8B109.4
C5—C6—H6120.9H8A—C8—H8B108.0
C4—N1—C5115.97 (17)N1—C5—C6124.61 (18)
N1—C4—C3124.21 (18)N1—C5—H5117.7
N1—C4—H4117.9C6—C5—H5117.7
C7—O1—C1—O20.3 (3)C3—C2—C6—C50.6 (3)
C7—O1—C1—C2−179.81 (14)C1—C2—C6—C5−179.81 (17)
C6—C2—C1—O2176.70 (18)C5—N1—C4—C3−0.3 (3)
C3—C2—C1—O2−3.7 (3)C2—C3—C4—N10.2 (3)
C6—C2—C1—O1−3.2 (2)C1—O1—C7—C8−175.01 (15)
C3—C2—C1—O1176.39 (15)O1—C7—C8—C8i174.67 (17)
C6—C2—C3—C4−0.3 (3)C4—N1—C5—C60.6 (3)
C1—C2—C3—C4−179.94 (16)C2—C6—C5—N1−0.7 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Propane-1,3-diyl bis-(pyridine-4-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Michael Bolte; Matías López-Rodríguez; Alejandro Cárdenas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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